Rroxscaffold_1G00071240

Belongs to the alternative oxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0014010
Physical Location & Seq
Forward (+)
92117622 .. 92121234
3613 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00071240.1

Sequence Viewer

Length: 1104 bp
ATGGCAGCGGCGACTCTGTCTTCGACAGTGTTTGCAATCTCAACTTCCTGCCCTTCTTCTTCTTCTTCTTCTTCGTCTCTCAAAGCAAGGACCTTGAAGACTTCAGCTTTTTCTTCTTCGTCCTCGCTCTGCTCTCTGAATCGTTTTCCTTGCAATCCCATCTCAGCTCGTCCATCGTGTTCCAGAAATTTGTATAGGGTACATGCAACTATTCTCCAAGATGAAGAAGAGAAAGTGGTGGTGGAGGAGTCCTTTGAGTTCAAGGCAACTACGTCTGATGAAGTGAAAGCCAGCAGTGGGGGGGCCTCTGAGAGTGAGCCTTCTAGTGATTTTGAGAAATGGGTTATCAAGGGCGAACAATCCATCAACGTTTTCCTTACGGATACAGTGATTAAGGTACTTGATACTCTTTACCACGACCGTGATTATGCGAGGTTCTTTGTACTGGAAACTATTGCAAGGGTTCCCTACTTCGCCTTTATGTCTGTTCTACACATGTATGAAACTTTTGGCTGGTGGAGAAGAAGAGATTATTTGAAAGTGCATTTTGCTGAGAGCTGGAATGAGATGCACCACTTGCTTATCATGGAAGAATTGGGAGGAAATGCTTGGTGGTTTGATCGCTTTCTTGCTCAGCACATTGCGGTCTTCTATTACTTTATGACAGTTTTTATGTATATAATAAGCCCACGAATGGCATATCACTTCTCTGAATGTGTAGAGGGCCATGCATTTTCAACATATGACAAATTTATCAAGGCTGAAGGAGAGAATCTGAAAAAATTGCCTGCTCCTGAGGTTGCTGTAAAATACTACACTGGAGGTGACTTGTACTTGTTTGATGAATTTCAAACTTCCAGACCTCCCAATTCTCGAAGGCCGAAAATAGAGAATTTGTTCGATGTATTTCTGAACGTAAGAGATGATGAAGCTGAGCACTGTAAGACGATGAAGGCCTGCCAAACTCACGGGAACCTCTTTTCTCCTCATTCAATTGAAGAAGATCCCTTGGAAGAAGAGTCTATCTGTGTCGCTCCTCAAACAGATTGTGAAGGTATTGTAGATTGTATTACAAAATCCGTTCCAACGAAATCAGCAGAGTGA

Protein Analysis

367

Amino Acids

41.81

Weight (kDa)

5.31

Isoelectric Point (pI)

