Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0014010

Physical Location & Seq

Genomic Coordinates Reverse (-)

40774181 .. 40777859

Gene Structure 3679 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1328600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGCGGCGGCGACTCTGTCTTCGACGGTGTTTGCATTCTCCGCCTCCCGCCCTTCTTCTTCTCTCGGAGCAAGGAGGAGCTTGACGAATTCAGCCTTTTCATCTCGGAATCGTTTCCCTCACAATCCCATTTCAGCTCGTCCGTCGATTTCCAGAGTTCGAGCAACTATTCTGCAAGAAGATGAAGAGAAAGTGGTAGTGGAGGAGTCCTTTGAGTTCAAGGCTTCAACCTTCGATGAATTGAAAGCAAGCAGTGAGAATTCCCCAGAGAATTCGTCTTCAAGTGCTTTTGAGAGCTGGGTTATCAAGTGTGAACAAACCTTCAACATCTTCCTTACGGATACAGTGATAAAGGTACTTGATACTCTGTACCACGACCGAGACTATGCAAGGTTCTTCGTACTGGAAACTATCGCAAGGGTTCCTTACTTTGCTTTTATGTCTGTTCTGCACATGTACGAGAGTTTTGGCTGGTGGAGAAGAGCAGATTATCTGAAGGTGCATTTTGCAGAAAGCTGGAATGAGATGCACCATTTGCTTATCATGGAAGAATTGGGGGGAAACGCTTGGTGGTTTGACCGCTTTCTTGCTCAGCACATCGCAGTCTTCTATTATTTTATGACTGCCTTTATGTATGTAATAAGCCCAAGGATGGCATATCACTTCTCTGAATGTGTAGAGAGCCATGCATTTTCAACCTACGACAAGTTTATCAAGGCCCGAGGAGAGGATTTGAAAAAGATGCCTGCTCCTGAGGTTGCTGTGAAATACTACACTAGCGGTGACATGTACTTATTTGATGAATTTCAAACTTCAAGACCTCCCAATTCTCGAAGGCCAAAAATAGAGAATTTGTACGACACATTTCTGAACATAAGAGATGATGAAGCTGAACACTGTAAGACGATGAAGGCCTGCCAGACTCATGGGAACCTCTCGTCTCCTCACGCACGCACAGAAGACTCCTTAGAAGATGACTCTACCTGCGTCATTCCTCAAACAGATTGTGAAGGTATTGCAGATTGCATAAAGAAATCCGTCACAACAACGCCAGCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006629 GO:0006720 GO:0006721 GO:0006996 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009579 GO:0009657 GO:0009916 GO:0009987 GO:0016043 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016491 GO:0016679 GO:0016682 GO:0042440 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044464 GO:0046148 GO:0055114 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AOX

Protein Analysis

354

Amino Acids

40.63

Weight (kDa)

5.68

Isoelectric Point (pI)

