RLG00000030972

Belongs to the alternative oxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0014010
Physical Location & Seq
Forward (+)
978023 .. 981479
3457 bp
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UTR
Exon/CDS
Intron
RLM00000030972

Sequence Viewer

Length: 1011 bp
ATGGCACATATGGCCACCCCCGAATTTATGCTCAACGTTATCCGCCCACTCTTCCAAGGCTCACAAGAAGACGAACAATACCCACTAACAAAGGATTTGTATAGGGTACATGCAACTATTCTCCAAGACGAAGAAGAGAAAGTGGTGCTGGAGGAGTCTTTTGAGTTCAAGGCAGCTACCTCTGATGAAGTGAAGGCCAGCAGTGGGGAGGCCTCCGAGAGTGAGCCTTCTAGTGATTTTGAGAAATGGGTTATCAAGGGTGAACAATCCATCAACGTTTTCCTTACGGATACAGTGATTAAGGTACTTGATACTCTTTACCACGACCGTGATTATGCGAGGTTCTTTGTACTGGAAACTATTGCAAGGGTTCCCTACTTCGCCTTTATGTCTGTTCTACACTTGTATGAGACTTTTGGCTGGTGGAGAAGAAGAGATTATTTGAAAGTGCATTTTGCTGAGAGCTGGAATGAGATGCACCACTTGCTTATCATGGAAGAATTGGGAGGAAATGCTTGGTGGTTTGATCGCTTTCTTGCTCAGCACATTGCGGTCTTCTATTACTTTATGATAGTTTTTATGTATATAATAAGCCCACGAATGGCATATCACTTCTCAGAATGTGTAGAGGGCCATGCATTTTCAACATATGACAAGTTTATCAAGGCTGAAGGAGAGAATCTGAAAAAATTGCCTGCTCCTGAGGTTGCTGTAAAATACTACACTGGAGGTGACTTGTACTTGTTTGATGAATTTCAAACTTCCAGACCTCCCAATTCTCGAAGGCCGAAAATAGAGAATTTGTTCGATGTATTTCTGAACATAAGAGATGATGAAGCTGAGCACTGTAAGACGATGAAGGCCTGCCAAACTCACGGGAACCTCTTTTCTCCTCATTCAATTGTAGAAGACCCCTTGGAAGATGAGTCTATCAGTGTCGCTCCTCAAACGGATTGTGAAGGTATTGTAGATTGTATTACAAAACCCGTTGCAACGAAACCAGCAGAGTGA

Protein Analysis

337

Amino Acids

39.12

Weight (kDa)

4.91

Isoelectric Point (pI)

