Rroxscaffold_1G00074550

Belongs to the alternative oxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0014010
Physical Location & Seq
Reverse (-)
95501586 .. 95505052
3467 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00074550.1

Sequence Viewer

Length: 1050 bp
ATGGCAGCGGCGACTCTGTCTTCGACAGTGTTTGCAATCTCAACTTCCTGCCCTTCTTCTTCTTCTTCTTCTTCTTCGTCTCTCAAAGCAAGGACCTTGAAGACTTCAGCTTTTTCTTCTTCGTCCTCGCTCTGCTCTCTGAATCGTTTTCCTTGCAATCCCATCTCAGCTCGTCCATCGTGTTCCAGAAATTTGTATAGGGTACATGCAACTATTCTCCAAGATGAAGAAGAGAAAGTGCAGTGGGGGGCCTCTGAGAGTGAGCCTTCTAGTGATTTTGAGAAATGGGTTATCAAGGGCGAACAATCCATCAACGTTTTCCTTACGGATACAGTGATTAAGGTACTTGATACTCTTTACCACGACCGTGATTATGCGAGGTTCTTTGTACTGGAAACTATTGCAAGGGTTCCCTACTTCGCCTTTATGTCTGTTCTACACATGTATGAAACTTTTGGCTGGTGGAGAAGAAGAGATTATTTGAAAGTGCATTTTGCTGAGAGCTGGAATGAGATGCACCACTTGCTTATCATGGAAGAATTGGGAGGAAATGCTTGGTGGTTTGATCGCTTTCTTGCTCAGCACATTGCGGTCTTCTATTACTTTATGACAGTTTTTATGTATATAATAAGCCCACGAATGGCATATCACTTCTCTGAATGTGTAGAGGGCCATGCATTTTCAACATATGACAAATTTATCAAGGCTGAAGGAGAGAATCTGAAAAAATTGCCTGCTCCTGAGGTTGCTGTAAAATACTACACTGGAGGTGACTTGTACTTGTTTGATGAATTTCAAACTTCCAGACCTCCCAATTCTCGAAGGCCGAAAATAGAGAATTTGTTCGATGTATTTCTGAACGTAAGAGATGATGAAGCTGAGCACTGTAAGACGATGAAGGCCTGCCAAACTCACGGGAACCTCTTTTCTCCTCATTCAATTGAAGAAGATCCCTTGGAAGAAGAGTCTATCTGTGTCGCTCCTCAAACAGATTGTGAAGGTATTGTAGATTGTATTACAAAATCCGTTCCAACGAAATCAGCAGAGTGA

Protein Analysis

349

Amino Acids

39.98

Weight (kDa)

5.51

Isoelectric Point (pI)