61.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AOX	PF01786	111 - 307	3.6e-41	Alternative oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22260
fragaria_vesca	FvH4_3g01250 FvH4_3g01250 FvH4_3g01250
malus_domestica	MD05G1354300.v1.1 MD10G1328600.v1.1
prunus_persica	Prupe.4G013400_v2.0.a1
pyrus_communis	pycom10g27840
rosa_chinensis	RchiOBHm_Chr5g0001781
rosa_laevigata	RLG00000030972
rosa_multiflora	Rmu_ssc0000237.1_g000013
rosa_roxburghii	Rroxscaffold_1G00071240 Rroxscaffold_1G00074550
rosa_rugosa	Rorug04G0393000
rosa_samantha	Rh5BG017700 Rh5DG015800
rosa_wichuraiana	Rw5G001380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	992
AciI	CCGC	6 cut(s)	5, 8, 42, 49, 580, 780
AcsI	RAATTY	5 cut(s)	88, 259, 271, 803, 850
AcuI	CTGAAG	1 cut(s)	515
AfaI	GTAC	6 cut(s)	357, 371, 402, 458, 791, 857
AfiI	CCNNNNNNNGG	2 cut(s)	652, 727
AflIII	ACRYGT	2 cut(s)	453, 786
AgsI	TTSAA	9 cut(s)	220, 228, 244, 282, 325, 696, 736, 809, 816
AluBI	AGCT	5 cut(s)	81, 137, 297, 516, 890
AluI	AGCT	5 cut(s)	81, 137, 297, 516, 890
Alw26I	GTCTC	2 cut(s)	375, 945
Ama87I	CYCGRG	1 cut(s)	720
AoxI	GGCC	3 cut(s)	717, 836, 912
ApoI	RAATTY	5 cut(s)	88, 259, 271, 803, 850
ArsI	GACNNNNNNTTYG	1 cut(s)	36
Asp700I	GAANNNNTTC	1 cut(s)	113
AspS9I	GGNCC	1 cut(s)	718
AsuHPI	GGTGA	1 cut(s)	794
AvaI	CYCGRG	1 cut(s)	720
AxyI	CCTNAGG	1 cut(s)	753
BbsI	GAAGAC	4 cut(s)	12, 270, 598, 966
BccI	CCATC	1 cut(s)	646
BciVI	GTATCC	1 cut(s)	334
BcoDI	GTCTC	2 cut(s)	375, 945
BfaI	CTAG	1 cut(s)	777
BfuAI	ACCTGC	1 cut(s)	992
BfuI	GTATCC	1 cut(s)	334
BisI	GCNGC	2 cut(s)	6, 9
BlpI	GCTNAGC	1 cut(s)	591
BlsI	GCNGC	2 cut(s)	7, 10
BmeT110I	CYCGRG	1 cut(s)	720
BmgT120I	GGNCC	1 cut(s)	718
BmiI	GGNNCC	2 cut(s)	423, 932
BmsI	GCATC	2 cut(s)	516, 732
BpiI	GAAGAC	4 cut(s)	12, 270, 598, 966
Bpu1102I	GCTNAGC	1 cut(s)	591
BsaJI	CCNNGG	2 cut(s)	647, 721
Bsc4I	CCNNNNNNNGG	2 cut(s)	652, 727
Bse1I	ACTGG	1 cut(s)	408
Bse21I	CCTNAGG	1 cut(s)	753
BseDI	CCNNGG	2 cut(s)	647, 721
BseGI	GGATG	1 cut(s)	657
BseLI	CCNNNNNNNGG	2 cut(s)	652, 727
BseMII	CTCAG	2 cut(s)	605, 744
BseNI	ACTGG	1 cut(s)	408
BseRI	GAGGAG	4 cut(s)	91, 218, 738, 933
BseYI	CCCAGC	1 cut(s)	297
BsgI	GTGCAG	1 cut(s)	434
Bsh1285I	CGRYCG	1 cut(s)	379
BshFI	GGCC	3 cut(s)	719, 838, 914
BsiEI	CGRYCG	1 cut(s)	379
BsiHKCI	CYCGRG	1 cut(s)	720
BslI	CCNNNNNNNGG	2 cut(s)	652, 727
BsmAI	GTCTC	2 cut(s)	375, 945