50.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AOX PF01786 94 - 290 4e-42 Alternative oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014010)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G22260
fragaria_vesca FvH4_3g01250 FvH4_3g01250 FvH4_3g01250
malus_domestica MD05G1354300.v1.1 MD10G1328600.v1.1
prunus_persica Prupe.4G013400_v2.0.a1
pyrus_communis pycom10g27840
rosa_chinensis RchiOBHm_Chr5g0001781
rosa_laevigata RLG00000030972
rosa_multiflora Rmu_ssc0000237.1_g000013
rosa_roxburghii Rroxscaffold_1G00071240 Rroxscaffold_1G00074550
rosa_rugosa Rorug04G0393000
rosa_samantha Rh5BG017700 Rh5DG015800
rosa_wichuraiana Rw5G001380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 43, 551
AclI AACGTT 2 cut(s) 36, 276
AcoI YGGCCR 1 cut(s) 12
AcsI RAATTY 3 cut(s) 23, 752, 799
AcuI CTGAAG 1 cut(s) 690
AfaI GTAC 4 cut(s) 108, 306, 351, 740
AfiI CCNNNNNNNGG 2 cut(s) 204, 601
AgsI TTSAA 5 cut(s) 169, 445, 645, 758, 900
AleI CACNNNNGTG 1 cut(s) 327
AluBI AGCT 3 cut(s) 176, 465, 839
AluI AGCT 3 cut(s) 176, 465, 839
Alw21I GWGCWC 1 cut(s) 846
Alw26I GTCTC 1 cut(s) 404
AoxI GGCC 6 cut(s) 12, 195, 210, 631, 785, 861
ApeKI GCWGC 1 cut(s) 173
ApoI RAATTY 3 cut(s) 23, 752, 799
Asp700I GAANNNNTTC 1 cut(s) 803
AspS9I GGNCC 1 cut(s) 631
AsuHPI GGTGA 2 cut(s) 272, 743
AxyI CCTNAGG 1 cut(s) 702
BalI TGGCCA 1 cut(s) 14
BbsI GAAGAC 3 cut(s) 75, 547, 915
Bbv12I GWGCWC 1 cut(s) 846
BbvI GCAGC 1 cut(s) 185
BccI CCATC 1 cut(s) 278
BciVI GTATCC 1 cut(s) 283
BcoDI GTCTC 1 cut(s) 404
BfaI CTAG 1 cut(s) 231
BfuI GTATCC 1 cut(s) 283
BisI GCNGC 1 cut(s) 174
BlpI GCTNAGC 2 cut(s) 540, 840
BlsI GCNGC 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 631
BmiI GGNNCC 2 cut(s) 372, 881
BmsI GCATC 1 cut(s) 465
BpiI GAAGAC 3 cut(s) 75, 547, 915
BpmI CTGGAG 2 cut(s) 170, 747
Bpu1102I GCTNAGC 2 cut(s) 540, 840
BsaJI CCNNGG 2 cut(s) 55, 915
Bsc4I CCNNNNNNNGG 2 cut(s) 204, 601
Bse1I ACTGG 2 cut(s) 357, 730
Bse21I CCTNAGG 1 cut(s) 702
Bse3DI GCAATG 1 cut(s) 546
BseDI CCNNGG 2 cut(s) 55, 915
BseLI CCNNNNNNNGG 2 cut(s) 204, 601
BseMI GCAATG 1 cut(s) 546
BseMII CTCAG 5 cut(s) 450, 554, 630, 693, 831
BseNI ACTGG 2 cut(s) 357, 730
BseRI GAGGAG 3 cut(s) 167, 882, 933
BseXI GCAGC 1 cut(s) 185
Bsh1285I CGRYCG 1 cut(s) 328
BshFI GGCC 6 cut(s) 14, 197, 212, 633, 787, 863
BsiEI CGRYCG 1 cut(s) 328
BsiHKAI GWGCWC 1 cut(s) 846
BslI CCNNNNNNNGG 2 cut(s) 204, 601
BsmAI GTCTC 1 cut(s) 404
