Rh5BG017700

Belongs to the alternative oxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0014010
Physical Location & Seq
Forward (+)
1288242 .. 1291451
3210 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG017700.1

Sequence Viewer

Length: 1092 bp
ATGGCAGCGGCGACTCTGTCTTCAACGGTGTTTGCAATCCCAACTTCCTGCTCTTCTTCTTCTTCTTCTTCGTCTCTCAAAGCAAGGACCTTGAAGACTTCAGCTTTTTCTTCTTCGTCCTCGCTCTGCTCTCTGAATCGTTTTCCTTGCAATCCCATCTCAGCTCGTCCATCGTGTTCCAGAAACTTGTATAGGGTACATGCAACTATTGTCCAAGATGAAGAAGAGAAAGTGGTGGTGGAGGAGTCCTTTGAGTTCAAGGCAACTACGTCTGATGAAGTGAAAGCCAGCAGTGGGGAGGCCTCTGAGAATGAGCCTTCTAGTGATTTTGAGAAATGGGTTATCAAGGGTGAACAATCCATCAACGTTTTCCTTACGGATACAGTGATTAAGGTACTTGATACTCTTTACCACGACCGTGATTATGCCAGGTTCTTTGTACTGGAAACTATTGCAAGGGTTCCCTACTTCGCCTTTATGTCTGTTCTACACTTGTATGAGACTTTTGGCTGGTGGAGAAGAAGAGATTATTTGAAAGTGCATTTTGCTGAGAGCTGGAATGAGATGCACCACTTGCTTATCATGGAAGAATTGGGAGGAAATGCTTGGTGGTTTGATCGCTTTCTTGCTCAGCACATTGCGGTCTTCTATTACTTTATGACAGTTTTTATGTATTTAATAAGCCCACGAATGGCATATCACTTCTCTGAATGTGTAGAGGGCCATGCATTTTCAACATATGACAAGTTTATCAAGGCTGAAGGAGAGAATCTGAAAAAATTGCCTGCTCCTGAGGTTGCTGTAAAATACTACACTGGAGGTGACTTGTACTTGTTTGATGAATTTCAAACTTCCAGACCTCCCAATTCTCGAAGGCCGAAAATAGAGAATTTGTTCGATGTATTTCTGAACATAAGAGATGATGAAGCTGAGCACTGTAAGACGATGAAGGCCTGCCAAACTCACGGGAACCTCTTTTCTCCTCATTCAATTGTAGAAGATCATGAGTCTATCTGTGTCGCTCCTCAAACAGATTGTGAAGGTATTGTAGATTGTATTACAAAACCCGTTGCAACGAAACCAGCAGAGTGA

Protein Analysis

363

Amino Acids

41.44

Weight (kDa)

5.5

Isoelectric Point (pI)

