Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0014010

Physical Location & Seq

Genomic Coordinates Forward (+)

55969963 .. 55972947

Gene Structure 2985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0393000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1542 bp

ATGGCTGGAAACGAAGAAGAACACCGGCAGCCGCCGCCGCCGTCGCCTCGTCCTCCGCATCCTTCGCGTCCCACGATTACTCTGCCGCCGCGGACTTGTTTTGAGACGATGTTTAACAACAACTCCGGAACCGGCGGGAATACTGGGGCGGGCTTGGGGTTCAGTCCGGGGCCGATGACTCTGGTTTCGAGCTTCTTCTCTGATGGGGAAGACTGCAAGTCGTTTTCTCAGCTGCTGGCTGGAGCCATGCTGTCTCCGGCGGACAGGGCGGGGTTTCCGCCGCTTGAAGACAGGAATTCCGGGGATGACAGCAGTGATTTCCGGTTCCAGAATGGACCGGCGGGGATGTCGATTGGACCGCCGTCGCCGATGTTTCCGGCTGGTTTCCTCGACTCGCCGGGAGGACTATTCTCACCCGGACAGGGAGCCTTTGGAATGACGCACCAGCAGGCACTAGCTCAAGTGACAGCTCAGGCTTCACAATCCCAATCCTACACTTTTCATATCCCAAATGAACACTCTACGTCTATGACACAGCTTCCGATCTTTACTTCCAGTACAACACCACCCCAGGAGATGCCATCTGAAATACCCGATTCTGGGGTCACTCTGAAAGAATCGTCTGATATCTCACATTCGGAACAGAGATCCCAACCATCTTCATTGACTGTCGACAAGCCTAATGATGACGGTTACAATTGGCGGAAATATGGGCAGAAGCAGGTGAAGGGGAGTGAGTTTCCTAGAAGTTATTACAAATGCACGCATCCCAGTTGTCCAGTCAAGAAAAAGGTTGAACGCTCGGTTGATGGCCAGATAACTGAAATCATTTACAAGGGTGAGCATAACCATCAGCGTCCTCAATCTAAGCGCCCAAAGGATTCTGGAAATCAAAATGGAAATGTTCAGGTGAATCATGACTTAGCTTCCCAAGTTCATGGTGAGAACTTGAACAAATCAAAAGAAGGGACTTATTCAATGTCTAAGCAGGGTCAGGAATCTAGCCAAGCAATATCTGGGACAAGTGACAGTGAGGAAGTTGGAGATGCTGAAACAAAAGTAGAAGAAAAAGATGAAGATGAACCTGCTGCCAAGAGACGAAATATGGAGGTCAGGCATTCAGAGCCAGCTTCTTCTCATCGGACTGTGACAGAGCCTAGAATCATAGTGCAGACAACCAGTGAAGTTGATCTGTTAGATGATGGCTACCGGTGGCGAAAGTATGGGCAGAAAGTTGTCAAAGGCAATCCTTATCCAAGGAGCTATTATAAATGCACATTCCAGGGATGCAATGTACGTAAGCACGTAGAGAGAGCAGCAACAGATCCTAAAGCCGTCATAACAACATATGAGGGCAAACATAATCATGATGTACCTGCTTCTAAATCTGGCAGCCACTACGCAGCCAACAACAATGCATCAAATCTAAGATCAGGCAACCCGGGAACTGAAAAGCATGCCTCAGTTAGCAAGATGGATCCTCGAAACAATGACCAACAGCCTGTAGCGCGTCTACGTTTAAAAGAAGAACAAATAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006629 GO:0006720 GO:0006721 GO:0006996 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009579 GO:0009657 GO:0009916 GO:0009987 GO:0016043 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016491 GO:0016679 GO:0016682 GO:0042440 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044464 GO:0046148 GO:0055114 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AOX

Protein Analysis

513

Amino Acids

56.2

Weight (kDa)

6.53

Isoelectric Point (pI)