58.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AOX PF01786 126 - 321 1.6e-41 Alternative oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014010)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G22260
fragaria_vesca FvH4_3g01250 FvH4_3g01250 FvH4_3g01250
malus_domestica MD05G1354300.v1.1 MD10G1328600.v1.1
prunus_persica Prupe.4G013400_v2.0.a1
pyrus_communis pycom10g27840
rosa_chinensis RchiOBHm_Chr5g0001781
rosa_laevigata RLG00000030972
rosa_multiflora Rmu_ssc0000237.1_g000013
rosa_roxburghii Rroxscaffold_1G00071240 Rroxscaffold_1G00074550
rosa_rugosa Rorug04G0393000
rosa_samantha Rh5BG017700 Rh5DG015800
rosa_wichuraiana Rw5G001380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 8, 644
AclI AACGTT 1 cut(s) 369
AclWI GGATC 1 cut(s) 998
AcsI RAATTY 4 cut(s) 187, 749, 845, 892
AcuI CTGAAG 2 cut(s) 87, 783
AfaI GTAC 4 cut(s) 201, 399, 444, 833
AfiI CCNNNNNNNGG 2 cut(s) 297, 694
AflIII ACRYGT 1 cut(s) 495
AgsI TTSAA 7 cut(s) 97, 262, 538, 738, 851, 993, 998
AleI CACNNNNGTG 1 cut(s) 420
AluBI AGCT 4 cut(s) 107, 167, 558, 932
AluI AGCT 4 cut(s) 107, 167, 558, 932
Alw21I GWGCWC 1 cut(s) 939
Alw26I GTCTC 1 cut(s) 81
AlwI GGATC 1 cut(s) 998
AoxI GGCC 4 cut(s) 303, 724, 878, 954
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 4 cut(s) 187, 749, 845, 892
ArsI GACNNNNNNTTYG 1 cut(s) 36
Asp700I GAANNNNTTC 1 cut(s) 896
AspS9I GGNCC 3 cut(s) 90, 303, 724
AsuHPI GGTGA 1 cut(s) 836
AvaII GGWCC 1 cut(s) 90
AxyI CCTNAGG 1 cut(s) 795
BbsI GAAGAC 3 cut(s) 12, 104, 640
Bbv12I GWGCWC 1 cut(s) 939
BbvI GCAGC 1 cut(s) 17
BccI CCATC 3 cut(s) 167, 181, 371
BciVI GTATCC 1 cut(s) 376
BcoDI GTCTC 1 cut(s) 81
BfaI CTAG 1 cut(s) 324
BfuI GTATCC 1 cut(s) 376
BisI GCNGC 2 cut(s) 6, 9
BlpI GCTNAGC 2 cut(s) 633, 933
BlsI GCNGC 2 cut(s) 7, 10
Bme18I GGWCC 1 cut(s) 90
BmgT120I GGNCC 3 cut(s) 90, 303, 724
BmiI GGNNCC 3 cut(s) 304, 465, 974
BmsI GCATC 1 cut(s) 558
BpiI GAAGAC 3 cut(s) 12, 104, 640
BpmI CTGGAG 1 cut(s) 840
Bpu1102I GCTNAGC 2 cut(s) 633, 933
BsaJI CCNNGG 1 cut(s) 1008
Bsc4I CCNNNNNNNGG 2 cut(s) 297, 694
Bse1I ACTGG 2 cut(s) 450, 823
Bse21I CCTNAGG 1 cut(s) 795
Bse3DI GCAATG 1 cut(s) 639
BseDI CCNNGG 1 cut(s) 1008
BseLI CCNNNNNNNGG 2 cut(s) 297, 694
BseMI GCAATG 1 cut(s) 639
BseMII CTCAG 6 cut(s) 177, 300, 543, 647, 786, 924
BseNI ACTGG 2 cut(s) 450, 823
BseRI GAGGAG 3 cut(s) 260, 975, 1026
BseXI GCAGC 1 cut(s) 17
Bsh1285I CGRYCG 1 cut(s) 421
BshFI GGCC 4 cut(s) 305, 726, 880, 956
BsiEI CGRYCG 1 cut(s) 421
BsiHKAI GWGCWC 1 cut(s) 939
BslI CCNNNNNNNGG 2 cut(s) 297, 694
BsmAI GTCTC 1 cut(s) 81
BsmBI CGTCTC 1 cut(s) 81
BsnI GGCC 4 cut(s) 305, 726, 880, 956
Bsp1286I GDGCHC 1 cut(s) 939
