RchiOBHm_Chr5g0001781

Belongs to the alternative oxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0014010
Physical Location & Seq
Forward (+)
986655 .. 990581
3927 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28319

Sequence Viewer

Length: 1098 bp
ATGGCAGCGGCGACTCTGTCTTCGACGGTGTCTGCAATCCCAACTTCCTGCTCTTCTTCGTCTCTCAAAGCAAGGACCTTGAAGACTTCAGCTTTTTCTTCTTCGTCCTCGCTCTGCTCTCTGAATCGTTTTCCTTGCAATCCCATCTCAGCTCGTCCATCGTGTTCCAGAAATTTGTATAGGGTACATGCAACTATTCTCCAAGATGAAGAAGAGAAAGTGGTGGTGGAGGAGTCCTTTGAGTTCAAGGCAACTACCTCTGATGAAGTCAAAGCCAGCAGTGGGGAGGCCTCTGAGAGTGAGCCTTCTAGTGATTTTGAGAAATGGGTTATCAAGGGTGAACAATCCATCAACGTTTTCCTTACGGATACAGTGATTAAGGTACTTGATACTCTTTACCACGACCGTGATTATGCCAGGTTCTTTGTACTGGAAACTATTGCAAGGGTTCCCTACTTCGCCTTTATGTCTGTTCTGCACTTGTATGAGACTTTTGGCTGGTGGAGGAGAAGAGATTATTTGAAAGTGCATTTTGCTGAGAGCTGGAATGAGATGCACCACTTGCTTATCATGGAAGAATTGGGAGGAAATGCTTGGTGGTTTGATCGTTTTCTTGCTCAGCACATTGCGGTCGTCTATTACTTTATGACAGTTTTTATGTATTTAATAAGCCCACGAATGGCATATCACTTCTCTGAATGTGTAGAGGGCCATGCATTTTCGACATATGACAAGTTTATCAAGGCTGAAGGAGAGAATCTGAAAAAATTGCCTGCTCCTGAGGTTGCTGTAAAATACTACACTGGAGGTGACTTGTACTTGTTTGATGAATTTCAAACTTCCAGACCTCCCAATTCTCGAAGGCCGAAAATAGAGAATTTGTTCGATGTATTTCTGAACGTAAGAGATGATGAAGCTGAGCACTGTAAGACGATGAAGGCCTGCCAAACTCACGGGAACCTCTTTTCTCCTCATTCAATTGTAGAAGATCCCTTGGATCCTGTGGAAGATGAGTCTATCTGTGTCTCACCTCAAACAGATTCTGAAGGTATTGTAGATTGTATTACAAAATCCGTTGCAACGAAACCAGCAGAGTGA

Protein Analysis

365

Amino Acids

41.57

Weight (kDa)

5.24

Isoelectric Point (pI)

