Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0014010

Physical Location & Seq

Genomic Coordinates Reverse (-)

47081832 .. 47084747

Gene Structure 2916 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1354300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGCTGCGGCGACTCTGTCTTCGACGGTGTTTGCAATCTCCGCCTCTTGCTCTTCTTCTTCTTCGTCTCTCAGAGCAAGGAGGAGCTTCAAGACTTCAGCTTTTTCATCTCGGAATCGTTTTCCATACAATCCCATTTCATCTCGTCCGTCGATTTCCAGAGTTCGAGCAACTATGCTGCACGAAGATGAAGAGAAGGTGGAAGTGGAGGAATCCTTTGAGTTCAAGGCTTCTACCTTTGATGAATTGAAAGCTAGCAGCGGGAATCTCTCTGAGAGTTCGTCTTCAAGTGCTTTTGAGATCTGGGTTATCAAGTGTGAACAATCCTTCAACATCTTCCTTACGGATACAGTTATAAAGGTACTTGAAACTCTGTACAGCGACCGGGATTATGCAAGGTTCTTTGTACTGGAAACTATTGCAAGGGTTCCTTACTTCGCCTTTATGTCTGTTCTGCACATGTATGAGAGTTTTGGTTGGTGGAGAAGGGCAGATTATCTGAAGGAATTGGGGGGAAATGCTTGGTGGTTTGACCGCTTTCTTGCTCAGCACATTGCAGTCTTCTATTATTTTATGACGGCCTTTATGTATTTAATAAGCCCAAGGATGGCATATCACTTCTCTGAATGTGTAGAGAGCCATGCATATTCAACCTACGACAAGTTTATCAAGGCCCGAGGAGAGGATTTGAAAAAGATGCCTGCTCCTGAGGTTGCTGTGAAATACTATACTAGTGGTGACATGTACTTATTTGGTAAGTTTTGTAACTTGTATGACACATTTCTGAACATAAGAGACGATGAAGCTGAACACTGTAAGACGATGAAGGCCTGCCAGACTCATGGGAACCTCTCGTCTCCTCACGCACGCACAGAAGACTCCTTAGAAGATGACTCTACCTGCGTTATTCCTCAAACAGATTGTGAAGGTATTGTAGATTGCATAAAGAAATCCATCGCGACAACGCCAGCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006629 GO:0006720 GO:0006721 GO:0006996 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009579 GO:0009657 GO:0009916 GO:0009987 GO:0016043 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016491 GO:0016679 GO:0016682 GO:0042440 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044464 GO:0046148 GO:0055114 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AOX

Protein Analysis

326

Amino Acids

37.18

Weight (kDa)

5.81

Isoelectric Point (pI)