BsmBI	CGTCTC	1 cut(s)	945
BsmI	GAATGC	1 cut(s)	35
BsnI	GGCC	3 cut(s)	719, 838, 914
BsoBI	CYCGRG	1 cut(s)	720
Bsp1720I	GCTNAGC	1 cut(s)	591
BspACI	CCGC	6 cut(s)	5, 8, 42, 49, 580, 780
BspANI	GGCC	3 cut(s)	719, 838, 914
BspCNI	CTCAG	2 cut(s)	604, 745
BspLI	GGNNCC	2 cut(s)	423, 932
BspMI	ACCTGC	1 cut(s)	992
BspQI	GCTCTTC	1 cut(s)	475
BsrI	ACTGG	1 cut(s)	408
BssECI	CCNNGG	2 cut(s)	647, 721
BssT1I	CCWWGG	1 cut(s)	647
Bst4CI	ACNGT	3 cut(s)	28, 346, 899
Bst6I	CTCTTC	2 cut(s)	180, 475
BstAPI	GCANNNNNTGC	1 cut(s)	535
BstC8I	GCNNGC	5 cut(s)	250, 747, 916, 952, 1053
BstDEI	CTNAG	3 cut(s)	591, 753, 967
BstF5I	GGATG	1 cut(s)	657
BstMAI	GTCTC	2 cut(s)	375, 945
BstMCI	CGRYCG	1 cut(s)	379
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 535
BstNSI	RCATGY	2 cut(s)	457, 790
BstV2I	GAAGAC	4 cut(s)	12, 270, 598, 966
BstXI	CCANNNNNNTGG	1 cut(s)	926
Bsu36I	CCTNAGG	1 cut(s)	753
BsuI	GTATCC	1 cut(s)	334
BsuRI	GGCC	3 cut(s)	719, 838, 914
BtgZI	GCGATG	1 cut(s)	583
BtsCI	GGATG	1 cut(s)	657
BtsI	GCAGTG	1 cut(s)	259
BtsIMutI	CAGTG	3 cut(s)	259, 351, 895
BveI	ACCTGC	1 cut(s)	992
Cac8I	GCNNGC	5 cut(s)	250, 747, 916, 952, 1053
Cfr13I	GGNCC	1 cut(s)	718
CseI	GACGC	1 cut(s)	976
Csp6I	GTAC	6 cut(s)	356, 370, 401, 457, 790, 856
CviAII	CATG	5 cut(s)	454, 544, 686, 787, 926
CviQI	GTAC	6 cut(s)	356, 370, 401, 457, 790, 856
DdeI	CTNAG	3 cut(s)	591, 753, 967
Eam1104I	CTCTTC	2 cut(s)	180, 475
EarI	CTCTTC	2 cut(s)	180, 475
EciI	GGCGGA	1 cut(s)	31
Eco130I	CCWWGG	1 cut(s)	647
Eco147I	AGGCCT	1 cut(s)	914
Eco57I	CTGAAG	1 cut(s)	515
Eco81I	CCTNAGG	1 cut(s)	753
Eco88I	CYCGRG	1 cut(s)	720
EcoRI	GAATTC	3 cut(s)	88, 259, 271
EcoT14I	CCWWGG	1 cut(s)	647
EcoT22I	ATGCAT	1 cut(s)	691
ErhI	CCWWGG	1 cut(s)	647
Esp3I	CGTCTC	1 cut(s)	945
FaeI	CATG	5 cut(s)	457, 547, 689, 790, 929
FalI	AAGNNNNNCTT	2 cut(s)	409, 441
FatI	CATG	5 cut(s)	453, 543, 685, 786, 925
FauI	CCCGC	1 cut(s)	56
Fnu4HI	GCNGC	2 cut(s)	6, 9
FokI	GGATG	1 cut(s)	664
Fsp4HI	GCNGC	2 cut(s)	6, 9
FspBI	CTAG	1 cut(s)	777
GluI	GCNGC	2 cut(s)	6, 9
GsaI	CCCAGC	1 cut(s)	301
HaeIII	GGCC	3 cut(s)	719, 838, 914
HgaI	GACGC	1 cut(s)	976
Hin1II	CATG	5 cut(s)	457, 547, 689, 790, 929
HinfI	GANTC	6 cut(s)	13, 109, 206, 922, 962, 977
HphI	GGTGA	1 cut(s)	794
Hpy166II	GTNNAC	1 cut(s)	314
Hpy188I	TCNGA	5 cut(s)	68, 108, 495, 670, 870
Hpy188III	TCNNGA	4 cut(s)	153, 752, 816, 831
Hpy8I	GTNNAC	1 cut(s)	314
Hpy99I	CGWCG	2 cut(s)	28, 148