51.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AOX PF01786 120 - 316 1.7e-42 Alternative oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014010)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G22260
fragaria_vesca FvH4_3g01250 FvH4_3g01250 FvH4_3g01250
malus_domestica MD05G1354300.v1.1 MD10G1328600.v1.1
prunus_persica Prupe.4G013400_v2.0.a1
pyrus_communis pycom10g27840
rosa_chinensis RchiOBHm_Chr5g0001781
rosa_laevigata RLG00000030972
rosa_multiflora Rmu_ssc0000237.1_g000013
rosa_roxburghii Rroxscaffold_1G00071240 Rroxscaffold_1G00074550
rosa_rugosa Rorug04G0393000
rosa_samantha Rh5BG017700 Rh5DG015800
rosa_wichuraiana Rw5G001380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 8, 629
AclI AACGTT 1 cut(s) 354
AclWI GGATC 3 cut(s) 983, 992, 1005
AcsI RAATTY 3 cut(s) 172, 830, 877
AcuI CTGAAG 3 cut(s) 72, 768, 1065
AfaI GTAC 4 cut(s) 186, 384, 429, 818
AfiI CCNNNNNNNGG 2 cut(s) 282, 679
AgsI TTSAA 5 cut(s) 82, 247, 523, 836, 978
AjnI CCWGG 1 cut(s) 416
AleI CACNNNNGTG 1 cut(s) 405
AluBI AGCT 4 cut(s) 92, 152, 543, 917
AluI AGCT 4 cut(s) 92, 152, 543, 917
Alw21I GWGCWC 1 cut(s) 924
Alw26I GTCTC 3 cut(s) 66, 482, 1030
AlwI GGATC 3 cut(s) 983, 992, 1005
AlwNI CAGNNNCTG 1 cut(s) 1043
AoxI GGCC 4 cut(s) 288, 709, 863, 939
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 3 cut(s) 172, 830, 877
ArsI GACNNNNNNTTYG 1 cut(s) 36
Asp700I GAANNNNTTC 1 cut(s) 881
AspS9I GGNCC 2 cut(s) 75, 709
AsuHPI GGTGA 3 cut(s) 350, 821, 1020
AvaII GGWCC 1 cut(s) 75
AxyI CCTNAGG 1 cut(s) 780
BamHI GGATCC 1 cut(s) 997
BbsI GAAGAC 2 cut(s) 12, 89
Bbv12I GWGCWC 1 cut(s) 924
BbvI GCAGC 1 cut(s) 17
BccI CCATC 3 cut(s) 152, 166, 356
BciT130I CCWGG 1 cut(s) 418
BciVI GTATCC 1 cut(s) 361
BcoDI GTCTC 3 cut(s) 66, 482, 1030
BfaI CTAG 1 cut(s) 309
BfuI GTATCC 1 cut(s) 361
BisI GCNGC 2 cut(s) 6, 9
BlpI GCTNAGC 2 cut(s) 618, 918
BlsI GCNGC 2 cut(s) 7, 10
Bme1390I CCNGG 1 cut(s) 418
Bme18I GGWCC 1 cut(s) 75
BmgT120I GGNCC 2 cut(s) 75, 709
BmiI GGNNCC 3 cut(s) 450, 959, 999
BmrFI CCNGG 1 cut(s) 418
BmsI GCATC 1 cut(s) 543
BpiI GAAGAC 2 cut(s) 12, 89
BpmI CTGGAG 1 cut(s) 825
Bpu1102I GCTNAGC 2 cut(s) 618, 918
BsaJI CCNNGG 1 cut(s) 993
Bsc4I CCNNNNNNNGG 2 cut(s) 282, 679
Bse1I ACTGG 2 cut(s) 435, 808
Bse21I CCTNAGG 1 cut(s) 780
Bse3DI GCAATG 1 cut(s) 624
BseBI CCWGG 1 cut(s) 418
BseDI CCNNGG 1 cut(s) 993
BseLI CCNNNNNNNGG 2 cut(s) 282, 679
BseMI GCAATG 1 cut(s) 624
BseMII CTCAG 6 cut(s) 162, 285, 528, 632, 771, 909
BseNI ACTGG 2 cut(s) 435, 808
BseRI GAGGAG 3 cut(s) 245, 520, 960
BseXI GCAGC 1 cut(s) 17
BsgI GTGCAG 1 cut(s) 461
Bsh1285I CGRYCG 2 cut(s) 406, 633
BshFI GGCC 4 cut(s) 290, 711, 865, 941
BsiEI CGRYCG 2 cut(s) 406, 633
BsiHKAI GWGCWC 1 cut(s) 924
BslI CCNNNNNNNGG 2 cut(s) 282, 679
BsmAI GTCTC 3 cut(s) 66, 482, 1030
BsmBI CGTCTC 1 cut(s) 66
BsnI GGCC 4 cut(s) 290, 711, 865, 941
Bsp1286I GDGCHC 1 cut(s) 924
Bsp143I GATC 3 cut(s) 604, 988, 997