50.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AOX PF01786 124 - 320 3.8e-42 Alternative oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014010)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G22260
fragaria_vesca FvH4_3g01250 FvH4_3g01250 FvH4_3g01250
malus_domestica MD05G1354300.v1.1 MD10G1328600.v1.1
prunus_persica Prupe.4G013400_v2.0.a1
pyrus_communis pycom10g27840
rosa_chinensis RchiOBHm_Chr5g0001781
rosa_laevigata RLG00000030972
rosa_multiflora Rmu_ssc0000237.1_g000013
rosa_roxburghii Rroxscaffold_1G00071240 Rroxscaffold_1G00074550
rosa_rugosa Rorug04G0393000
rosa_samantha Rh5BG017700 Rh5DG015800
rosa_wichuraiana Rw5G001380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 8, 641
AclI AACGTT 1 cut(s) 366
AcsI RAATTY 2 cut(s) 842, 889
AcuI CTGAAG 2 cut(s) 84, 780
AfaI GTAC 4 cut(s) 198, 396, 441, 830
AfiI CCNNNNNNNGG 2 cut(s) 294, 691
AgsI TTSAA 7 cut(s) 24, 94, 259, 535, 735, 848, 990
AjnI CCWGG 1 cut(s) 428
AleI CACNNNNGTG 1 cut(s) 417
AluBI AGCT 4 cut(s) 104, 164, 555, 929
AluI AGCT 4 cut(s) 104, 164, 555, 929
Alw21I GWGCWC 1 cut(s) 936
Alw26I GTCTC 2 cut(s) 78, 494
AoxI GGCC 4 cut(s) 300, 721, 875, 951
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 2 cut(s) 842, 889
Asp700I GAANNNNTTC 1 cut(s) 893
AspS9I GGNCC 2 cut(s) 87, 721
AsuHPI GGTGA 2 cut(s) 362, 833
AvaII GGWCC 1 cut(s) 87
AxyI CCTNAGG 1 cut(s) 792
BbsI GAAGAC 3 cut(s) 12, 101, 637
Bbv12I GWGCWC 1 cut(s) 936
BbvI GCAGC 1 cut(s) 17
BccI CCATC 3 cut(s) 164, 178, 368
BciT130I CCWGG 1 cut(s) 430
BciVI GTATCC 1 cut(s) 373
BcoDI GTCTC 2 cut(s) 78, 494
BfaI CTAG 1 cut(s) 321
BfuI GTATCC 1 cut(s) 373
BisI GCNGC 2 cut(s) 6, 9
BlpI GCTNAGC 2 cut(s) 630, 930
BlsI GCNGC 2 cut(s) 7, 10
Bme1390I CCNGG 1 cut(s) 430
Bme18I GGWCC 1 cut(s) 87
BmgT120I GGNCC 2 cut(s) 87, 721
BmiI GGNNCC 2 cut(s) 462, 971
BmrFI CCNGG 1 cut(s) 430
BmsI GCATC 1 cut(s) 555
BpiI GAAGAC 3 cut(s) 12, 101, 637
BpmI CTGGAG 1 cut(s) 837
Bpu1102I GCTNAGC 2 cut(s) 630, 930
Bsc4I CCNNNNNNNGG 2 cut(s) 294, 691
Bse1I ACTGG 2 cut(s) 447, 820
Bse21I CCTNAGG 1 cut(s) 792
Bse3DI GCAATG 1 cut(s) 636
BseBI CCWGG 1 cut(s) 430
BseLI CCNNNNNNNGG 2 cut(s) 294, 691
BseMI GCAATG 1 cut(s) 636
BseMII CTCAG 6 cut(s) 174, 297, 540, 644, 783, 921
BseNI ACTGG 2 cut(s) 447, 820
BseRI GAGGAG 3 cut(s) 257, 972, 1014
BseXI GCAGC 1 cut(s) 17
Bsh1285I CGRYCG 1 cut(s) 418
BshFI GGCC 4 cut(s) 302, 723, 877, 953
BsiEI CGRYCG 1 cut(s) 418
BsiHKAI GWGCWC 1 cut(s) 936
BslI CCNNNNNNNGG 2 cut(s) 294, 691
BsmAI GTCTC 2 cut(s) 78, 494
BsmBI CGTCTC 1 cut(s) 78
BsnI GGCC 4 cut(s) 302, 723, 877, 953
Bsp1286I GDGCHC 1 cut(s) 936
Bsp143I GATC 2 cut(s) 616, 1000
Bsp1720I GCTNAGC 2 cut(s) 630, 930
