Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0014010

Physical Location & Seq

Genomic Coordinates Forward (+)

624895 .. 628887

Gene Structure 3993 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G013400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGCAGCGGCGACTTTGTCTTCCACGGTGTTTGCAATCTCAACCTCCTGCTCTTCTTCGTCTCTCAAAGCAAGGAACTTCAAGAACTTAGCTTGCTCCACGTTTTGTTCTCAGAATCGTATTCCTTACAATCCCATTTCTGCTCGTCCATCAATTTCCAGAATTCGTGCAACTATTCTGCAAGAAGATGAAGAGAAAGTGATAGTGGAGGAATCCTTTGAGTTCAAGGCTTCTTCTCCCTCAGATGAAGTGAAATCAAGCAGTGGGGGCCCATCAGAAAGTTCGTCTTCAAGTACTTTTGAGGGCTGGGTTATTAAATGTGAACAAACCATCAACATATTCCTTACGGATACAGTCATAAAGATACTTGATACTCTGTACCGTGACCGAGATTATGCAAGGTTTTTTGTACTGGAAACCATTGCAAGGGTTCCTTACTTTGCCTTTATGTCTGTTTTGCACATGTATGAGAGTTTTGGCTGGTGGAGAAGAGCAGATTATCTGAAAGTGCATTTTGCTGAGAGCTGGAATGAGATGCACCACTTGCTTATCATGGAAGAATTGGGGGGAAATGCTTGGTGGTTTGACCGCTTTCTTGCTCAGCATATTGCGATCTTCTATTATTTTATGACGGCCTTTATGTATATAATAAGCCCAAGAATGGCATATCACTTCTCTGAATGTGTAGAGGGCCATGCATTTTCAACTTACGACAAGTTTATCAAGGCCAGAGGAGAGGATTTGAAAAAGTTGCCTCCTCCTGAGGTTGCTGTAAAATACTACACTAGCGGTGACTTGTACTTATTTGATGAATTTCAAACTTCCAGAGCTCCCAATTCTCGAAGGCCAAAAATAGAGAATTTGTACGACGTGTTTCTGAACATAAGAGATGACGAAGCTGAACACTGTAAGACGATGAAGGCTTGCCAGACTCACGGGAACCTGTGGTCTCCTCATTCCCGTGCAGAAGAAGAAGATGACGCCCCGTGCATCATTCCTCAAACAGACTGTGAAGGTATTGTAGATTGTATAACAAAATCCGTGACAACAAAGCCAGAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006629 GO:0006720 GO:0006721 GO:0006996 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009579 GO:0009657 GO:0009916 GO:0009987 GO:0016043 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016491 GO:0016679 GO:0016682 GO:0042440 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044464 GO:0046148 GO:0055114 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AOX

Protein Analysis

355

Amino Acids

40.68

Weight (kDa)

5.46

Isoelectric Point (pI)