56.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AOX	PF01786	173 - 279	2.2e-23	Alternative oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22260
fragaria_vesca	FvH4_3g01250 FvH4_3g01250 FvH4_3g01250
malus_domestica	MD05G1354300.v1.1 MD10G1328600.v1.1
prunus_persica	Prupe.4G013400_v2.0.a1
pyrus_communis	pycom10g27840
rosa_chinensis	RchiOBHm_Chr5g0001781
rosa_laevigata	RLG00000030972
rosa_multiflora	Rmu_ssc0000237.1_g000013
rosa_roxburghii	Rroxscaffold_1G00071240 Rroxscaffold_1G00074550
rosa_rugosa	Rorug04G0393000
rosa_samantha	Rh5BG017700 Rh5DG015800
rosa_wichuraiana	Rw5G001380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	356
Acc36I	ACCTGC	1 cut(s)	908
AccII	CGCG	1 cut(s)	959
AciI	CCGC	4 cut(s)	8, 42, 261, 535
AcuI	CTGAAG	2 cut(s)	81, 521
AfaI	GTAC	4 cut(s)	363, 377, 408, 746
AfiI	CCNNNNNNNGG	2 cut(s)	607, 682
AflIII	ACRYGT	2 cut(s)	459, 741
AgsI	TTSAA	8 cut(s)	91, 226, 250, 288, 331, 368, 651, 691
AhlI	ACTAGT	1 cut(s)	731
AluBI	AGCT	4 cut(s)	87, 101, 254, 806
AluI	AGCT	4 cut(s)	87, 101, 254, 806
Alw26I	GTCTC	3 cut(s)	72, 789, 861
Ama87I	CYCGRG	1 cut(s)	675
AoxI	GGCC	3 cut(s)	579, 672, 828
ApeKI	GCWGC	3 cut(s)	5, 178, 258
ArsI	GACNNNNNNTTYG	1 cut(s)	36
AspS9I	GGNCC	1 cut(s)	673
AsuC2I	CCSGG	1 cut(s)	386
AsuHPI	GGTGA	1 cut(s)	749
AsuNHI	GCTAGC	1 cut(s)	254
AvaI	CYCGRG	1 cut(s)	675
AxyI	CCTNAGG	1 cut(s)	708
BbsI	GAAGAC	4 cut(s)	12, 276, 553, 882
BbvI	GCAGC	2 cut(s)	165, 270
BccI	CCATC	2 cut(s)	601, 962
BceAI	ACGGC	1 cut(s)	594
BciVI	GTATCC	1 cut(s)	340
BcnI	CCSGG	1 cut(s)	386
BcoDI	GTCTC	3 cut(s)	72, 789, 861
BcuI	ACTAGT	1 cut(s)	731
BfaI	CTAG	2 cut(s)	255, 732
BfuAI	ACCTGC	1 cut(s)	908
BfuI	GTATCC	1 cut(s)	340
BglII	AGATCT	1 cut(s)	300
BisI	GCNGC	4 cut(s)	6, 9, 179, 259
BlpI	GCTNAGC	1 cut(s)	546
BlsI	GCNGC	4 cut(s)	7, 10, 180, 260
Bme1390I	CCNGG	1 cut(s)	386
BmeT110I	CYCGRG	1 cut(s)	675
BmgT120I	GGNCC	1 cut(s)	673
BmiI	GGNNCC	2 cut(s)	429, 848
BmrFI	CCNGG	1 cut(s)	386
BmsI	GCATC	1 cut(s)	687
BmtI	GCTAGC	1 cut(s)	258
BpiI	GAAGAC	4 cut(s)	12, 276, 553, 882
Bpu1102I	GCTNAGC	1 cut(s)	546
BpuMI	CCSGG	1 cut(s)	386
BsaJI	CCNNGG	2 cut(s)	602, 676
Bsc4I	CCNNNNNNNGG	2 cut(s)	607, 682
Bse1I	ACTGG	1 cut(s)	414
Bse21I	CCTNAGG	1 cut(s)	708
Bse3DI	GCAATG	1 cut(s)	552
BseDI	CCNNGG	2 cut(s)	602, 676
BseGI	GGATG	1 cut(s)	612
BseLI	CCNNNNNNNGG	2 cut(s)	607, 682
BseMI	GCAATG	1 cut(s)	552
BseMII	CTCAG	4 cut(s)	85, 264, 560, 699
BseNI	ACTGG	1 cut(s)	414
BseRI	GAGGAG	3 cut(s)	97, 693, 849
BseXI	GCAGC	2 cut(s)	165, 270
BsgI	GTGCAG	2 cut(s)	164, 440
Bsh1236I	CGCG	1 cut(s)	959
Bsh1285I	CGRYCG	1 cut(s)	385
BshFI	GGCC	3 cut(s)	581, 674, 830
BsiEI	CGRYCG	1 cut(s)	385
BsiHKCI	CYCGRG	1 cut(s)	675
BsiSI	CCGG	1 cut(s)	385
BslI	CCNNNNNNNGG	2 cut(s)	607, 682
BsmAI	GTCTC	3 cut(s)	72, 789, 861
BsmBI	CGTCTC	3 cut(s)	72, 789, 861
BsnI	GGCC	3 cut(s)	581, 674, 830