Bsp1720I GCTNAGC 2 cut(s) 618, 918
BspACI CCGC 2 cut(s) 8, 629
BspANI GGCC 4 cut(s) 290, 711, 865, 941
BspCNI CTCAG 6 cut(s) 161, 286, 529, 631, 772, 910
BspLI GGNNCC 3 cut(s) 450, 959, 999
BspPI GGATC 3 cut(s) 983, 992, 1005
BspQI GCTCTTC 1 cut(s) 58
BsrDI GCAATG 1 cut(s) 624
BsrI ACTGG 2 cut(s) 435, 808
BssECI CCNNGG 1 cut(s) 993
BssMI GATC 3 cut(s) 604, 988, 997
BssT1I CCWWGG 1 cut(s) 993
Bst2UI CCWGG 1 cut(s) 418
Bst4CI ACNGT 5 cut(s) 28, 373, 407, 652, 926
Bst6I CTCTTC 3 cut(s) 58, 207, 505
BstAPI GCANNNNNTGC 1 cut(s) 562
BstC8I GCNNGC 3 cut(s) 277, 774, 943
BstDEI CTNAG 6 cut(s) 148, 294, 537, 618, 780, 918
BstKTI GATC 3 cut(s) 607, 991, 1000
BstMAI GTCTC 3 cut(s) 66, 482, 1030
BstMBI GATC 3 cut(s) 604, 988, 997
BstMCI CGRYCG 2 cut(s) 406, 633
BstMWI GCNNNNNNNGC 1 cut(s) 562
BstNI CCWGG 1 cut(s) 418
BstNSI RCATGY 1 cut(s) 191
BstSCI CCNGG 1 cut(s) 416
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 2 cut(s) 12, 89
BstX2I RGATCY 2 cut(s) 988, 997
BstYI RGATCY 2 cut(s) 988, 997
Bsu36I CCTNAGG 1 cut(s) 780
BsuI GTATCC 1 cut(s) 361
BsuRI GGCC 4 cut(s) 290, 711, 865, 941
BtsI GCAGTG 1 cut(s) 286
BtsIMutI CAGTG 4 cut(s) 286, 378, 801, 922
Cac8I GCNNGC 3 cut(s) 277, 774, 943
CaiI CAGNNNCTG 1 cut(s) 1043
Cfr13I GGNCC 2 cut(s) 75, 709
Csp6I GTAC 4 cut(s) 185, 383, 428, 817
CviAII CATG 3 cut(s) 188, 571, 713
CviQI GTAC 4 cut(s) 185, 383, 428, 817
DdeI CTNAG 6 cut(s) 148, 294, 537, 618, 780, 918
DpnI GATC 3 cut(s) 606, 990, 999
DpnII GATC 3 cut(s) 604, 988, 997
Eam1104I CTCTTC 3 cut(s) 58, 207, 505
EarI CTCTTC 3 cut(s) 58, 207, 505
Eco130I CCWWGG 1 cut(s) 993
Eco147I AGGCCT 2 cut(s) 290, 941
Eco47I GGWCC 1 cut(s) 75
Eco57I CTGAAG 3 cut(s) 72, 768, 1065
Eco81I CCTNAGG 1 cut(s) 780
EcoO109I RGGNCCY 1 cut(s) 75
EcoRII CCWGG 1 cut(s) 416
EcoT14I CCWWGG 1 cut(s) 993
EcoT22I ATGCAT 1 cut(s) 718
ErhI CCWWGG 1 cut(s) 993
Esp3I CGTCTC 1 cut(s) 66
FaeI CATG 3 cut(s) 191, 574, 716
FatI CATG 3 cut(s) 187, 570, 712
FauNDI CATATG 1 cut(s) 727
Fnu4HI GCNGC 2 cut(s) 6, 9
Fsp4HI GCNGC 2 cut(s) 6, 9
FspBI CTAG 1 cut(s) 309
GluI GCNGC 2 cut(s) 6, 9
GsuI CTGGAG 1 cut(s) 825
HaeIII GGCC 4 cut(s) 290, 711, 865, 941
Hin1II CATG 3 cut(s) 191, 574, 716
HinfI GANTC 6 cut(s) 13, 124, 233, 757, 1013, 1040
HphI GGTGA 3 cut(s) 350, 821, 1020
Hpy166II GTNNAC 1 cut(s) 341
Hpy188I TCNGA 7 cut(s) 123, 262, 295, 697, 762, 897, 1045
Hpy188III TCNNGA 4 cut(s) 168, 779, 843, 858
Hpy8I GTNNAC 1 cut(s) 341
Hpy99I CGWCG 1 cut(s) 28
HpyAV CCTTC 5 cut(s) 315, 743, 855, 931, 1040
HpyCH4III ACNGT 5 cut(s) 28, 373, 407, 652, 926
HpyCH4IV ACGT 2 cut(s) 354, 900
HpyCH4V TGCA 9 cut(s) 35, 138, 191, 443, 478, 529, 556, 716, 1079
HpyF10VI GCNNNNNNNGC 1 cut(s) 562
HpyF3I CTNAG 6 cut(s) 148, 294, 537, 618, 780, 918
HpySE526I ACGT 2 cut(s) 354, 900
Hsp92II CATG 3 cut(s) 191, 574, 716
Kzo9I GATC 3 cut(s) 604, 988, 997
LguI GCTCTTC 1 cut(s) 58