56.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22260
fragaria_vesca	FvH4_3g01250 FvH4_3g01250 FvH4_3g01250
malus_domestica	MD05G1354300.v1.1 MD10G1328600.v1.1
prunus_persica	Prupe.4G013400_v2.0.a1
pyrus_communis	pycom10g27840
rosa_chinensis	RchiOBHm_Chr5g0001781
rosa_laevigata	RLG00000030972
rosa_multiflora	Rmu_ssc0000237.1_g000013
rosa_roxburghii	Rroxscaffold_1G00071240 Rroxscaffold_1G00074550
rosa_rugosa	Rorug04G0393000
rosa_samantha	Rh5BG017700 Rh5DG015800
rosa_wichuraiana	Rw5G001380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	8, 589, 789
AcsI	RAATTY	3 cut(s)	162, 812, 859
AcyI	GRCGYC	1 cut(s)	981
AfaI	GTAC	5 cut(s)	295, 380, 411, 800, 866
AfiI	CCNNNNNNNGG	2 cut(s)	426, 661
AflIII	ACRYGT	2 cut(s)	462, 870
AgsI	TTSAA	6 cut(s)	82, 226, 291, 705, 745, 818
AjiI	CACGTC	1 cut(s)	871
AluBI	AGCT	4 cut(s)	92, 525, 830, 899
AluI	AGCT	4 cut(s)	92, 525, 830, 899
Alw21I	GWGCWC	1 cut(s)	832
Alw26I	GTCTC	2 cut(s)	66, 954
AoxI	GGCC	5 cut(s)	268, 633, 691, 726, 845
ApaI	GGGCCC	1 cut(s)	272
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	3 cut(s)	162, 812, 859
AspS9I	GGNCC	3 cut(s)	268, 269, 691
AsuHPI	GGTGA	1 cut(s)	803
AxyI	CCTNAGG	1 cut(s)	762
BaeGI	GKGCMC	1 cut(s)	272
BanII	GRGCYC	2 cut(s)	272, 832
BbsI	GAAGAC	2 cut(s)	12, 279
Bbv12I	GWGCWC	1 cut(s)	832
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	3 cut(s)	157, 280, 338
BceAI	ACGGC	1 cut(s)	648
BciVI	GTATCC	1 cut(s)	343
BcoDI	GTCTC	2 cut(s)	66, 954
BfaI	CTAG	1 cut(s)	786
BfuI	GTATCC	1 cut(s)	343
BisI	GCNGC	2 cut(s)	6, 9
BlpI	GCTNAGC	1 cut(s)	600
BlsI	GCNGC	2 cut(s)	7, 10
BmcAI	AGTACT	1 cut(s)	295
BmgBI	CACGTC	1 cut(s)	871
BmgT120I	GGNCC	3 cut(s)	268, 269, 691
BmiI	GGNNCC	4 cut(s)	269, 270, 432, 941
BmsI	GCATC	2 cut(s)	525, 999
BpiI	GAAGAC	2 cut(s)	12, 279
Bpu1102I	GCTNAGC	1 cut(s)	600
BsaHI	GRCGYC	1 cut(s)	981
BsaI	GGTCTC	1 cut(s)	954
BsaJI	CCNNGG	1 cut(s)	24
Bsc4I	CCNNNNNNNGG	2 cut(s)	426, 661
Bse1I	ACTGG	1 cut(s)	417
Bse21I	CCTNAGG	1 cut(s)	762
Bse3DI	GCAATG	1 cut(s)	420
BseDI	CCNNGG	1 cut(s)	24
BseLI	CCNNNNNNNGG	2 cut(s)	426, 661
BseMI	GCAATG	1 cut(s)	420
BseMII	CTCAG	5 cut(s)	125, 255, 510, 614, 753
BseNI	ACTGG	1 cut(s)	417
BseRI	GAGGAG	3 cut(s)	747, 747, 942
BseSI	GKGCMC	1 cut(s)	272
BseXI	GCAGC	1 cut(s)	17
BseYI	CCCAGC	1 cut(s)	306
BsgI	GTGCAG	1 cut(s)	984
BshFI	GGCC	5 cut(s)	270, 635, 693, 728, 847
BsiHKAI	GWGCWC	1 cut(s)	832
BslI	CCNNNNNNNGG	2 cut(s)	426, 661
BsmAI	GTCTC	2 cut(s)	66, 954
BsmBI	CGTCTC	1 cut(s)	66
BsnI	GGCC	5 cut(s)	270, 635, 693, 728, 847
Bso31I	GGTCTC	1 cut(s)	954
Bsp120I	GGGCCC	1 cut(s)	268
Bsp1286I	GDGCHC	2 cut(s)	272, 832
Bsp143I	GATC	1 cut(s)	612
Bsp1720I	GCTNAGC	1 cut(s)	600