BsoBI	CYCGRG	1 cut(s)	675
Bsp1407I	TGTACA	1 cut(s)	375
Bsp143I	GATC	1 cut(s)	300
Bsp1720I	GCTNAGC	1 cut(s)	546
Bsp68I	TCGCGA	1 cut(s)	959
BspACI	CCGC	4 cut(s)	8, 42, 261, 535
BspANI	GGCC	3 cut(s)	581, 674, 830
BspCNI	CTCAG	4 cut(s)	84, 265, 559, 700
BspFNI	CGCG	1 cut(s)	959
BspLI	GGNNCC	2 cut(s)	429, 848
BspMI	ACCTGC	1 cut(s)	908
BspOI	GCTAGC	1 cut(s)	258
BspQI	GCTCTTC	1 cut(s)	58
BsrDI	GCAATG	1 cut(s)	552
BsrGI	TGTACA	1 cut(s)	375
BsrI	ACTGG	1 cut(s)	414
BssECI	CCNNGG	2 cut(s)	602, 676
BssMI	GATC	1 cut(s)	300
BssT1I	CCWWGG	1 cut(s)	602
Bst4CI	ACNGT	3 cut(s)	28, 352, 815
Bst6I	CTCTTC	2 cut(s)	58, 186
BstAUI	TGTACA	1 cut(s)	375
BstC8I	GCNNGC	5 cut(s)	256, 702, 832, 868, 969
BstDEI	CTNAG	5 cut(s)	71, 273, 546, 708, 883
BstF5I	GGATG	1 cut(s)	612
BstFNI	CGCG	1 cut(s)	959
BstKTI	GATC	1 cut(s)	303
BstMAI	GTCTC	3 cut(s)	72, 789, 861
BstMBI	GATC	1 cut(s)	300
BstMCI	CGRYCG	1 cut(s)	385
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstNSI	RCATGY	2 cut(s)	463, 745
BstSCI	CCNGG	1 cut(s)	384
BstUI	CGCG	1 cut(s)	959
BstV1I	GCAGC	2 cut(s)	165, 270
BstV2I	GAAGAC	4 cut(s)	12, 276, 553, 882
BstX2I	RGATCY	1 cut(s)	300
BstXI	CCANNNNNNTGG	1 cut(s)	842
BstYI	RGATCY	1 cut(s)	300
Bsu36I	CCTNAGG	1 cut(s)	708
BsuI	GTATCC	1 cut(s)	340
BsuRI	GGCC	3 cut(s)	581, 674, 830
BtgZI	GCGATG	1 cut(s)	940
BtsCI	GGATG	1 cut(s)	612
BtsIMutI	CAGTG	1 cut(s)	811
BtuMI	TCGCGA	1 cut(s)	959
BveI	ACCTGC	1 cut(s)	908
Cac8I	GCNNGC	5 cut(s)	256, 702, 832, 868, 969
Cfr13I	GGNCC	1 cut(s)	673
Csp6I	GTAC	4 cut(s)	362, 376, 407, 745
CviAII	CATG	4 cut(s)	460, 641, 742, 842
CviQI	GTAC	4 cut(s)	362, 376, 407, 745
DdeI	CTNAG	5 cut(s)	71, 273, 546, 708, 883
DpnI	GATC	1 cut(s)	302
DpnII	GATC	1 cut(s)	300
Eam1104I	CTCTTC	2 cut(s)	58, 186
EarI	CTCTTC	2 cut(s)	58, 186
EciI	GGCGGA	1 cut(s)	31
Eco130I	CCWWGG	1 cut(s)	602
Eco147I	AGGCCT	1 cut(s)	830
Eco57I	CTGAAG	2 cut(s)	81, 521
Eco81I	CCTNAGG	1 cut(s)	708
Eco88I	CYCGRG	1 cut(s)	675
EcoT14I	CCWWGG	1 cut(s)	602
EcoT22I	ATGCAT	1 cut(s)	646
ErhI	CCWWGG	1 cut(s)	602
Esp3I	CGTCTC	3 cut(s)	72, 789, 861
FaeI	CATG	4 cut(s)	463, 644, 745, 845
FalI	AAGNNNNNCTT	2 cut(s)	415, 447
FatI	CATG	4 cut(s)	459, 640, 741, 841
FauI	CCCGC	1 cut(s)	254
Fnu4HI	GCNGC	4 cut(s)	6, 9, 179, 259
FokI	GGATG	1 cut(s)	619
Fsp4HI	GCNGC	4 cut(s)	6, 9, 179, 259
FspBI	CTAG	2 cut(s)	255, 732
GluI	GCNGC	4 cut(s)	6, 9, 179, 259
HaeIII	GGCC	3 cut(s)	581, 674, 830
HapII	CCGG	1 cut(s)	385
Hin1II	CATG	4 cut(s)	463, 644, 745, 845
HinfI	GANTC	7 cut(s)	13, 115, 212, 265, 838, 878, 893
HpaII	CCGG	1 cut(s)	385
HphI	GGTGA	1 cut(s)	749
Hpy166II	GTNNAC	1 cut(s)	320
Hpy188I	TCNGA	6 cut(s)	74, 114, 274, 501, 625, 786
Hpy188III	TCNNGA	4 cut(s)	91, 159, 707, 958
Hpy8I	GTNNAC	1 cut(s)	320
Hpy99I	CGWCG	2 cut(s)	28, 154
HpyAV	CCTTC	6 cut(s)	190, 337, 480, 496, 820, 920
HpyCH4III	ACNGT	3 cut(s)	28, 352, 815
