FvH4_3g02240

GPI-anchored protein At1g61900-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
1136867 .. 1140924
4058 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g02240.t2

Sequence Viewer

Length: 1338 bp
ATGTCTTGTCTACAACTCCTCCTCATCTTGGTCCTCTGTGTCCATGTATCTTGTTGCTGCGGTTTGGATCCTCGTAAAGATTCTGTCTTGACAATCAGGCAAAGAGATAGTATGTTACCTATGATACCTCCAACCGCGGCTCCCAAGCCATTTCTTCCCCTTCTTGCTCCTTCGCCATTGGCACCCTTCACAAACATTACTGTTCCGAAAGTATCAGGACAATGTTTGCTGAACTTCAGTGCTTCCGAGAGTTTGATGAGTACGACTGCAATTGATTGTTGGTCGGTTTTTGCACCATTGCTGGCGAATGTAATTTGTTGCCCGCAGTTGGAAGCTACTATCACTATCCTCATTGGTCAGTCCAGTAAGTACACCAATGTGCTTGCTTTAAACGGGACGGCTGCAAAATACTGTCTATCAGATATAAAGCAGATTTTGGTTAGCCAGGGAGCAAATGACACCCTTGCTCAAATATGCTCAGTTCGTTCAACAGATCTCACGGATGCATCTTGCCCGATCATTGATGTAACTGAATTTGAGGAGACAGTGGATACTTCCAAATTGGTTGCTGCGTGCCAGAAGATAGACCTTGTGAAAGAATGCTGTGCCCAAACATGTCAGAATGCCATATTAGAAGCTGCTACGAGAATTGCTTCGAAAGCTTCTGATCTTTTGAGCACAGACGGTGGTCGTGTCTTACCTGATCACATAAGTAGAGTCAATGACTGCAAAAACATTGTCCTTCGCTGGCTGGCAAGTAAATTCAATCCTTCTCATGCCAAGGAACTTCTAAGGGGGCTCTCAAATTGCAAGATTAACAAGGTTTGTCCCCTGGTCTTCCCCAATATGAAACATGTTGCACTTGGCTGTGGGGATGAGATAAGAAACCAGACAGCTTGTTGTACAGCAATGGACAGCTACGTCTCCCACTTACAAAAGCAGAGTTTCATAACCAACTTGCAAGCTTTGGATTGTGCTGCATCACTGGGAATGAAATTGAGGAAATCAAATATTACCAAAGATGTGTATAGCCTATGTCATATAAGCCTCAAGGATTTCTCCCTTCAAGTTGGAAGTCAAGCATCCGGATGTCTTTTGCCAAGCTTGCCTTCAGATGCAATATTTGAAAGTTCAGGGGTCAGCTTCCTTTGTGATTTGAATGATAACATTCCAGCTCCCTGGCCCACCTCTTCTCAAGGAGCAGCTTCAACATGCAGTAAAGGTGTCAAGATTCCTGCACTTCCTGCAGCAGCATCTGCAGAGAGTGGCTATTACAACAATGTTTTGATGCTTTCTCTGTTCATTGCTTTCGCGATGGCCCTTTTGATTTTCTTGTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

446

Amino Acids

47.59

Weight (kDa)

6.91

Isoelectric Point (pI)