BspACI	CCGC	3 cut(s)	8, 589, 789
BspANI	GGCC	5 cut(s)	270, 635, 693, 728, 847
BspCNI	CTCAG	5 cut(s)	124, 254, 511, 613, 754
BspLI	GGNNCC	4 cut(s)	269, 270, 432, 941
BspQI	GCTCTTC	2 cut(s)	58, 484
BspTNI	GGTCTC	1 cut(s)	954
BsrDI	GCAATG	1 cut(s)	420
BsrI	ACTGG	1 cut(s)	417
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	1 cut(s)	612
BssNI	GRCGYC	1 cut(s)	981
Bst4CI	ACNGT	5 cut(s)	28, 355, 383, 908, 1010
Bst6I	CTCTTC	3 cut(s)	58, 186, 484
BstACI	GRCGYC	1 cut(s)	981
BstAPI	GCANNNNNTGC	1 cut(s)	544
BstC8I	GCNNGC	2 cut(s)	94, 925
BstDEI	CTNAG	6 cut(s)	88, 111, 241, 519, 600, 762
BstDSI	CCRYGG	1 cut(s)	24
BstKTI	GATC	1 cut(s)	615
BstMAI	GTCTC	2 cut(s)	66, 954
BstMBI	GATC	1 cut(s)	612
BstMWI	GCNNNNNNNGC	2 cut(s)	267, 544
BstNSI	RCATGY	1 cut(s)	466
BstSLI	GKGCMC	1 cut(s)	272
BstV1I	GCAGC	1 cut(s)	17
BstV2I	GAAGAC	2 cut(s)	12, 279
Bsu36I	CCTNAGG	1 cut(s)	762
BsuI	GTATCC	1 cut(s)	343
BsuRI	GGCC	5 cut(s)	270, 635, 693, 728, 847
BtgI	CCRYGG	1 cut(s)	24
BtrI	CACGTC	1 cut(s)	871
BtsI	GCAGTG	1 cut(s)	268
BtsIMutI	CAGTG	2 cut(s)	268, 904
Cac8I	GCNNGC	2 cut(s)	94, 925
Cfr13I	GGNCC	3 cut(s)	268, 269, 691
CseI	GACGC	1 cut(s)	989
Csp6I	GTAC	5 cut(s)	294, 379, 410, 799, 865
CspCI	CAANNNNNGTGG	2 cut(s)	13, 48
CviAII	CATG	3 cut(s)	463, 553, 695
CviQI	GTAC	5 cut(s)	294, 379, 410, 799, 865
DdeI	CTNAG	6 cut(s)	88, 111, 241, 519, 600, 762
DpnI	GATC	1 cut(s)	614
DpnII	GATC	1 cut(s)	612
Eam1104I	CTCTTC	3 cut(s)	58, 186, 484
EarI	CTCTTC	3 cut(s)	58, 186, 484
Ecl136II	GAGCTC	1 cut(s)	830
Eco24I	GRGCYC	2 cut(s)	272, 832
Eco31I	GGTCTC	1 cut(s)	954
Eco53kI	GAGCTC	1 cut(s)	830
Eco81I	CCTNAGG	1 cut(s)	762
EcoICRI	GAGCTC	1 cut(s)	830
EcoO109I	RGGNCCY	1 cut(s)	268
EcoRI	GAATTC	1 cut(s)	162
EcoT22I	ATGCAT	1 cut(s)	700
EcoT38I	GRGCYC	2 cut(s)	272, 832
Esp3I	CGTCTC	1 cut(s)	66
FaeI	CATG	3 cut(s)	466, 556, 698
FalI	AAGNNNNNCTT	4 cut(s)	271, 303, 418, 450
FatI	CATG	3 cut(s)	462, 552, 694
Fnu4HI	GCNGC	2 cut(s)	6, 9
FriOI	GRGCYC	2 cut(s)	272, 832
Fsp4HI	GCNGC	2 cut(s)	6, 9
FspBI	CTAG	1 cut(s)	786
GluI	GCNGC	2 cut(s)	6, 9
GsaI	CCCAGC	1 cut(s)	310
HaeIII	GGCC	5 cut(s)	270, 635, 693, 728, 847
HgaI	GACGC	1 cut(s)	989
Hin1I	GRCGYC	1 cut(s)	981
Hin1II	CATG	3 cut(s)	466, 556, 698
HinfI	GANTC	3 cut(s)	115, 212, 931
HphI	GGTGA	1 cut(s)	803
Hpy166II	GTNNAC	1 cut(s)	323
Hpy188I	TCNGA	6 cut(s)	114, 244, 277, 504, 679, 879
Hpy188III	TCNNGA	5 cut(s)	82, 159, 761, 825, 840
Hpy8I	GTNNAC	1 cut(s)	323
Hpy99I	CGWCG	1 cut(s)	872
HpyAV	CCTTC	3 cut(s)	837, 913, 1007
HpyCH4III	ACNGT	5 cut(s)	28, 355, 383, 908, 1010
HpyCH4IV	ACGT	2 cut(s)	101, 870
HpyF10VI	GCNNNNNNNGC	2 cut(s)	267, 544
HpyF3I	CTNAG	6 cut(s)	88, 111, 241, 519, 600, 762