HpyCH4V	TGCA	8 cut(s)	35, 181, 395, 422, 457, 557, 644, 942
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	5 cut(s)	71, 273, 546, 708, 883
Hsp92II	CATG	4 cut(s)	463, 644, 745, 845
Kzo9I	GATC	1 cut(s)	300
LguI	GCTCTTC	1 cut(s)	58
LmnI	GCTCC	2 cut(s)	84, 709
LpnPI	CCDG	9 cut(s)	172, 289, 395, 398, 714, 720, 844, 848, 913
Lsp1109I	GCAGC	2 cut(s)	165, 270
LweI	GCATC	1 cut(s)	687
MaeI	CTAG	2 cut(s)	255, 732
MaeIII	GTNAC	2 cut(s)	737, 764
MalI	GATC	1 cut(s)	302
MboI	GATC	1 cut(s)	300
MflI	RGATCY	1 cut(s)	300
MluCI	AATT	2 cut(s)	245, 506
MlyI	GAGTC	4 cut(s)	7, 832, 872, 887
MnlI	CCTC	9 cut(s)	55, 75, 202, 671, 676, 703, 860, 870, 921
Mph1103I	ATGCAT	1 cut(s)	646
MseI	TTAA	1 cut(s)	593
MslI	CAYNNNNRTG	2 cut(s)	186, 462
MspA1I	CMGCKG	1 cut(s)	261
MspI	CCGG	1 cut(s)	385
MspR9I	CCNGG	1 cut(s)	386
MvnI	CGCG	1 cut(s)	959
MwoI	GCNNNNNNNGC	1 cut(s)	41
NciI	CCSGG	1 cut(s)	386
NdeII	GATC	1 cut(s)	300
NheI	GCTAGC	1 cut(s)	254
NlaIII	CATG	4 cut(s)	463, 644, 745, 845
NlaIV	GGNNCC	2 cut(s)	429, 848
NmuCI	GTSAC	1 cut(s)	737
NruI	TCGCGA	1 cut(s)	959
NsiI	ATGCAT	1 cut(s)	646
NspI	RCATGY	2 cut(s)	463, 745
PceI	AGGCCT	1 cut(s)	830
PciI	ACATGT	2 cut(s)	459, 741
PciSI	GCTCTTC	1 cut(s)	58
PfeI	GAWTC	3 cut(s)	115, 212, 265
PflFI	GACNNNGTC	1 cut(s)	16
PkrI	GCNGC	4 cut(s)	7, 10, 180, 260
PleI	GAGTC	4 cut(s)	7, 832, 872, 887
PpsI	GAGTC	4 cut(s)	7, 832, 872, 887
PscI	ACATGT	2 cut(s)	459, 741
PsiI	TTATAA	1 cut(s)	356
PspN4I	GGNNCC	2 cut(s)	429, 848
PspPI	GGNCC	1 cut(s)	673
PsuI	RGATCY	1 cut(s)	300
PsyI	GACNNNGTC	1 cut(s)	16
RruI	TCGCGA	1 cut(s)	959
RsaI	GTAC	4 cut(s)	363, 377, 408, 746
RsaNI	GTAC	4 cut(s)	362, 376, 407, 745
RseI	CAYNNNNRTG	2 cut(s)	186, 462
SapI	GCTCTTC	1 cut(s)	58
SaqAI	TTAA	1 cut(s)	593
SatI	GCNGC	4 cut(s)	6, 9, 179, 259
Sau3AI	GATC	1 cut(s)	300
Sau96I	GGNCC	1 cut(s)	673
SchI	GAGTC	4 cut(s)	7, 832, 872, 887
ScrFI	CCNGG	1 cut(s)	386
SfaNI	GCATC	1 cut(s)	687
SmiMI	CAYNNNNRTG	2 cut(s)	186, 462
SpeI	ACTAGT	1 cut(s)	731
Sse9I	AATT	2 cut(s)	245, 506
SseBI	AGGCCT	1 cut(s)	830
SsiI	CCGC	4 cut(s)	8, 42, 261, 535
SspMI	CTAG	2 cut(s)	255, 732
StuI	AGGCCT	1 cut(s)	830
StyD4I	CCNGG	1 cut(s)	384
StyI	CCWWGG	1 cut(s)	602
TaaI	ACNGT	3 cut(s)	28, 352, 815
TaqI	TCGA	3 cut(s)	23, 152, 166
TasI	AATT	2 cut(s)	245, 506
TatI	WGTACW	3 cut(s)	375, 406, 744
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	3 cut(s)	115, 212, 265
Tru1I	TTAA	1 cut(s)	593
Tru9I	TTAA	1 cut(s)	593
TscAI	CASTG	1 cut(s)	818
TseFI	GTSAC	1 cut(s)	737
TseI	GCWGC	3 cut(s)	5, 178, 258
Tsp45I	GTSAC	1 cut(s)	737
TspDTI	ATGAA	6 cut(s)	96, 129, 204, 258, 816, 839
TspGWI	ACGGA	2 cut(s)	138, 359
TspRI	CASTG	1 cut(s)	818
Tth111I	GACNNNGTC	1 cut(s)	16
XceI	RCATGY	2 cut(s)	463, 745
XspI	CTAG	2 cut(s)	255, 732
Zsp2I	ATGCAT	1 cut(s)	646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.