Bsp143I GATC 2 cut(s) 619, 1003
Bsp1720I GCTNAGC 2 cut(s) 633, 933
BspACI CCGC 2 cut(s) 8, 644
BspANI GGCC 4 cut(s) 305, 726, 880, 956
BspCNI CTCAG 6 cut(s) 176, 301, 544, 646, 787, 925
BspLI GGNNCC 3 cut(s) 304, 465, 974
BspPI GGATC 1 cut(s) 998
BsrDI GCAATG 1 cut(s) 639
BsrI ACTGG 2 cut(s) 450, 823
BssECI CCNNGG 1 cut(s) 1008
BssMI GATC 2 cut(s) 619, 1003
BssT1I CCWWGG 1 cut(s) 1008
Bst4CI ACNGT 5 cut(s) 28, 388, 422, 667, 941
Bst6I CTCTTC 3 cut(s) 222, 520, 1011
BstAPI GCANNNNNTGC 1 cut(s) 577
BstC8I GCNNGC 3 cut(s) 292, 789, 958
BstDEI CTNAG 6 cut(s) 163, 309, 552, 633, 795, 933
BstKTI GATC 2 cut(s) 622, 1006
BstMAI GTCTC 1 cut(s) 81
BstMBI GATC 2 cut(s) 619, 1003
BstMCI CGRYCG 1 cut(s) 421
BstMWI GCNNNNNNNGC 1 cut(s) 577
BstNSI RCATGY 2 cut(s) 206, 499
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 3 cut(s) 12, 104, 640
BstX2I RGATCY 1 cut(s) 1003
BstYI RGATCY 1 cut(s) 1003
Bsu36I CCTNAGG 1 cut(s) 795
BsuI GTATCC 1 cut(s) 376
BsuRI GGCC 4 cut(s) 305, 726, 880, 956
BtsI GCAGTG 1 cut(s) 301
BtsIMutI CAGTG 5 cut(s) 33, 301, 393, 816, 937
Cac8I GCNNGC 3 cut(s) 292, 789, 958
Cfr13I GGNCC 3 cut(s) 90, 303, 724
Csp6I GTAC 4 cut(s) 200, 398, 443, 832
CviAII CATG 4 cut(s) 203, 496, 586, 728
CviQI GTAC 4 cut(s) 200, 398, 443, 832
DdeI CTNAG 6 cut(s) 163, 309, 552, 633, 795, 933
DpnI GATC 2 cut(s) 621, 1005
DpnII GATC 2 cut(s) 619, 1003
Eam1104I CTCTTC 3 cut(s) 222, 520, 1011
EarI CTCTTC 3 cut(s) 222, 520, 1011
Eco130I CCWWGG 1 cut(s) 1008
Eco147I AGGCCT 1 cut(s) 956
Eco47I GGWCC 1 cut(s) 90
Eco57I CTGAAG 2 cut(s) 87, 783
Eco81I CCTNAGG 1 cut(s) 795
EcoO109I RGGNCCY 2 cut(s) 90, 303
EcoT14I CCWWGG 1 cut(s) 1008
EcoT22I ATGCAT 1 cut(s) 733
ErhI CCWWGG 1 cut(s) 1008
Esp3I CGTCTC 1 cut(s) 81
FaeI CATG 4 cut(s) 206, 499, 589, 731
FatI CATG 4 cut(s) 202, 495, 585, 727
FauNDI CATATG 1 cut(s) 742
Fnu4HI GCNGC 2 cut(s) 6, 9
Fsp4HI GCNGC 2 cut(s) 6, 9
FspBI CTAG 1 cut(s) 324
GluI GCNGC 2 cut(s) 6, 9
GsuI CTGGAG 1 cut(s) 840
HaeIII GGCC 4 cut(s) 305, 726, 880, 956
Hin1II CATG 4 cut(s) 206, 499, 589, 731
HinfI GANTC 5 cut(s) 13, 139, 248, 772, 1019
HphI GGTGA 1 cut(s) 836
Hpy188I TCNGA 6 cut(s) 138, 277, 310, 712, 777, 912
Hpy188III TCNNGA 4 cut(s) 183, 794, 858, 873
HpyAV CCTTC 6 cut(s) 63, 330, 758, 870, 946, 1046
HpyCH4III ACNGT 5 cut(s) 28, 388, 422, 667, 941
HpyCH4IV ACGT 3 cut(s) 272, 369, 915
HpyCH4V TGCA 7 cut(s) 35, 153, 206, 458, 544, 571, 731
HpyF10VI GCNNNNNNNGC 1 cut(s) 577
HpyF3I CTNAG 6 cut(s) 163, 309, 552, 633, 795, 933
HpySE526I ACGT 3 cut(s) 272, 369, 915
Hsp92II CATG 4 cut(s) 206, 499, 589, 731
Kzo9I GATC 2 cut(s) 619, 1003
LmnI GCTCC 2 cut(s) 796, 1039