HpyAV	CCTTC	7 cut(s)	63, 241, 331, 490, 828, 904, 1004
HpyCH4III	ACNGT	3 cut(s)	28, 346, 899
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 535
HpyF3I	CTNAG	3 cut(s)	591, 753, 967
Hsp92II	CATG	5 cut(s)	457, 547, 689, 790, 929
LguI	GCTCTTC	1 cut(s)	475
LmnI	GCTCC	3 cut(s)	68, 78, 754
LweI	GCATC	2 cut(s)	516, 732
MaeI	CTAG	1 cut(s)	777
MaeIII	GTNAC	2 cut(s)	782, 1039
MluCI	AATT	8 cut(s)	88, 239, 259, 271, 551, 803, 826, 850
MlyI	GAGTC	5 cut(s)	7, 215, 916, 956, 971
Mph1103I	ATGCAT	1 cut(s)	691
MroXI	GAANNNNTTC	1 cut(s)	113
Mva1269I	GAATGC	1 cut(s)	35
MwoI	GCNNNNNNNGC	2 cut(s)	41, 535
NlaIII	CATG	5 cut(s)	457, 547, 689, 790, 929
NlaIV	GGNNCC	2 cut(s)	423, 932
NmuCI	GTSAC	2 cut(s)	782, 1039
NsiI	ATGCAT	1 cut(s)	691
NspI	RCATGY	2 cut(s)	457, 790
PceI	AGGCCT	1 cut(s)	914
PciI	ACATGT	2 cut(s)	453, 786
PciSI	GCTCTTC	1 cut(s)	475
PctI	GAATGC	1 cut(s)	35
PdmI	GAANNNNTTC	1 cut(s)	113
PfeI	GAWTC	1 cut(s)	109
PflFI	GACNNNGTC	1 cut(s)	16
PkrI	GCNGC	2 cut(s)	7, 10
PleI	GAGTC	5 cut(s)	7, 214, 916, 956, 971
PpsI	GAGTC	5 cut(s)	7, 214, 916, 956, 971
PscI	ACATGT	2 cut(s)	453, 786
PspFI	CCCAGC	1 cut(s)	297
PspN4I	GGNNCC	2 cut(s)	423, 932
PspPI	GGNCC	1 cut(s)	718
PsyI	GACNNNGTC	1 cut(s)	16
RsaI	GTAC	6 cut(s)	357, 371, 402, 458, 791, 857
RsaNI	GTAC	6 cut(s)	356, 370, 401, 457, 790, 856
SapI	GCTCTTC	1 cut(s)	475
SatI	GCNGC	2 cut(s)	6, 9
Sau96I	GGNCC	1 cut(s)	718
SchI	GAGTC	5 cut(s)	7, 215, 916, 956, 971
SfaNI	GCATC	2 cut(s)	516, 732
Sse9I	AATT	8 cut(s)	88, 239, 259, 271, 551, 803, 826, 850
SseBI	AGGCCT	1 cut(s)	914
SsiI	CCGC	6 cut(s)	5, 8, 42, 49, 580, 780
SspMI	CTAG	1 cut(s)	777
StuI	AGGCCT	1 cut(s)	914
StyI	CCWWGG	1 cut(s)	647
TaaI	ACNGT	3 cut(s)	28, 346, 899
TaqI	TCGA	5 cut(s)	23, 146, 160, 234, 832
TaqII	GACCGA	1 cut(s)	393
TasI	AATT	8 cut(s)	88, 239, 259, 271, 551, 803, 826, 850
TatI	WGTACW	1 cut(s)	789
TauI	GCSGC	2 cut(s)	8, 11
TfiI	GAWTC	1 cut(s)	109
TscAI	CASTG	3 cut(s)	259, 351, 902
TseFI	GTSAC	2 cut(s)	782, 1039
Tsp45I	GTSAC	2 cut(s)	782, 1039
TspDTI	ATGAA	6 cut(s)	90, 198, 252, 816, 900, 923
TspGWI	ACGGA	3 cut(s)	132, 353, 1027
TspRI	CASTG	3 cut(s)	259, 351, 902
Tth111I	GACNNNGTC	1 cut(s)	16
XapI	RAATTY	5 cut(s)	88, 259, 271, 803, 850
XceI	RCATGY	2 cut(s)	457, 790
XmnI	GAANNNNTTC	1 cut(s)	113
XspI	CTAG	1 cut(s)	777
Zsp2I	ATGCAT	1 cut(s)	691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.