BspACI CCGC 2 cut(s) 8, 641
BspANI GGCC 4 cut(s) 302, 723, 877, 953
BspCNI CTCAG 6 cut(s) 173, 298, 541, 643, 784, 922
BspHI TCATGA 1 cut(s) 1003
BspLI GGNNCC 2 cut(s) 462, 971
BspQI GCTCTTC 1 cut(s) 58
BsrDI GCAATG 1 cut(s) 636
BsrI ACTGG 2 cut(s) 447, 820
BssMI GATC 2 cut(s) 616, 1000
Bst2UI CCWGG 1 cut(s) 430
Bst4CI ACNGT 5 cut(s) 28, 385, 419, 664, 938
Bst6I CTCTTC 3 cut(s) 58, 219, 517
BstAPI GCANNNNNTGC 1 cut(s) 574
BstC8I GCNNGC 3 cut(s) 289, 786, 955
BstDEI CTNAG 6 cut(s) 160, 306, 549, 630, 792, 930
BstKTI GATC 2 cut(s) 619, 1003
BstMAI GTCTC 2 cut(s) 78, 494
BstMBI GATC 2 cut(s) 616, 1000
BstMCI CGRYCG 1 cut(s) 418
BstMWI GCNNNNNNNGC 1 cut(s) 574
BstNI CCWGG 1 cut(s) 430
BstNSI RCATGY 1 cut(s) 203
BstSCI CCNGG 1 cut(s) 428
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 3 cut(s) 12, 101, 637
Bsu36I CCTNAGG 1 cut(s) 792
BsuI GTATCC 1 cut(s) 373
BsuRI GGCC 4 cut(s) 302, 723, 877, 953
BtsI GCAGTG 1 cut(s) 298
BtsIMutI CAGTG 4 cut(s) 298, 390, 813, 934
Cac8I GCNNGC 3 cut(s) 289, 786, 955
CciI TCATGA 1 cut(s) 1003
Cfr13I GGNCC 2 cut(s) 87, 721
Csp6I GTAC 4 cut(s) 197, 395, 440, 829
CviAII CATG 4 cut(s) 200, 583, 725, 1004
CviQI GTAC 4 cut(s) 197, 395, 440, 829
DdeI CTNAG 6 cut(s) 160, 306, 549, 630, 792, 930
DpnI GATC 2 cut(s) 618, 1002
DpnII GATC 2 cut(s) 616, 1000
Eam1104I CTCTTC 3 cut(s) 58, 219, 517
EarI CTCTTC 3 cut(s) 58, 219, 517
Eco147I AGGCCT 2 cut(s) 302, 953
Eco47I GGWCC 1 cut(s) 87
Eco57I CTGAAG 2 cut(s) 84, 780
Eco81I CCTNAGG 1 cut(s) 792
EcoO109I RGGNCCY 1 cut(s) 87
EcoRII CCWGG 1 cut(s) 428
EcoT22I ATGCAT 1 cut(s) 730
Esp3I CGTCTC 1 cut(s) 78
FaeI CATG 4 cut(s) 203, 586, 728, 1007
FatI CATG 4 cut(s) 199, 582, 724, 1003
FauNDI CATATG 1 cut(s) 739
Fnu4HI GCNGC 2 cut(s) 6, 9
Fsp4HI GCNGC 2 cut(s) 6, 9
FspBI CTAG 1 cut(s) 321
GluI GCNGC 2 cut(s) 6, 9
GsuI CTGGAG 1 cut(s) 837
HaeIII GGCC 4 cut(s) 302, 723, 877, 953
Hin1II CATG 4 cut(s) 203, 586, 728, 1007
HinfI GANTC 5 cut(s) 13, 136, 245, 769, 1007
HphI GGTGA 2 cut(s) 362, 833
Hpy166II GTNNAC 1 cut(s) 353
Hpy188I TCNGA 6 cut(s) 135, 274, 307, 709, 774, 909
Hpy188III TCNNGA 5 cut(s) 180, 791, 855, 870, 1004
Hpy8I GTNNAC 1 cut(s) 353
HpyAV CCTTC 5 cut(s) 327, 755, 867, 943, 1034
HpyCH4III ACNGT 5 cut(s) 28, 385, 419, 664, 938
HpyCH4IV ACGT 2 cut(s) 269, 366
HpyCH4V TGCA 8 cut(s) 35, 150, 203, 455, 541, 568, 728, 1073
HpyF10VI GCNNNNNNNGC 1 cut(s) 574
HpyF3I CTNAG 6 cut(s) 160, 306, 549, 630, 792, 930
HpySE526I ACGT 2 cut(s) 269, 366
Hsp92II CATG 4 cut(s) 203, 586, 728, 1007
Kzo9I GATC 2 cut(s) 616, 1000
LguI GCTCTTC 1 cut(s) 58
LmnI GCTCC 2 cut(s) 793, 1027
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 1 cut(s) 555