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 1 cut(s) 558
MaeI CTAG 1 cut(s) 324
MaeII ACGT 3 cut(s) 272, 369, 915
MaeIII GTNAC 1 cut(s) 824
MalI GATC 2 cut(s) 621, 1005
MboI GATC 2 cut(s) 619, 1003
MfeI CAATTG 1 cut(s) 993
MflI RGATCY 1 cut(s) 1003
MhlI GDGCHC 1 cut(s) 939
MluCI AATT 8 cut(s) 187, 593, 749, 782, 845, 868, 892, 993
MlyI GAGTC 3 cut(s) 7, 257, 1028
Mph1103I ATGCAT 1 cut(s) 733
MroXI GAANNNNTTC 1 cut(s) 896
MseI TTAA 1 cut(s) 393
MslI CAYNNNNRTG 2 cut(s) 420, 498
MspA1I CMGCKG 1 cut(s) 8
MunI CAATTG 1 cut(s) 993
MwoI GCNNNNNNNGC 1 cut(s) 577
NdeI CATATG 1 cut(s) 742
NdeII GATC 2 cut(s) 619, 1003
NlaIII CATG 4 cut(s) 206, 499, 589, 731
NlaIV GGNNCC 3 cut(s) 304, 465, 974
NmuCI GTSAC 1 cut(s) 824
NsiI ATGCAT 1 cut(s) 733
NspI RCATGY 2 cut(s) 206, 499
OliI CACNNNNGTG 1 cut(s) 420
PceI AGGCCT 1 cut(s) 956
PciI ACATGT 1 cut(s) 495
PdmI GAANNNNTTC 1 cut(s) 896
PfeI GAWTC 2 cut(s) 139, 772
PflFI GACNNNGTC 1 cut(s) 16
PkrI GCNGC 2 cut(s) 7, 10
PleI GAGTC 3 cut(s) 7, 256, 1027
PpsI GAGTC 3 cut(s) 7, 256, 1027
PpuMI RGGWCCY 1 cut(s) 90
PscI ACATGT 1 cut(s) 495
Psp1406I AACGTT 1 cut(s) 369
Psp5II RGGWCCY 1 cut(s) 90
PspN4I GGNNCC 3 cut(s) 304, 465, 974
PspPI GGNCC 3 cut(s) 90, 303, 724
PspPPI RGGWCCY 1 cut(s) 90
PsuI RGATCY 1 cut(s) 1003
PsyI GACNNNGTC 1 cut(s) 16
RsaI GTAC 4 cut(s) 201, 399, 444, 833
RsaNI GTAC 4 cut(s) 200, 398, 443, 832
RseI CAYNNNNRTG 2 cut(s) 420, 498
SaqAI TTAA 1 cut(s) 393
SatI GCNGC 2 cut(s) 6, 9
Sau3AI GATC 2 cut(s) 619, 1003
Sau96I GGNCC 3 cut(s) 90, 303, 724
SchI GAGTC 3 cut(s) 7, 257, 1028
SduI GDGCHC 1 cut(s) 939
SfaNI GCATC 1 cut(s) 558
SinI GGWCC 1 cut(s) 90
SmiMI CAYNNNNRTG 2 cut(s) 420, 498
Sse9I AATT 8 cut(s) 187, 593, 749, 782, 845, 868, 892, 993
SseBI AGGCCT 1 cut(s) 956
SsiI CCGC 2 cut(s) 8, 644
SspMI CTAG 1 cut(s) 324
StuI AGGCCT 1 cut(s) 956
StyI CCWWGG 1 cut(s) 1008
TaaI ACNGT 5 cut(s) 28, 388, 422, 667, 941
TaiI ACGT 3 cut(s) 275, 372, 918
TaqI TCGA 3 cut(s) 23, 874, 900
TasI AATT 8 cut(s) 187, 593, 749, 782, 845, 868, 892, 993
TatI WGTACW 2 cut(s) 442, 831
TauI GCSGC 1 cut(s) 11
TfiI GAWTC 2 cut(s) 139, 772
Tru1I TTAA 1 cut(s) 393
Tru9I TTAA 1 cut(s) 393
TscAI CASTG 5 cut(s) 33, 301, 393, 823, 944
TseFI GTSAC 1 cut(s) 824
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 824
TspDTI ATGAA 6 cut(s) 237, 294, 516, 858, 942, 965
TspGWI ACGGA 2 cut(s) 395, 1069
TspRI CASTG 5 cut(s) 33, 301, 393, 823, 944
Tth111I GACNNNGTC 1 cut(s) 16
VpaK11BI GGWCC 1 cut(s) 90
XapI RAATTY 4 cut(s) 187, 749, 845, 892
XceI RCATGY 2 cut(s) 206, 499
XmnI GAANNNNTTC 1 cut(s) 896
XspI CTAG 1 cut(s) 324
Zsp2I ATGCAT 1 cut(s) 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.