BsnI GGCC 6 cut(s) 14, 197, 212, 633, 787, 863
Bsp1286I GDGCHC 1 cut(s) 846
Bsp143I GATC 1 cut(s) 526
Bsp1720I GCTNAGC 2 cut(s) 540, 840
BspACI CCGC 2 cut(s) 43, 551
BspANI GGCC 6 cut(s) 14, 197, 212, 633, 787, 863
BspCNI CTCAG 5 cut(s) 451, 553, 629, 694, 832
BspLI GGNNCC 2 cut(s) 372, 881
BsrDI GCAATG 1 cut(s) 546
BsrI ACTGG 2 cut(s) 357, 730
BssECI CCNNGG 2 cut(s) 55, 915
BssMI GATC 1 cut(s) 526
BssT1I CCWWGG 2 cut(s) 55, 915
Bst4CI ACNGT 3 cut(s) 295, 329, 848
Bst6I CTCTTC 3 cut(s) 56, 129, 427
BstAPI GCANNNNNTGC 1 cut(s) 484
BstC8I GCNNGC 3 cut(s) 199, 696, 865
BstDEI CTNAG 5 cut(s) 459, 540, 616, 702, 840
BstKTI GATC 1 cut(s) 529
BstMAI GTCTC 1 cut(s) 404
BstMBI GATC 1 cut(s) 526
BstMCI CGRYCG 1 cut(s) 328
BstMWI GCNNNNNNNGC 2 cut(s) 11, 484
BstNSI RCATGY 1 cut(s) 113
BstV1I GCAGC 1 cut(s) 185
BstV2I GAAGAC 3 cut(s) 75, 547, 915
Bsu36I CCTNAGG 1 cut(s) 702
BsuI GTATCC 1 cut(s) 283
BsuRI GGCC 6 cut(s) 14, 197, 212, 633, 787, 863
BtsI GCAGTG 1 cut(s) 208
BtsIMutI CAGTG 5 cut(s) 208, 300, 723, 844, 940
Cac8I GCNNGC 3 cut(s) 199, 696, 865
Cfr13I GGNCC 1 cut(s) 631
Csp6I GTAC 4 cut(s) 107, 305, 350, 739
CviAII CATG 3 cut(s) 110, 493, 635
CviQI GTAC 4 cut(s) 107, 305, 350, 739
DdeI CTNAG 5 cut(s) 459, 540, 616, 702, 840
DpnI GATC 1 cut(s) 528
DpnII GATC 1 cut(s) 526
EaeI YGGCCR 1 cut(s) 12
Eam1104I CTCTTC 3 cut(s) 56, 129, 427
EarI CTCTTC 3 cut(s) 56, 129, 427
EciI GGCGGA 1 cut(s) 32
Eco130I CCWWGG 2 cut(s) 55, 915
Eco147I AGGCCT 2 cut(s) 212, 863
Eco57I CTGAAG 1 cut(s) 690
Eco81I CCTNAGG 1 cut(s) 702
EcoT14I CCWWGG 2 cut(s) 55, 915
EcoT22I ATGCAT 1 cut(s) 640
ErhI CCWWGG 2 cut(s) 55, 915
FaeI CATG 3 cut(s) 113, 496, 638
FatI CATG 3 cut(s) 109, 492, 634
FauNDI CATATG 2 cut(s) 9, 649
Fnu4HI GCNGC 1 cut(s) 174
Fsp4HI GCNGC 1 cut(s) 174
FspBI CTAG 1 cut(s) 231
GluI GCNGC 1 cut(s) 174
GsuI CTGGAG 2 cut(s) 170, 747
HaeIII GGCC 6 cut(s) 14, 197, 212, 633, 787, 863
Hin1II CATG 3 cut(s) 113, 496, 638
HinfI GANTC 3 cut(s) 155, 679, 926
HphI GGTGA 2 cut(s) 272, 743
Hpy166II GTNNAC 1 cut(s) 263
Hpy188I TCNGA 5 cut(s) 184, 217, 619, 684, 819
Hpy188III TCNNGA 3 cut(s) 701, 765, 780
Hpy8I GTNNAC 1 cut(s) 263
HpyAV CCTTC 6 cut(s) 187, 237, 665, 777, 853, 953
HpyCH4III ACNGT 3 cut(s) 295, 329, 848
HpyCH4IV ACGT 2 cut(s) 36, 276
HpyCH4V TGCA 6 cut(s) 113, 365, 451, 478, 638, 992
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 484
HpyF3I CTNAG 5 cut(s) 459, 540, 616, 702, 840