60.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	229 - 285	1e-27	WRKY DNA -binding domain
WRKY	PF03106	400 - 457	9.4e-27	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22260
fragaria_vesca	FvH4_3g01250 FvH4_3g01250 FvH4_3g01250
malus_domestica	MD05G1354300.v1.1 MD10G1328600.v1.1
prunus_persica	Prupe.4G013400_v2.0.a1
pyrus_communis	pycom10g27840
rosa_chinensis	RchiOBHm_Chr5g0001781
rosa_laevigata	RLG00000030972
rosa_multiflora	Rmu_ssc0000237.1_g000013
rosa_roxburghii	Rroxscaffold_1G00071240 Rroxscaffold_1G00074550
rosa_rugosa	Rorug04G0393000
rosa_samantha	Rh5BG017700 Rh5DG015800
rosa_wichuraiana	Rw5G001380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1269
AarI	CACCTGC	1 cut(s)	712
Acc36I	ACCTGC	3 cut(s)	712, 1093, 1384
AccI	GTMKAC	2 cut(s)	672, 1513
AccII	CGCG	3 cut(s)	67, 91, 1510
AccIII	TCCGGA	1 cut(s)	125
AclWI	GGATC	4 cut(s)	642, 1319, 1472, 1485
AcoI	YGGCCR	1 cut(s)	811
AcsI	RAATTY	1 cut(s)	295
AfaI	GTAC	3 cut(s)	559, 1296, 1374
AfiI	CCNNNNNNNGG	3 cut(s)	422, 599, 600
AgeI	ACCGGT	1 cut(s)	1209
AgsI	TTSAA	4 cut(s)	287, 797, 952, 978
AhdI	GACNNNNNGTC	1 cut(s)	217
AjnI	CCWGG	2 cut(s)	570, 1281
AluBI	AGCT	8 cut(s)	192, 232, 458, 470, 538, 926, 1130, 1263
AluI	AGCT	8 cut(s)	192, 232, 458, 470, 538, 926, 1130, 1263
Alw26I	GTCTC	3 cut(s)	98, 258, 1090
AlwI	GGATC	4 cut(s)	642, 1319, 1472, 1485
AlwNI	CAGNNNCTG	1 cut(s)	235
Ama87I	CYCGRG	1 cut(s)	1441
Aor13HI	TCCGGA	1 cut(s)	125
AoxI	GGCC	2 cut(s)	170, 811
ApeKI	GCWGC	6 cut(s)	28, 232, 1088, 1316, 1392, 1403
ApoI	RAATTY	1 cut(s)	295
ArsI	GACNNNNNNTTYG	2 cut(s)	169, 201
AsiGI	ACCGGT	1 cut(s)	1209
AspLEI	GCGC	2 cut(s)	873, 1510
AspS9I	GGNCC	3 cut(s)	170, 335, 356
AsuC2I	CCSGG	6 cut(s)	168, 301, 399, 417, 1442, 1443
AsuHPI	GGTGA	5 cut(s)	405, 736, 851, 922, 953
AvaI	CYCGRG	1 cut(s)	1441
AvaII	GGWCC	2 cut(s)	335, 356
BalI	TGGCCA	1 cut(s)	813
BamHI	GGATCC	1 cut(s)	1477
BbsI	GAAGAC	2 cut(s)	216, 294
BbvI	GCAGC	6 cut(s)	40, 219, 1075, 1328, 1404, 1415
BccI	CCATC	7 cut(s)	197, 589, 664, 803, 858, 1196, 1468
BceAI	ACGGC	3 cut(s)	25, 346, 1319