58.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AOX PF01786 107 - 303 1.3e-41 Alternative oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014010)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G22260
fragaria_vesca FvH4_3g01250 FvH4_3g01250 FvH4_3g01250
malus_domestica MD05G1354300.v1.1 MD10G1328600.v1.1
prunus_persica Prupe.4G013400_v2.0.a1
pyrus_communis pycom10g27840
rosa_chinensis RchiOBHm_Chr5g0001781
rosa_laevigata RLG00000030972
rosa_multiflora Rmu_ssc0000237.1_g000013
rosa_roxburghii Rroxscaffold_1G00071240 Rroxscaffold_1G00074550
rosa_rugosa Rorug04G0393000
rosa_samantha Rh5BG017700 Rh5DG015800
rosa_wichuraiana Rw5G001380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 8, 590
AclI AACGTT 1 cut(s) 315
AclWI GGATC 1 cut(s) 944
AcsI RAATTY 4 cut(s) 190, 695, 791, 838
AcuI CTGAAG 2 cut(s) 90, 729
AfaI GTAC 4 cut(s) 204, 345, 390, 779
AfiI CCNNNNNNNGG 1 cut(s) 640
AflIII ACRYGT 1 cut(s) 441
AgsI TTSAA 6 cut(s) 100, 484, 684, 797, 939, 944
AleI CACNNNNGTG 1 cut(s) 366
AluBI AGCT 4 cut(s) 110, 170, 504, 878
AluI AGCT 4 cut(s) 110, 170, 504, 878
Alw21I GWGCWC 1 cut(s) 885
Alw26I GTCTC 1 cut(s) 84
AlwI GGATC 1 cut(s) 944
AoxI GGCC 4 cut(s) 249, 670, 824, 900
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 4 cut(s) 190, 695, 791, 838
ArsI GACNNNNNNTTYG 1 cut(s) 36
Asp700I GAANNNNTTC 1 cut(s) 842
AspS9I GGNCC 3 cut(s) 93, 249, 670
AsuHPI GGTGA 1 cut(s) 782
AvaII GGWCC 1 cut(s) 93
AxyI CCTNAGG 1 cut(s) 741
BbsI GAAGAC 3 cut(s) 12, 107, 586
Bbv12I GWGCWC 1 cut(s) 885
BbvI GCAGC 1 cut(s) 17
BccI CCATC 3 cut(s) 170, 184, 317
BciVI GTATCC 1 cut(s) 322
BcoDI GTCTC 1 cut(s) 84
BfaI CTAG 1 cut(s) 270
BfuI GTATCC 1 cut(s) 322
BisI GCNGC 2 cut(s) 6, 9
BlpI GCTNAGC 2 cut(s) 579, 879
BlsI GCNGC 2 cut(s) 7, 10
Bme18I GGWCC 1 cut(s) 93
BmgT120I GGNCC 3 cut(s) 93, 249, 670
BmiI GGNNCC 3 cut(s) 250, 411, 920
BmsI GCATC 1 cut(s) 504
BpiI GAAGAC 3 cut(s) 12, 107, 586
BpmI CTGGAG 1 cut(s) 786
Bpu1102I GCTNAGC 2 cut(s) 579, 879
BsaJI CCNNGG 1 cut(s) 954
Bsc4I CCNNNNNNNGG 1 cut(s) 640
Bse1I ACTGG 2 cut(s) 396, 769
Bse21I CCTNAGG 1 cut(s) 741
Bse3DI GCAATG 1 cut(s) 585
BseDI CCNNGG 1 cut(s) 954
BseLI CCNNNNNNNGG 1 cut(s) 640
BseMI GCAATG 1 cut(s) 585
BseMII CTCAG 6 cut(s) 180, 246, 489, 593, 732, 870
BseNI ACTGG 2 cut(s) 396, 769
BseRI GAGGAG 2 cut(s) 921, 972
BseXI GCAGC 1 cut(s) 17
BsgI GTGCAG 1 cut(s) 260
Bsh1285I CGRYCG 1 cut(s) 367
BshFI GGCC 4 cut(s) 251, 672, 826, 902
BsiEI CGRYCG 1 cut(s) 367
BsiHKAI GWGCWC 1 cut(s) 885
BslI CCNNNNNNNGG 1 cut(s) 640
BsmAI GTCTC 1 cut(s) 84
BsmBI CGTCTC 1 cut(s) 84
BsnI GGCC 4 cut(s) 251, 672, 826, 902