HpySE526I ACGT 2 cut(s) 36, 276
Hsp92II CATG 3 cut(s) 113, 496, 638
Kzo9I GATC 1 cut(s) 526
LmnI GCTCC 2 cut(s) 703, 946
Lsp1109I GCAGC 1 cut(s) 185
LweI GCATC 1 cut(s) 465
MaeI CTAG 1 cut(s) 231
MaeII ACGT 2 cut(s) 36, 276
MaeIII GTNAC 1 cut(s) 731
MalI GATC 1 cut(s) 528
MboI GATC 1 cut(s) 526
MfeI CAATTG 1 cut(s) 900
MhlI GDGCHC 1 cut(s) 846
MlsI TGGCCA 1 cut(s) 14
MluCI AATT 7 cut(s) 23, 500, 689, 752, 775, 799, 900
MluNI TGGCCA 1 cut(s) 14
MlyI GAGTC 2 cut(s) 164, 935
Mox20I TGGCCA 1 cut(s) 14
Mph1103I ATGCAT 1 cut(s) 640
MroXI GAANNNNTTC 1 cut(s) 803
MscI TGGCCA 1 cut(s) 14
MseI TTAA 1 cut(s) 300
MslI CAYNNNNRTG 2 cut(s) 327, 405
Msp20I TGGCCA 1 cut(s) 14
MunI CAATTG 1 cut(s) 900
MwoI GCNNNNNNNGC 2 cut(s) 11, 484
NdeI CATATG 2 cut(s) 9, 649
NdeII GATC 1 cut(s) 526
NlaIII CATG 3 cut(s) 113, 496, 638
NlaIV GGNNCC 2 cut(s) 372, 881
NmuCI GTSAC 1 cut(s) 731
NsiI ATGCAT 1 cut(s) 640
NspI RCATGY 1 cut(s) 113
OliI CACNNNNGTG 1 cut(s) 327
PceI AGGCCT 2 cut(s) 212, 863
PdmI GAANNNNTTC 1 cut(s) 803
PfeI GAWTC 1 cut(s) 679
PkrI GCNGC 1 cut(s) 175
PleI GAGTC 2 cut(s) 163, 934
PpsI GAGTC 2 cut(s) 163, 934
Psp1406I AACGTT 2 cut(s) 36, 276
PspN4I GGNNCC 2 cut(s) 372, 881
PspPI GGNCC 1 cut(s) 631
RsaI GTAC 4 cut(s) 108, 306, 351, 740
RsaNI GTAC 4 cut(s) 107, 305, 350, 739
RseI CAYNNNNRTG 2 cut(s) 327, 405
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 1 cut(s) 174
Sau3AI GATC 1 cut(s) 526
Sau96I GGNCC 1 cut(s) 631
SchI GAGTC 2 cut(s) 164, 935
SduI GDGCHC 1 cut(s) 846
SfaNI GCATC 1 cut(s) 465
SmiMI CAYNNNNRTG 2 cut(s) 327, 405
Sse9I AATT 7 cut(s) 23, 500, 689, 752, 775, 799, 900
SseBI AGGCCT 2 cut(s) 212, 863
SsiI CCGC 2 cut(s) 43, 551
SspMI CTAG 1 cut(s) 231
StuI AGGCCT 2 cut(s) 212, 863
StyI CCWWGG 2 cut(s) 55, 915
TaaI ACNGT 3 cut(s) 295, 329, 848
TaiI ACGT 2 cut(s) 39, 279
TaqI TCGA 2 cut(s) 781, 807
TasI AATT 7 cut(s) 23, 500, 689, 752, 775, 799, 900
TatI WGTACW 2 cut(s) 349, 738
TfiI GAWTC 1 cut(s) 679
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TscAI CASTG 5 cut(s) 208, 300, 730, 851, 940
TseFI GTSAC 1 cut(s) 731
TseI GCWGC 1 cut(s) 173
Tsp45I GTSAC 1 cut(s) 731
TspDTI ATGAA 4 cut(s) 201, 765, 849, 872
TspGWI ACGGA 2 cut(s) 302, 965
TspRI CASTG 5 cut(s) 208, 300, 730, 851, 940
XapI RAATTY 3 cut(s) 23, 752, 799
XceI RCATGY 1 cut(s) 113
XmnI GAANNNNTTC 1 cut(s) 803
XspI CTAG 1 cut(s) 231
Zsp2I ATGCAT 1 cut(s) 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.