BcgI	CGANNNNNNTGC	2 cut(s)	64, 98
BciT130I	CCWGG	2 cut(s)	572, 1283
BcnI	CCSGG	6 cut(s)	168, 301, 399, 417, 1442, 1443
BcoDI	GTCTC	3 cut(s)	98, 258, 1090
BfaI	CTAG	4 cut(s)	455, 744, 1002, 1158
BfmI	CTRYAG	1 cut(s)	1503
BfoI	RGCGCY	1 cut(s)	874
BfuAI	ACCTGC	3 cut(s)	712, 1093, 1384
Bme1390I	CCNGG	8 cut(s)	168, 301, 399, 417, 572, 1283, 1442, 1443
Bme18I	GGWCC	2 cut(s)	335, 356
BmeRI	GACNNNNNGTC	1 cut(s)	217
BmeT110I	CYCGRG	1 cut(s)	1441
BmgT120I	GGNCC	3 cut(s)	170, 335, 356
BmiI	GGNNCC	6 cut(s)	130, 171, 244, 326, 427, 1479
BmrFI	CCNGG	8 cut(s)	168, 301, 399, 417, 572, 1283, 1442, 1443
BmrI	ACTGGG	2 cut(s)	153, 765
BmsI	GCATC	6 cut(s)	67, 567, 775, 1036, 1277, 1427
BmuI	ACTGGG	2 cut(s)	153, 765
BoxI	GACNNNNGTC	1 cut(s)	361
BpiI	GAAGAC	2 cut(s)	216, 294
BpmI	CTGGAG	1 cut(s)	261
Bpu10I	CCTNAGC	1 cut(s)	471
BpuEI	CTTGAG	1 cut(s)	444
BpuMI	CCSGG	6 cut(s)	168, 301, 399, 417, 1442, 1443
BsaAI	YACGTR	2 cut(s)	1298, 1306
BsaJI	CCNNGG	7 cut(s)	89, 167, 300, 570, 1256, 1282, 1441
BsaWI	WCCGGW	3 cut(s)	125, 321, 1209
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	3 cut(s)	422, 599, 600
Bse118I	RCCGGY	4 cut(s)	24, 131, 337, 1209
Bse1I	ACTGG	5 cut(s)	148, 555, 771, 779, 1179
Bse3DI	GCAATG	1 cut(s)	1297
BseAI	TCCGGA	1 cut(s)	125
BseBI	CCWGG	2 cut(s)	572, 1283
BseDI	CCNNGG	7 cut(s)	89, 167, 300, 570, 1256, 1282, 1441
BseGI	GGATG	5 cut(s)	58, 310, 351, 766, 1292
BseLI	CCNNNNNNNGG	3 cut(s)	422, 599, 600
BseMI	GCAATG	1 cut(s)	1297
BseMII	CTCAG	3 cut(s)	242, 485, 1476
BseNI	ACTGG	5 cut(s)	148, 555, 771, 779, 1179
BseXI	GCAGC	6 cut(s)	40, 219, 1075, 1328, 1404, 1415
BsgI	GTGCAG	1 cut(s)	1190
Bsh1236I	CGCG	3 cut(s)	67, 91, 1510
BshFI	GGCC	2 cut(s)	172, 813
BshTI	ACCGGT	1 cut(s)	1209
BsiHKCI	CYCGRG	1 cut(s)	1441
BslFI	GGGAC	3 cut(s)	54, 982, 1033
BslI	CCNNNNNNNGG	3 cut(s)	422, 599, 600
BsmAI	GTCTC	3 cut(s)	98, 258, 1090
BsmBI	CGTCTC	2 cut(s)	98, 1090
BsmFI	GGGAC	3 cut(s)	54, 982, 1033
BsmI	GAATGC	1 cut(s)	1117
BsnI	GGCC	2 cut(s)	172, 813
BsoBI	CYCGRG	1 cut(s)	1441
Bsp13I	TCCGGA	1 cut(s)	125
Bsp143I	GATC	6 cut(s)	543, 647, 1189, 1324, 1430, 1477