Bsp1286I GDGCHC 1 cut(s) 885
Bsp143I GATC 2 cut(s) 565, 949
Bsp1720I GCTNAGC 2 cut(s) 579, 879
BspACI CCGC 2 cut(s) 8, 590
BspANI GGCC 4 cut(s) 251, 672, 826, 902
BspCNI CTCAG 6 cut(s) 179, 247, 490, 592, 733, 871
BspLI GGNNCC 3 cut(s) 250, 411, 920
BspPI GGATC 1 cut(s) 944
BsrDI GCAATG 1 cut(s) 585
BsrI ACTGG 2 cut(s) 396, 769
BssECI CCNNGG 1 cut(s) 954
BssMI GATC 2 cut(s) 565, 949
BssT1I CCWWGG 1 cut(s) 954
Bst4CI ACNGT 5 cut(s) 28, 334, 368, 613, 887
Bst6I CTCTTC 3 cut(s) 225, 466, 957
BstAPI GCANNNNNTGC 1 cut(s) 523
BstC8I GCNNGC 2 cut(s) 735, 904
BstDEI CTNAG 6 cut(s) 166, 255, 498, 579, 741, 879
BstKTI GATC 2 cut(s) 568, 952
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 2 cut(s) 565, 949
BstMCI CGRYCG 1 cut(s) 367
BstMWI GCNNNNNNNGC 1 cut(s) 523
BstNSI RCATGY 2 cut(s) 209, 445
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 3 cut(s) 12, 107, 586
BstX2I RGATCY 1 cut(s) 949
BstYI RGATCY 1 cut(s) 949
Bsu36I CCTNAGG 1 cut(s) 741
BsuI GTATCC 1 cut(s) 322
BsuRI GGCC 4 cut(s) 251, 672, 826, 902
BtsI GCAGTG 1 cut(s) 248
BtsIMutI CAGTG 5 cut(s) 33, 248, 339, 762, 883
Cac8I GCNNGC 2 cut(s) 735, 904
Cfr13I GGNCC 3 cut(s) 93, 249, 670
Csp6I GTAC 4 cut(s) 203, 344, 389, 778
CviAII CATG 4 cut(s) 206, 442, 532, 674
CviQI GTAC 4 cut(s) 203, 344, 389, 778
DdeI CTNAG 6 cut(s) 166, 255, 498, 579, 741, 879
DpnI GATC 2 cut(s) 567, 951
DpnII GATC 2 cut(s) 565, 949
Eam1104I CTCTTC 3 cut(s) 225, 466, 957
EarI CTCTTC 3 cut(s) 225, 466, 957
Eco130I CCWWGG 1 cut(s) 954
Eco147I AGGCCT 1 cut(s) 902
Eco47I GGWCC 1 cut(s) 93
Eco57I CTGAAG 2 cut(s) 90, 729
Eco81I CCTNAGG 1 cut(s) 741
EcoO109I RGGNCCY 2 cut(s) 93, 249
EcoT14I CCWWGG 1 cut(s) 954
EcoT22I ATGCAT 1 cut(s) 679
ErhI CCWWGG 1 cut(s) 954
Esp3I CGTCTC 1 cut(s) 84
FaeI CATG 4 cut(s) 209, 445, 535, 677
FatI CATG 4 cut(s) 205, 441, 531, 673
FauNDI CATATG 1 cut(s) 688
Fnu4HI GCNGC 2 cut(s) 6, 9
Fsp4HI GCNGC 2 cut(s) 6, 9
FspBI CTAG 1 cut(s) 270
GluI GCNGC 2 cut(s) 6, 9
GsuI CTGGAG 1 cut(s) 786
HaeIII GGCC 4 cut(s) 251, 672, 826, 902
Hin1II CATG 4 cut(s) 209, 445, 535, 677
HinfI GANTC 4 cut(s) 13, 142, 718, 965
HphI GGTGA 1 cut(s) 782
Hpy188I TCNGA 5 cut(s) 141, 256, 658, 723, 858
Hpy188III TCNNGA 4 cut(s) 186, 740, 804, 819
HpyAV CCTTC 6 cut(s) 63, 276, 704, 816, 892, 992
HpyCH4III ACNGT 5 cut(s) 28, 334, 368, 613, 887
HpyCH4IV ACGT 2 cut(s) 315, 861
HpyCH4V TGCA 8 cut(s) 35, 156, 209, 241, 404, 490, 517, 677
HpyF10VI GCNNNNNNNGC 1 cut(s) 523
HpyF3I CTNAG 6 cut(s) 166, 255, 498, 579, 741, 879
HpySE526I ACGT 2 cut(s) 315, 861
Hsp92II CATG 4 cut(s) 209, 445, 535, 677
Kzo9I GATC 2 cut(s) 565, 949
LmnI GCTCC 2 cut(s) 742, 985