52.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPARK PF19160 72 - 220 3.8e-23 SPARK
At1g61900 PF26584 274 - 347 6.4e-37 At1g61900-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 920
AccB1I GGYRCC 1 cut(s) 181
AccI GTMKAC 1 cut(s) 10
AccII CGCG 2 cut(s) 137, 1313
AccIII TCCGGA 1 cut(s) 1085
AciI CCGC 4 cut(s) 60, 135, 137, 323
AclWI GGATC 2 cut(s) 62, 75
AcsI RAATTY 2 cut(s) 533, 761
AcuI CTGAAG 2 cut(s) 220, 1095
AfaI GTAC 3 cut(s) 262, 371, 904
AfiI CCNNNNNNNGG 2 cut(s) 28, 328
AflIII ACRYGT 2 cut(s) 614, 853
AgsI TTSAA 6 cut(s) 489, 766, 1067, 1127, 1159, 1209
AjnI CCWGG 3 cut(s) 444, 831, 1178
AjuI GAANNNNNNNTTGG 2 cut(s) 1093, 1125
AleI CACNNNNGTG 1 cut(s) 377
Alw21I GWGCWC 1 cut(s) 680
Alw26I GTCTC 2 cut(s) 536, 928
AlwI GGATC 2 cut(s) 62, 75
AlwNI CAGNNNCTG 1 cut(s) 1256
Aor13HI TCCGGA 1 cut(s) 1085
AoxI GGCC 2 cut(s) 1181, 1317
ApeKI GCWGC 8 cut(s) 57, 401, 569, 638, 977, 1202, 1247, 1250
ApoI RAATTY 2 cut(s) 533, 761
ArsI GACNNNNNNTTYG 2 cut(s) 723, 755
Asp700I GAANNNNTTC 1 cut(s) 652
AspS9I GGNCC 3 cut(s) 31, 1182, 1318
AsuII TTCGAA 1 cut(s) 656
AvaII GGWCC 1 cut(s) 31
BaeGI GKGCMC 1 cut(s) 610
BamHI GGATCC 1 cut(s) 67
BanI GGYRCC 1 cut(s) 181
BanII GRGCYC 1 cut(s) 801
BbsI GAAGAC 1 cut(s) 829
Bbv12I GWGCWC 1 cut(s) 680
BbvI GCAGC 8 cut(s) 44, 388, 556, 625, 964, 1214, 1259, 1262
BccI CCATC 1 cut(s) 1309
BceAI ACGGC 1 cut(s) 414
BciT130I CCWGG 3 cut(s) 446, 833, 1180
BciVI GTATCC 1 cut(s) 544
BclI TGATCA 1 cut(s) 703
BcoDI GTCTC 2 cut(s) 536, 928
BfmI CTRYAG 2 cut(s) 1245, 1257
BfuI GTATCC 1 cut(s) 544
BglII AGATCT 1 cut(s) 493
BisI GCNGC 9 cut(s) 58, 138, 402, 570, 639, 978, 1203, 1248, 1251
BlsI GCNGC 9 cut(s) 59, 139, 403, 571, 640, 979, 1204, 1249, 1252
Bme1390I CCNGG 3 cut(s) 446, 833, 1180
Bme18I GGWCC 1 cut(s) 31
BmgT120I GGNCC 3 cut(s) 31, 1182, 1318
BmiI GGNNCC 3 cut(s) 69, 141, 183
BmrFI CCNGG 3 cut(s) 446, 833, 1180
BmrI ACTGGG 1 cut(s) 995
BmsI GCATC 7 cut(s) 493, 515, 989, 1091, 1105, 1262, 1278
BmuI ACTGGG 1 cut(s) 995
BoxI GACNNNNGTC 1 cut(s) 687
BpiI GAAGAC 1 cut(s) 829
Bpu14I TTCGAA 1 cut(s) 656
BpuEI CTTGAG 2 cut(s) 1034, 1179
BsaJI CCNNGG 5 cut(s) 135, 445, 780, 831, 1178
BsaWI WCCGGW 1 cut(s) 1085
BsaXI ACNNNNNCTCC 3 cut(s) 33, 124, 154
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 328
Bse1I ACTGG 2 cut(s) 363, 990
Bse3DI GCAATG 3 cut(s) 296, 915, 1302
BseAI TCCGGA 1 cut(s) 1085
BseBI CCWGG 3 cut(s) 446, 833, 1180