BspANI	GGCC	2 cut(s)	172, 813
BspCNI	CTCAG	3 cut(s)	241, 484, 1475
BspEI	TCCGGA	1 cut(s)	125
BspFNI	CGCG	3 cut(s)	67, 91, 1510
BspHI	TCATGA	2 cut(s)	916, 1366
BspLI	GGNNCC	6 cut(s)	130, 171, 244, 326, 427, 1479
BspMI	ACCTGC	3 cut(s)	712, 1093, 1384
BspPI	GGATC	4 cut(s)	642, 1319, 1472, 1485
BsrDI	GCAATG	1 cut(s)	1297
BsrFI	RCCGGY	4 cut(s)	24, 131, 337, 1209
BsrI	ACTGG	5 cut(s)	148, 555, 771, 779, 1179
BssAI	RCCGGY	4 cut(s)	24, 131, 337, 1209
BssECI	CCNNGG	7 cut(s)	89, 167, 300, 570, 1256, 1282, 1441
BssMI	GATC	6 cut(s)	543, 647, 1189, 1324, 1430, 1477
BssT1I	CCWWGG	1 cut(s)	1256
Bst2UI	CCWGG	2 cut(s)	572, 1283
Bst4CI	ACNGT	4 cut(s)	670, 692, 1031, 1147
BstBAI	YACGTR	2 cut(s)	1298, 1306
BstC8I	GCNNGC	6 cut(s)	151, 237, 450, 764, 1128, 1458
BstDEI	CTNAG	7 cut(s)	228, 471, 867, 922, 984, 1427, 1462
BstDSI	CCRYGG	1 cut(s)	89
BstF5I	GGATG	5 cut(s)	58, 310, 351, 766, 1292
BstFNI	CGCG	3 cut(s)	67, 91, 1510
BstH2I	RGCGCY	1 cut(s)	874
BstHHI	GCGC	2 cut(s)	873, 1510
BstKTI	GATC	6 cut(s)	546, 650, 1192, 1327, 1433, 1480
BstMAI	GTCTC	3 cut(s)	98, 258, 1090
BstMBI	GATC	6 cut(s)	543, 647, 1189, 1324, 1430, 1477
BstMWI	GCNNNNNNNGC	7 cut(s)	34, 37, 43, 64, 266, 1123, 1507
BstNI	CCWGG	2 cut(s)	572, 1283
BstNSI	RCATGY	1 cut(s)	1460
BstPAI	GACNNNNGTC	1 cut(s)	361
BstSCI	CCNGG	8 cut(s)	166, 299, 397, 415, 570, 1281, 1440, 1441
BstSFI	CTRYAG	1 cut(s)	1503
BstSNI	TACGTA	1 cut(s)	1298
BstUI	CGCG	3 cut(s)	67, 91, 1510
BstV1I	GCAGC	6 cut(s)	40, 219, 1075, 1328, 1404, 1415
BstV2I	GAAGAC	2 cut(s)	216, 294
BstX2I	RGATCY	3 cut(s)	647, 1324, 1477
BstXI	CCANNNNNNTGG	1 cut(s)	938
BstYI	RGATCY	3 cut(s)	647, 1324, 1477
BsuRI	GGCC	2 cut(s)	172, 813
BtgI	CCRYGG	1 cut(s)	89
BtsCI	GGATG	5 cut(s)	58, 310, 351, 766, 1292
BtsI	GCAGTG	1 cut(s)	319
BtsIMutI	CAGTG	3 cut(s)	319, 1036, 1186
BveI	ACCTGC	3 cut(s)	712, 1093, 1384
Cac8I	GCNNGC	6 cut(s)	151, 237, 450, 764, 1128, 1458
CaiI	CAGNNNCTG	1 cut(s)	235
CciI	TCATGA	2 cut(s)	916, 1366
CfoI	GCGC	2 cut(s)	873, 1510
Cfr10I	RCCGGY	4 cut(s)	24, 131, 337, 1209
Cfr13I	GGNCC	3 cut(s)	170, 335, 356