MaeI CTAG 1 cut(s) 321
MaeII ACGT 2 cut(s) 269, 366
MaeIII GTNAC 1 cut(s) 821
MalI GATC 2 cut(s) 618, 1002
MboI GATC 2 cut(s) 616, 1000
MfeI CAATTG 1 cut(s) 990
MhlI GDGCHC 1 cut(s) 936
MluCI AATT 6 cut(s) 590, 779, 842, 865, 889, 990
MlyI GAGTC 3 cut(s) 7, 254, 1016
Mph1103I ATGCAT 1 cut(s) 730
MroXI GAANNNNTTC 1 cut(s) 893
MseI TTAA 2 cut(s) 390, 677
MslI CAYNNNNRTG 2 cut(s) 417, 495
MspA1I CMGCKG 1 cut(s) 8
MspR9I CCNGG 1 cut(s) 430
MunI CAATTG 1 cut(s) 990
MvaI CCWGG 1 cut(s) 430
MwoI GCNNNNNNNGC 1 cut(s) 574
NdeI CATATG 1 cut(s) 739
NdeII GATC 2 cut(s) 616, 1000
NlaIII CATG 4 cut(s) 203, 586, 728, 1007
NlaIV GGNNCC 2 cut(s) 462, 971
NmuCI GTSAC 1 cut(s) 821
NsiI ATGCAT 1 cut(s) 730
NspI RCATGY 1 cut(s) 203
OliI CACNNNNGTG 1 cut(s) 417
PagI TCATGA 1 cut(s) 1003
PceI AGGCCT 2 cut(s) 302, 953
PciSI GCTCTTC 1 cut(s) 58
PdmI GAANNNNTTC 1 cut(s) 893
PfeI GAWTC 2 cut(s) 136, 769
PflFI GACNNNGTC 1 cut(s) 16
PkrI GCNGC 2 cut(s) 7, 10
PleI GAGTC 3 cut(s) 7, 253, 1015
PpsI GAGTC 3 cut(s) 7, 253, 1015
PpuMI RGGWCCY 1 cut(s) 87
Psp1406I AACGTT 1 cut(s) 366
Psp5II RGGWCCY 1 cut(s) 87
Psp6I CCWGG 1 cut(s) 428
PspGI CCWGG 1 cut(s) 428
PspN4I GGNNCC 2 cut(s) 462, 971
PspPI GGNCC 2 cut(s) 87, 721
PspPPI RGGWCCY 1 cut(s) 87
PsyI GACNNNGTC 1 cut(s) 16
RsaI GTAC 4 cut(s) 198, 396, 441, 830
RsaNI GTAC 4 cut(s) 197, 395, 440, 829
RseI CAYNNNNRTG 2 cut(s) 417, 495
SapI GCTCTTC 1 cut(s) 58
SaqAI TTAA 2 cut(s) 390, 677
SatI GCNGC 2 cut(s) 6, 9
Sau3AI GATC 2 cut(s) 616, 1000
Sau96I GGNCC 2 cut(s) 87, 721
SchI GAGTC 3 cut(s) 7, 254, 1016
ScrFI CCNGG 1 cut(s) 430
SduI GDGCHC 1 cut(s) 936
SfaNI GCATC 1 cut(s) 555
SinI GGWCC 1 cut(s) 87
SmiMI CAYNNNNRTG 2 cut(s) 417, 495
Sse9I AATT 6 cut(s) 590, 779, 842, 865, 889, 990
SseBI AGGCCT 2 cut(s) 302, 953
SsiI CCGC 2 cut(s) 8, 641
SspMI CTAG 1 cut(s) 321
StuI AGGCCT 2 cut(s) 302, 953
StyD4I CCNGG 1 cut(s) 428
TaaI ACNGT 5 cut(s) 28, 385, 419, 664, 938
TaiI ACGT 2 cut(s) 272, 369
TaqI TCGA 2 cut(s) 871, 897
TasI AATT 6 cut(s) 590, 779, 842, 865, 889, 990
TatI WGTACW 2 cut(s) 439, 828
TauI GCSGC 1 cut(s) 11
TfiI GAWTC 2 cut(s) 136, 769
Tru1I TTAA 2 cut(s) 390, 677
Tru9I TTAA 2 cut(s) 390, 677
TscAI CASTG 4 cut(s) 298, 390, 820, 941
TseFI GTSAC 1 cut(s) 821
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 821
TspDTI ATGAA 5 cut(s) 234, 291, 855, 939, 962
TspGWI ACGGA 1 cut(s) 392
TspRI CASTG 4 cut(s) 298, 390, 820, 941
Tth111I GACNNNGTC 1 cut(s) 16
VpaK11BI GGWCC 1 cut(s) 87
XapI RAATTY 2 cut(s) 842, 889
XceI RCATGY 1 cut(s) 203
XmnI GAANNNNTTC 1 cut(s) 893
XspI CTAG 1 cut(s) 321
Zsp2I ATGCAT 1 cut(s) 730
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.