HpySE526I	ACGT	2 cut(s)	101, 870
Hsp92I	GRCGYC	1 cut(s)	981
Hsp92II	CATG	3 cut(s)	466, 556, 698
Kzo9I	GATC	1 cut(s)	612
LguI	GCTCTTC	2 cut(s)	58, 484
LmnI	GCTCC	2 cut(s)	101, 835
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	2 cut(s)	525, 999
MaeI	CTAG	1 cut(s)	786
MaeII	ACGT	2 cut(s)	101, 870
MaeIII	GTNAC	3 cut(s)	383, 791, 1042
MalI	GATC	1 cut(s)	614
MboI	GATC	1 cut(s)	612
MhlI	GDGCHC	2 cut(s)	272, 832
MluCI	AATT	7 cut(s)	153, 162, 560, 812, 835, 859, 1060
MlyI	GAGTC	1 cut(s)	925
Mph1103I	ATGCAT	1 cut(s)	700
MseI	TTAA	1 cut(s)	315
MslI	CAYNNNNRTG	2 cut(s)	465, 960
MspA1I	CMGCKG	1 cut(s)	8
MwoI	GCNNNNNNNGC	2 cut(s)	267, 544
NdeII	GATC	1 cut(s)	612
NlaIII	CATG	3 cut(s)	466, 556, 698
NlaIV	GGNNCC	4 cut(s)	269, 270, 432, 941
NmuCI	GTSAC	3 cut(s)	383, 791, 1042
NsiI	ATGCAT	1 cut(s)	700
NspI	RCATGY	1 cut(s)	466
PciI	ACATGT	1 cut(s)	462
PciSI	GCTCTTC	2 cut(s)	58, 484
PfeI	GAWTC	2 cut(s)	115, 212
PflFI	GACNNNGTC	1 cut(s)	16
PkrI	GCNGC	2 cut(s)	7, 10
PleI	GAGTC	1 cut(s)	925
PpsI	GAGTC	1 cut(s)	925
PscI	ACATGT	1 cut(s)	462
Psp124BI	GAGCTC	1 cut(s)	832
PspFI	CCCAGC	1 cut(s)	306
PspN4I	GGNNCC	4 cut(s)	269, 270, 432, 941
PspOMI	GGGCCC	1 cut(s)	268
PspPI	GGNCC	3 cut(s)	268, 269, 691
PsyI	GACNNNGTC	1 cut(s)	16
RsaI	GTAC	5 cut(s)	295, 380, 411, 800, 866
RsaNI	GTAC	5 cut(s)	294, 379, 410, 799, 865
RseI	CAYNNNNRTG	2 cut(s)	465, 960
SacI	GAGCTC	1 cut(s)	832
SapI	GCTCTTC	2 cut(s)	58, 484
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	2 cut(s)	6, 9
Sau3AI	GATC	1 cut(s)	612
Sau96I	GGNCC	3 cut(s)	268, 269, 691
ScaI	AGTACT	1 cut(s)	295
SchI	GAGTC	1 cut(s)	925
SduI	GDGCHC	2 cut(s)	272, 832
SfaNI	GCATC	2 cut(s)	525, 999
SmiMI	CAYNNNNRTG	2 cut(s)	465, 960
Sse9I	AATT	7 cut(s)	153, 162, 560, 812, 835, 859, 1060
SsiI	CCGC	3 cut(s)	8, 589, 789
SspMI	CTAG	1 cut(s)	786
SstI	GAGCTC	1 cut(s)	832
TaaI	ACNGT	5 cut(s)	28, 355, 383, 908, 1010
TaiI	ACGT	2 cut(s)	104, 873
TaqI	TCGA	1 cut(s)	841
TaqII	GACCGA	1 cut(s)	402
TasI	AATT	7 cut(s)	153, 162, 560, 812, 835, 859, 1060
TatI	WGTACW	3 cut(s)	293, 409, 798
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	2 cut(s)	115, 212
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	2 cut(s)	268, 911
TseFI	GTSAC	3 cut(s)	383, 791, 1042
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	3 cut(s)	383, 791, 1042
TspDTI	ATGAA	4 cut(s)	204, 261, 825, 932
TspGWI	ACGGA	2 cut(s)	362, 1030
TspRI	CASTG	2 cut(s)	268, 911
Tth111I	GACNNNGTC	1 cut(s)	16
XapI	RAATTY	3 cut(s)	162, 812, 859
XceI	RCATGY	1 cut(s)	466
XspI	CTAG	1 cut(s)	786
ZrmI	AGTACT	1 cut(s)	295
Zsp2I	ATGCAT	1 cut(s)	700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.