Cfr42I	CCGCGG	1 cut(s)	92
Cfr9I	CCCGGG	1 cut(s)	1441
CseI	GACGC	4 cut(s)	56, 448, 845, 1499
Csp6I	GTAC	3 cut(s)	558, 1295, 1373
CspAI	ACCGGT	1 cut(s)	1209
CviAII	CATG	5 cut(s)	247, 917, 938, 1367, 1457
CviQI	GTAC	3 cut(s)	558, 1295, 1373
DdeI	CTNAG	7 cut(s)	228, 471, 867, 922, 984, 1427, 1462
DpnI	GATC	6 cut(s)	545, 649, 1191, 1326, 1432, 1479
DpnII	GATC	6 cut(s)	543, 647, 1189, 1324, 1430, 1477
DraI	TTTAAA	1 cut(s)	1521
DriI	GACNNNNNGTC	1 cut(s)	217
EaeI	YGGCCR	1 cut(s)	811
Eam1105I	GACNNNNNGTC	1 cut(s)	217
EciI	GGCGGA	3 cut(s)	267, 275, 718
Eco105I	TACGTA	1 cut(s)	1298
Eco130I	CCWWGG	1 cut(s)	1256
Eco32I	GATATC	1 cut(s)	628
Eco47I	GGWCC	2 cut(s)	335, 356
Eco88I	CYCGRG	1 cut(s)	1441
EcoRI	GAATTC	1 cut(s)	295
EcoRII	CCWGG	2 cut(s)	570, 1281
EcoRV	GATATC	1 cut(s)	628
EcoT14I	CCWWGG	1 cut(s)	1256
EcoT22I	ATGCAT	1 cut(s)	1420
ErhI	CCWWGG	1 cut(s)	1256
Esp3I	CGTCTC	2 cut(s)	98, 1090
FaeI	CATG	5 cut(s)	250, 920, 941, 1370, 1460
FaqI	GGGAC	3 cut(s)	54, 982, 1033
FatI	CATG	5 cut(s)	246, 916, 937, 1366, 1456
FauI	CCCGC	4 cut(s)	128, 142, 262, 334
FauNDI	CATATG	1 cut(s)	1348
FblI	GTMKAC	2 cut(s)	672, 1513
FokI	GGATG	5 cut(s)	45, 317, 358, 753, 1299
FspBI	CTAG	4 cut(s)	455, 744, 1002, 1158
GlaI	GCGC	2 cut(s)	872, 1509
GsuI	CTGGAG	1 cut(s)	261
HaeII	RGCGCY	1 cut(s)	874
HaeIII	GGCC	2 cut(s)	172, 813
HgaI	GACGC	4 cut(s)	56, 448, 845, 1499
HhaI	GCGC	2 cut(s)	873, 1510
Hin1II	CATG	5 cut(s)	250, 920, 941, 1370, 1460
Hin6I	GCGC	2 cut(s)	871, 1508
HinP1I	GCGC	2 cut(s)	871, 1508
HincII	GTYRAC	1 cut(s)	673
HindII	GTYRAC	1 cut(s)	673
HinfI	GANTC	8 cut(s)	178, 392, 596, 617, 881, 913, 998, 1161
HphI	GGTGA	5 cut(s)	405, 736, 851, 922, 953
Hpy166II	GTNNAC	2 cut(s)	673, 1514
Hpy188I	TCNGA	8 cut(s)	202, 543, 586, 612, 625, 640, 1123, 1143
Hpy188III	TCNNGA	7 cut(s)	126, 328, 784, 885, 917, 995, 1367
Hpy8I	GTNNAC	2 cut(s)	673, 1514
Hpy99I	CGWCG	2 cut(s)	46, 367
HpyAV	CCTTC	3 cut(s)	72, 721, 959
HpyCH4III	ACNGT	4 cut(s)	670, 692, 1031, 1147
HpyCH4IV	ACGT	4 cut(s)	524, 1297, 1305, 1516
HpyCH4V	TGCA	6 cut(s)	216, 762, 1171, 1275, 1290, 1418