BseDI CCNNGG 5 cut(s) 135, 445, 780, 831, 1178
BseGI GGATG 4 cut(s) 508, 880, 1082, 1094
BseLI CCNNNNNNNGG 2 cut(s) 28, 328
BseMI GCAATG 3 cut(s) 296, 915, 1302
BseMII CTCAG 1 cut(s) 492
BseNI ACTGG 2 cut(s) 363, 990
BseRI GAGGAG 3 cut(s) 8, 11, 554
BseSI GKGCMC 1 cut(s) 610
BseXI GCAGC 8 cut(s) 44, 388, 556, 625, 964, 1214, 1259, 1262
BsgI GTGCAG 1 cut(s) 1221
Bsh1236I CGCG 2 cut(s) 137, 1313
BshFI GGCC 2 cut(s) 1183, 1319
BshNI GGYRCC 1 cut(s) 181
BsiHKAI GWGCWC 1 cut(s) 680
BsiSI CCGG 1 cut(s) 1086
BslFI GGGAC 2 cut(s) 409, 813
BslI CCNNNNNNNGG 2 cut(s) 28, 328
BsmAI GTCTC 2 cut(s) 536, 928
BsmBI CGTCTC 1 cut(s) 928
BsmFI GGGAC 2 cut(s) 409, 813
BsmI GAATGC 2 cut(s) 605, 628
BsnI GGCC 2 cut(s) 1183, 1319
Bsp119I TTCGAA 1 cut(s) 656
Bsp1286I GDGCHC 3 cut(s) 610, 680, 801
Bsp13I TCCGGA 1 cut(s) 1085
Bsp1407I TGTACA 1 cut(s) 902
Bsp143I GATC 5 cut(s) 67, 493, 516, 667, 703
Bsp68I TCGCGA 1 cut(s) 1313
BspACI CCGC 4 cut(s) 60, 135, 137, 323
BspANI GGCC 2 cut(s) 1183, 1319
BspCNI CTCAG 1 cut(s) 491
BspEI TCCGGA 1 cut(s) 1085
BspFNI CGCG 2 cut(s) 137, 1313
BspLI GGNNCC 3 cut(s) 69, 141, 183
BspMAI CTGCAG 2 cut(s) 1249, 1261
BspPI GGATC 2 cut(s) 62, 75
BspT104I TTCGAA 1 cut(s) 656
BspT107I GGYRCC 1 cut(s) 181
BsrDI GCAATG 3 cut(s) 296, 915, 1302
BsrGI TGTACA 1 cut(s) 902
BsrI ACTGG 2 cut(s) 363, 990
BssECI CCNNGG 5 cut(s) 135, 445, 780, 831, 1178
BssMI GATC 5 cut(s) 67, 493, 516, 667, 703
BssT1I CCWWGG 1 cut(s) 780
Bst2UI CCWGG 3 cut(s) 446, 833, 1180
Bst4CI ACNGT 4 cut(s) 202, 413, 547, 686
Bst6I CTCTTC 1 cut(s) 1195
BstAPI GCANNNNNTGC 2 cut(s) 1244, 1256
BstAUI TGTACA 1 cut(s) 902
BstBI TTCGAA 1 cut(s) 656
BstC8I GCNNGC 8 cut(s) 303, 323, 384, 574, 749, 753, 963, 1106
BstDEI CTNAG 2 cut(s) 478, 791
BstDSI CCRYGG 1 cut(s) 135
BstF5I GGATG 4 cut(s) 508, 880, 1082, 1094
BstFNI CGCG 2 cut(s) 137, 1313
BstKTI GATC 5 cut(s) 70, 496, 519, 670, 706
BstMAI GTCTC 2 cut(s) 536, 928
BstMBI GATC 5 cut(s) 67, 493, 516, 667, 703
BstMWI GCNNNNNNNGC 4 cut(s) 659, 1105, 1244, 1256
BstNI CCWGG 3 cut(s) 446, 833, 1180
BstNSI RCATGY 3 cut(s) 618, 857, 1215
BstPAI GACNNNNGTC 1 cut(s) 687
BstSCI CCNGG 3 cut(s) 444, 831, 1178
BstSFI CTRYAG 2 cut(s) 1245, 1257
BstSLI GKGCMC 1 cut(s) 610
BstUI CGCG 2 cut(s) 137, 1313
BstV1I GCAGC 8 cut(s) 44, 388, 556, 625, 964, 1214, 1259, 1262
BstV2I GAAGAC 1 cut(s) 829
BstX2I RGATCY 2 cut(s) 67, 493
BstXI CCANNNNNNTGG 1 cut(s) 1179
BstYI RGATCY 2 cut(s) 67, 493
BsuI GTATCC 1 cut(s) 544