LmnI GCTCC 1 cut(s) 781
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 1 cut(s) 543
MaeI CTAG 1 cut(s) 309
MaeII ACGT 2 cut(s) 354, 900
MaeIII GTNAC 1 cut(s) 809
MalI GATC 3 cut(s) 606, 990, 999
MboI GATC 3 cut(s) 604, 988, 997
MfeI CAATTG 1 cut(s) 978
MflI RGATCY 2 cut(s) 988, 997
MhlI GDGCHC 1 cut(s) 924
MluCI AATT 7 cut(s) 172, 578, 767, 830, 853, 877, 978
MlyI GAGTC 3 cut(s) 7, 242, 1022
Mph1103I ATGCAT 1 cut(s) 718
MroXI GAANNNNTTC 1 cut(s) 881
MseI TTAA 2 cut(s) 378, 665
MslI CAYNNNNRTG 2 cut(s) 405, 483
MspA1I CMGCKG 1 cut(s) 8
MspR9I CCNGG 1 cut(s) 418
MunI CAATTG 1 cut(s) 978
MvaI CCWGG 1 cut(s) 418
MwoI GCNNNNNNNGC 1 cut(s) 562
NdeI CATATG 1 cut(s) 727
NdeII GATC 3 cut(s) 604, 988, 997
NlaIII CATG 3 cut(s) 191, 574, 716
NlaIV GGNNCC 3 cut(s) 450, 959, 999
NmuCI GTSAC 1 cut(s) 809
NsiI ATGCAT 1 cut(s) 718
NspI RCATGY 1 cut(s) 191
OliI CACNNNNGTG 1 cut(s) 405
PceI AGGCCT 2 cut(s) 290, 941
PciSI GCTCTTC 1 cut(s) 58
PdmI GAANNNNTTC 1 cut(s) 881
PfeI GAWTC 3 cut(s) 124, 757, 1040
PflFI GACNNNGTC 2 cut(s) 16, 28
PkrI GCNGC 2 cut(s) 7, 10
PleI GAGTC 3 cut(s) 7, 241, 1021
PpsI GAGTC 3 cut(s) 7, 241, 1021
PpuMI RGGWCCY 1 cut(s) 75
Psp1406I AACGTT 1 cut(s) 354
Psp5II RGGWCCY 1 cut(s) 75
Psp6I CCWGG 1 cut(s) 416
PspGI CCWGG 1 cut(s) 416
PspN4I GGNNCC 3 cut(s) 450, 959, 999
PspPI GGNCC 2 cut(s) 75, 709
PspPPI RGGWCCY 1 cut(s) 75
PstNI CAGNNNCTG 1 cut(s) 1043
PsuI RGATCY 2 cut(s) 988, 997
PsyI GACNNNGTC 2 cut(s) 16, 28
RsaI GTAC 4 cut(s) 186, 384, 429, 818
RsaNI GTAC 4 cut(s) 185, 383, 428, 817
RseI CAYNNNNRTG 2 cut(s) 405, 483
SapI GCTCTTC 1 cut(s) 58
SaqAI TTAA 2 cut(s) 378, 665
SatI GCNGC 2 cut(s) 6, 9
Sau3AI GATC 3 cut(s) 604, 988, 997
Sau96I GGNCC 2 cut(s) 75, 709
SchI GAGTC 3 cut(s) 7, 242, 1022
ScrFI CCNGG 1 cut(s) 418
SduI GDGCHC 1 cut(s) 924
SfaNI GCATC 1 cut(s) 543
SinI GGWCC 1 cut(s) 75
SmiMI CAYNNNNRTG 2 cut(s) 405, 483
Sse9I AATT 7 cut(s) 172, 578, 767, 830, 853, 877, 978
SseBI AGGCCT 2 cut(s) 290, 941
SsiI CCGC 2 cut(s) 8, 629
SspMI CTAG 1 cut(s) 309
StuI AGGCCT 2 cut(s) 290, 941
StyD4I CCNGG 1 cut(s) 416
StyI CCWWGG 1 cut(s) 993
TaaI ACNGT 5 cut(s) 28, 373, 407, 652, 926
TaiI ACGT 2 cut(s) 357, 903
TaqI TCGA 4 cut(s) 23, 722, 859, 885
TasI AATT 7 cut(s) 172, 578, 767, 830, 853, 877, 978
TatI WGTACW 2 cut(s) 427, 816
TauI GCSGC 1 cut(s) 11
TfiI GAWTC 3 cut(s) 124, 757, 1040
Tru1I TTAA 2 cut(s) 378, 665
Tru9I TTAA 2 cut(s) 378, 665
TscAI CASTG 4 cut(s) 286, 378, 808, 929
TseFI GTSAC 1 cut(s) 809
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 809
TspDTI ATGAA 5 cut(s) 222, 279, 843, 927, 950
TspGWI ACGGA 2 cut(s) 380, 1063
TspRI CASTG 4 cut(s) 286, 378, 808, 929
Tth111I GACNNNGTC 2 cut(s) 16, 28
VpaK11BI GGWCC 1 cut(s) 75
XapI RAATTY 3 cut(s) 172, 830, 877
XceI RCATGY 1 cut(s) 191
XmnI GAANNNNTTC 1 cut(s) 881
XspI CTAG 1 cut(s) 309
Zsp2I ATGCAT 1 cut(s) 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.