HpyF10VI	GCNNNNNNNGC	7 cut(s)	34, 37, 43, 64, 266, 1123, 1507
HpyF3I	CTNAG	7 cut(s)	228, 471, 867, 922, 984, 1427, 1462
HpySE526I	ACGT	4 cut(s)	524, 1297, 1305, 1516
Hsp92II	CATG	5 cut(s)	250, 920, 941, 1370, 1460
HspAI	GCGC	2 cut(s)	871, 1508
Kpn2I	TCCGGA	1 cut(s)	125
KspI	CCGCGG	1 cut(s)	92
Kzo9I	GATC	6 cut(s)	543, 647, 1189, 1324, 1430, 1477
LmnI	GCTCC	3 cut(s)	242, 425, 1260
Lsp1109I	GCAGC	6 cut(s)	40, 219, 1075, 1328, 1404, 1415
LweI	GCATC	6 cut(s)	67, 567, 775, 1036, 1277, 1427
MaeI	CTAG	4 cut(s)	455, 744, 1002, 1158
MaeII	ACGT	4 cut(s)	524, 1297, 1305, 1516
MaeIII	GTNAC	5 cut(s)	463, 604, 692, 1025, 1147
MalI	GATC	6 cut(s)	545, 649, 1191, 1326, 1432, 1479
MboI	GATC	6 cut(s)	543, 647, 1189, 1324, 1430, 1477
MfeI	CAATTG	1 cut(s)	697
MflI	RGATCY	3 cut(s)	647, 1324, 1477
MlsI	TGGCCA	1 cut(s)	813
MluCI	AATT	2 cut(s)	295, 697
MluNI	TGGCCA	1 cut(s)	813
MlyI	GAGTC	2 cut(s)	172, 386
MmeI	TCCRAC	1 cut(s)	1021
Mox20I	TGGCCA	1 cut(s)	813
Mph1103I	ATGCAT	1 cut(s)	1420
MroI	TCCGGA	1 cut(s)	125
MscI	TGGCCA	1 cut(s)	813
MseI	TTAA	2 cut(s)	114, 1520
MslI	CAYNNNNRTG	1 cut(s)	1365
Msp20I	TGGCCA	1 cut(s)	813
MspA1I	CMGCKG	2 cut(s)	91, 232
MspR9I	CCNGG	8 cut(s)	168, 301, 399, 417, 572, 1283, 1442, 1443
MunI	CAATTG	1 cut(s)	697
Mva1269I	GAATGC	1 cut(s)	1117
MvaI	CCWGG	2 cut(s)	572, 1283
MvnI	CGCG	3 cut(s)	67, 91, 1510
MwoI	GCNNNNNNNGC	7 cut(s)	34, 37, 43, 64, 266, 1123, 1507
NciI	CCSGG	6 cut(s)	168, 301, 399, 417, 1442, 1443
NdeI	CATATG	1 cut(s)	1348
NdeII	GATC	6 cut(s)	543, 647, 1189, 1324, 1430, 1477
NlaIII	CATG	5 cut(s)	250, 920, 941, 1370, 1460
NlaIV	GGNNCC	6 cut(s)	130, 171, 244, 326, 427, 1479
NmuCI	GTSAC	4 cut(s)	463, 604, 1025, 1147
NsiI	ATGCAT	1 cut(s)	1420
NspI	RCATGY	1 cut(s)	1460
PaeI	GCATGC	1 cut(s)	1460
PagI	TCATGA	2 cut(s)	916, 1366
PaqCI	CACCTGC	1 cut(s)	712
PcsI	WCGNNNNNNNCGW	1 cut(s)	71
PctI	GAATGC	1 cut(s)	1117
PfeI	GAWTC	6 cut(s)	596, 617, 881, 913, 998, 1161
PinAI	ACCGGT	1 cut(s)	1209
PleI	GAGTC	2 cut(s)	172, 386
PpsI	GAGTC	2 cut(s)	172, 386
Ppu21I	YACGTR	2 cut(s)	1298, 1306
PshAI	GACNNNNGTC	1 cut(s)	361