BsuRI GGCC 2 cut(s) 1183, 1319
BtgI CCRYGG 1 cut(s) 135
BtgZI GCGATG 1 cut(s) 1328
BtsCI GGATG 4 cut(s) 508, 880, 1082, 1094
BtsIMutI CAGTG 3 cut(s) 244, 552, 983
BtuMI TCGCGA 1 cut(s) 1313
Cac8I GCNNGC 8 cut(s) 303, 323, 384, 574, 749, 753, 963, 1106
CaiI CAGNNNCTG 1 cut(s) 1256
Cfr13I GGNCC 3 cut(s) 31, 1182, 1318
Cfr42I CCGCGG 1 cut(s) 138
Csp6I GTAC 3 cut(s) 261, 370, 903
CviAII CATG 5 cut(s) 44, 615, 776, 854, 1212
CviQI GTAC 3 cut(s) 261, 370, 903
DdeI CTNAG 2 cut(s) 478, 791
DpnI GATC 5 cut(s) 69, 495, 518, 669, 705
DpnII GATC 5 cut(s) 67, 493, 516, 667, 703
DraI TTTAAA 1 cut(s) 390
DrdI GACNNNNNNGTC 1 cut(s) 920
DseDI GACNNNNNNGTC 1 cut(s) 920
Eam1104I CTCTTC 1 cut(s) 1195
EarI CTCTTC 1 cut(s) 1195
Eco130I CCWWGG 1 cut(s) 780
Eco24I GRGCYC 1 cut(s) 801
Eco47I GGWCC 1 cut(s) 31
Eco57I CTGAAG 2 cut(s) 220, 1095
EcoRII CCWGG 3 cut(s) 444, 831, 1178
EcoT14I CCWWGG 1 cut(s) 780
EcoT22I ATGCAT 1 cut(s) 508
EcoT38I GRGCYC 1 cut(s) 801
ErhI CCWWGG 1 cut(s) 780
Esp3I CGTCTC 1 cut(s) 928
FaeI CATG 5 cut(s) 47, 618, 779, 857, 1215
FalI AAGNNNNNCTT 2 cut(s) 1093, 1125
FaqI GGGAC 2 cut(s) 409, 813
FatI CATG 5 cut(s) 43, 614, 775, 853, 1211
FauI CCCGC 1 cut(s) 330
FbaI TGATCA 1 cut(s) 703
FblI GTMKAC 1 cut(s) 10
Fnu4HI GCNGC 9 cut(s) 58, 138, 402, 570, 639, 978, 1203, 1248, 1251
FokI GGATG 4 cut(s) 515, 887, 1069, 1101
FriOI GRGCYC 1 cut(s) 801
Fsp4HI GCNGC 9 cut(s) 58, 138, 402, 570, 639, 978, 1203, 1248, 1251
GluI GCNGC 9 cut(s) 58, 138, 402, 570, 639, 978, 1203, 1248, 1251
HaeIII GGCC 2 cut(s) 1183, 1319
HapII CCGG 1 cut(s) 1086
Hin1II CATG 5 cut(s) 47, 618, 779, 857, 1215
HindIII AAGCTT 3 cut(s) 660, 963, 1102
HinfI GANTC 3 cut(s) 80, 717, 1231
HpaII CCGG 1 cut(s) 1086
Hpy166II GTNNAC 2 cut(s) 11, 372
Hpy188I TCNGA 6 cut(s) 207, 247, 421, 621, 667, 1114
Hpy188III TCNNGA 5 cut(s) 88, 216, 1086, 1228, 1312
Hpy8I GTNNAC 2 cut(s) 11, 372
HpyAV CCTTC 7 cut(s) 170, 180, 196, 752, 780, 1073, 1119
HpyCH4III ACNGT 4 cut(s) 202, 413, 547, 686
HpyCH4IV ACGT 1 cut(s) 921
HpyF10VI GCNNNNNNNGC 4 cut(s) 659, 1105, 1244, 1256
HpyF3I CTNAG 2 cut(s) 478, 791
HpySE526I ACGT 1 cut(s) 921
Hsp92II CATG 5 cut(s) 47, 618, 779, 857, 1215
Kpn2I TCCGGA 1 cut(s) 1085
Ksp22I TGATCA 1 cut(s) 703
KspI CCGCGG 1 cut(s) 138
Kzo9I GATC 5 cut(s) 67, 493, 516, 667, 703
LmnI GCTCC 5 cut(s) 145, 172, 449, 1180, 1199
Lsp1109I GCAGC 8 cut(s) 44, 388, 556, 625, 964, 1214, 1259, 1262
LweI GCATC 7 cut(s) 493, 515, 989, 1091, 1105, 1262, 1278