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 1 cut(s) 504
MaeI CTAG 1 cut(s) 270
MaeII ACGT 2 cut(s) 315, 861
MaeIII GTNAC 1 cut(s) 770
MalI GATC 2 cut(s) 567, 951
MboI GATC 2 cut(s) 565, 949
MfeI CAATTG 1 cut(s) 939
MflI RGATCY 1 cut(s) 949
MhlI GDGCHC 1 cut(s) 885
MluCI AATT 8 cut(s) 190, 539, 695, 728, 791, 814, 838, 939
MlyI GAGTC 2 cut(s) 7, 974
Mph1103I ATGCAT 1 cut(s) 679
MroXI GAANNNNTTC 1 cut(s) 842
MseI TTAA 1 cut(s) 339
MslI CAYNNNNRTG 2 cut(s) 366, 444
MspA1I CMGCKG 1 cut(s) 8
MunI CAATTG 1 cut(s) 939
MwoI GCNNNNNNNGC 1 cut(s) 523
NdeI CATATG 1 cut(s) 688
NdeII GATC 2 cut(s) 565, 949
NlaIII CATG 4 cut(s) 209, 445, 535, 677
NlaIV GGNNCC 3 cut(s) 250, 411, 920
NmuCI GTSAC 1 cut(s) 770
NsiI ATGCAT 1 cut(s) 679
NspI RCATGY 2 cut(s) 209, 445
OliI CACNNNNGTG 1 cut(s) 366
PceI AGGCCT 1 cut(s) 902
PciI ACATGT 1 cut(s) 441
PdmI GAANNNNTTC 1 cut(s) 842
PfeI GAWTC 2 cut(s) 142, 718
PflFI GACNNNGTC 1 cut(s) 16
PkrI GCNGC 2 cut(s) 7, 10
PleI GAGTC 2 cut(s) 7, 973
PpsI GAGTC 2 cut(s) 7, 973
PpuMI RGGWCCY 1 cut(s) 93
PscI ACATGT 1 cut(s) 441
Psp1406I AACGTT 1 cut(s) 315
Psp5II RGGWCCY 1 cut(s) 93
PspN4I GGNNCC 3 cut(s) 250, 411, 920
PspPI GGNCC 3 cut(s) 93, 249, 670
PspPPI RGGWCCY 1 cut(s) 93
PsuI RGATCY 1 cut(s) 949
PsyI GACNNNGTC 1 cut(s) 16
RsaI GTAC 4 cut(s) 204, 345, 390, 779
RsaNI GTAC 4 cut(s) 203, 344, 389, 778
RseI CAYNNNNRTG 2 cut(s) 366, 444
SaqAI TTAA 1 cut(s) 339
SatI GCNGC 2 cut(s) 6, 9
Sau3AI GATC 2 cut(s) 565, 949
Sau96I GGNCC 3 cut(s) 93, 249, 670
SchI GAGTC 2 cut(s) 7, 974
SduI GDGCHC 1 cut(s) 885
SfaNI GCATC 1 cut(s) 504
SinI GGWCC 1 cut(s) 93
SmiMI CAYNNNNRTG 2 cut(s) 366, 444
Sse9I AATT 8 cut(s) 190, 539, 695, 728, 791, 814, 838, 939
SseBI AGGCCT 1 cut(s) 902
SsiI CCGC 2 cut(s) 8, 590
SspMI CTAG 1 cut(s) 270
StuI AGGCCT 1 cut(s) 902
StyI CCWWGG 1 cut(s) 954
TaaI ACNGT 5 cut(s) 28, 334, 368, 613, 887
TaiI ACGT 2 cut(s) 318, 864
TaqI TCGA 3 cut(s) 23, 820, 846
TasI AATT 8 cut(s) 190, 539, 695, 728, 791, 814, 838, 939
TatI WGTACW 2 cut(s) 388, 777
TauI GCSGC 1 cut(s) 11
TfiI GAWTC 2 cut(s) 142, 718
Tru1I TTAA 1 cut(s) 339
Tru9I TTAA 1 cut(s) 339
TscAI CASTG 5 cut(s) 33, 248, 339, 769, 890
TseFI GTSAC 1 cut(s) 770
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 770
TspDTI ATGAA 5 cut(s) 240, 462, 804, 888, 911
TspGWI ACGGA 2 cut(s) 341, 1015
TspRI CASTG 5 cut(s) 33, 248, 339, 769, 890
Tth111I GACNNNGTC 1 cut(s) 16
VpaK11BI GGWCC 1 cut(s) 93
XapI RAATTY 4 cut(s) 190, 695, 791, 838
XceI RCATGY 2 cut(s) 209, 445
XmnI GAANNNNTTC 1 cut(s) 842
XspI CTAG 1 cut(s) 270
Zsp2I ATGCAT 1 cut(s) 679
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.