PsiI	TTATAA	1 cut(s)	1269
Psp6I	CCWGG	2 cut(s)	570, 1281
PspGI	CCWGG	2 cut(s)	570, 1281
PspN4I	GGNNCC	6 cut(s)	130, 171, 244, 326, 427, 1479
PspPI	GGNCC	3 cut(s)	170, 335, 356
PstNI	CAGNNNCTG	1 cut(s)	235
PsuI	RGATCY	3 cut(s)	647, 1324, 1477
PvuII	CAGCTG	1 cut(s)	232
RsaI	GTAC	3 cut(s)	559, 1296, 1374
RsaNI	GTAC	3 cut(s)	558, 1295, 1373
RseI	CAYNNNNRTG	1 cut(s)	1365
SacII	CCGCGG	1 cut(s)	92
SalI	GTCGAC	1 cut(s)	671
SaqAI	TTAA	2 cut(s)	114, 1520
Sau3AI	GATC	6 cut(s)	543, 647, 1189, 1324, 1430, 1477
Sau96I	GGNCC	3 cut(s)	170, 335, 356
SchI	GAGTC	2 cut(s)	172, 386
ScrFI	CCNGG	8 cut(s)	168, 301, 399, 417, 572, 1283, 1442, 1443
SfaNI	GCATC	6 cut(s)	67, 567, 775, 1036, 1277, 1427
SfcI	CTRYAG	1 cut(s)	1503
Sfr303I	CCGCGG	1 cut(s)	92
SgrBI	CCGCGG	1 cut(s)	92
SinI	GGWCC	2 cut(s)	335, 356
SmaI	CCCGGG	1 cut(s)	1443
SmiMI	CAYNNNNRTG	1 cut(s)	1365
SmlI	CTYRAG	1 cut(s)	459
SmoI	CTYRAG	1 cut(s)	459
SnaBI	TACGTA	1 cut(s)	1298
SphI	GCATGC	1 cut(s)	1460
Sse9I	AATT	2 cut(s)	295, 697
SspMI	CTAG	4 cut(s)	455, 744, 1002, 1158
StyD4I	CCNGG	8 cut(s)	166, 299, 397, 415, 570, 1281, 1440, 1441
StyI	CCWWGG	1 cut(s)	1256
TaaI	ACNGT	4 cut(s)	670, 692, 1031, 1147
TaiI	ACGT	4 cut(s)	527, 1300, 1308, 1519
TaqI	TCGA	5 cut(s)	188, 350, 390, 672, 1483
TasI	AATT	2 cut(s)	295, 697
TatI	WGTACW	1 cut(s)	557
TauI	GCSGC	6 cut(s)	34, 37, 40, 88, 91, 283
TfiI	GAWTC	6 cut(s)	596, 617, 881, 913, 998, 1161
Tru1I	TTAA	2 cut(s)	114, 1520
Tru9I	TTAA	2 cut(s)	114, 1520
TscAI	CASTG	3 cut(s)	319, 1036, 1186
TseFI	GTSAC	4 cut(s)	463, 604, 1025, 1147
TseI	GCWGC	6 cut(s)	28, 232, 1088, 1316, 1392, 1403
Tsp45I	GTSAC	4 cut(s)	463, 604, 1025, 1147
TspDTI	ATGAA	6 cut(s)	491, 528, 651, 926, 1089, 1095
TspMI	CCCGGG	1 cut(s)	1441
TspRI	CASTG	3 cut(s)	319, 1036, 1186
VpaK11BI	GGWCC	2 cut(s)	335, 356
XapI	RAATTY	1 cut(s)	295
XceI	RCATGY	1 cut(s)	1460
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1013
XmaI	CCCGGG	1 cut(s)	1441
XmiI	GTMKAC	2 cut(s)	672, 1513
XspI	CTAG	4 cut(s)	455, 744, 1002, 1158
Zsp2I	ATGCAT	1 cut(s)	1420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.