MaeII ACGT 1 cut(s) 921
MaeIII GTNAC 2 cut(s) 114, 526
MalI GATC 5 cut(s) 69, 495, 518, 669, 705
MboI GATC 5 cut(s) 67, 493, 516, 667, 703
MboII GAAGA 4 cut(s) 146, 592, 829, 1182
MfeI CAATTG 1 cut(s) 270
MflI RGATCY 2 cut(s) 67, 493
MhlI GDGCHC 3 cut(s) 610, 680, 801
MluCI AATT 8 cut(s) 270, 312, 533, 560, 648, 761, 805, 995
MlyI GAGTC 1 cut(s) 726
MmeI TCCRAC 3 cut(s) 155, 309, 1051
Mph1103I ATGCAT 1 cut(s) 508
MroI TCCGGA 1 cut(s) 1085
MroXI GAANNNNTTC 1 cut(s) 652
MseI TTAA 2 cut(s) 389, 816
MslI CAYNNNNRTG 2 cut(s) 377, 1087
MspA1I CMGCKG 1 cut(s) 137
MspI CCGG 1 cut(s) 1086
MspR9I CCNGG 3 cut(s) 446, 833, 1180
MunI CAATTG 1 cut(s) 270
Mva1269I GAATGC 2 cut(s) 605, 628
MvaI CCWGG 3 cut(s) 446, 833, 1180
MvnI CGCG 2 cut(s) 137, 1313
MwoI GCNNNNNNNGC 4 cut(s) 659, 1105, 1244, 1256
NdeII GATC 5 cut(s) 67, 493, 516, 667, 703
NlaIII CATG 5 cut(s) 47, 618, 779, 857, 1215
NlaIV GGNNCC 3 cut(s) 69, 141, 183
NruI TCGCGA 1 cut(s) 1313
NsiI ATGCAT 1 cut(s) 508
NspI RCATGY 3 cut(s) 618, 857, 1215
NspV TTCGAA 1 cut(s) 656
OliI CACNNNNGTG 1 cut(s) 377
PciI ACATGT 2 cut(s) 614, 853
PctI GAATGC 2 cut(s) 605, 628
PdmI GAANNNNTTC 1 cut(s) 652
PfeI GAWTC 2 cut(s) 80, 1231
PkrI GCNGC 9 cut(s) 59, 139, 403, 571, 640, 979, 1204, 1249, 1252
PleI GAGTC 1 cut(s) 725
PpsI GAGTC 1 cut(s) 725
PscI ACATGT 2 cut(s) 614, 853
PshAI GACNNNNGTC 1 cut(s) 687
Psp6I CCWGG 3 cut(s) 444, 831, 1178
PspGI CCWGG 3 cut(s) 444, 831, 1178
PspN4I GGNNCC 3 cut(s) 69, 141, 183
PspPI GGNCC 3 cut(s) 31, 1182, 1318
PstI CTGCAG 2 cut(s) 1249, 1261
PstNI CAGNNNCTG 1 cut(s) 1256
PsuI RGATCY 2 cut(s) 67, 493
RruI TCGCGA 1 cut(s) 1313
RsaI GTAC 3 cut(s) 262, 371, 904
RsaNI GTAC 3 cut(s) 261, 370, 903
RseI CAYNNNNRTG 2 cut(s) 377, 1087
SacII CCGCGG 1 cut(s) 138
SaqAI TTAA 2 cut(s) 389, 816
SatI GCNGC 9 cut(s) 58, 138, 402, 570, 639, 978, 1203, 1248, 1251
Sau3AI GATC 5 cut(s) 67, 493, 516, 667, 703
Sau96I GGNCC 3 cut(s) 31, 1182, 1318
SchI GAGTC 1 cut(s) 726
ScrFI CCNGG 3 cut(s) 446, 833, 1180
SduI GDGCHC 3 cut(s) 610, 680, 801
SfaNI GCATC 7 cut(s) 493, 515, 989, 1091, 1105, 1262, 1278
SfcI CTRYAG 2 cut(s) 1245, 1257
Sfr303I CCGCGG 1 cut(s) 138
SfuI TTCGAA 1 cut(s) 656
SgrBI CCGCGG 1 cut(s) 138
SinI GGWCC 1 cut(s) 31
SmiMI CAYNNNNRTG 2 cut(s) 377, 1087
SmlI CTYRAG 2 cut(s) 1049, 1194
SmoI CTYRAG 2 cut(s) 1049, 1194
Sse9I AATT 8 cut(s) 270, 312, 533, 560, 648, 761, 805, 995
SsiI CCGC 4 cut(s) 60, 135, 137, 323
SspI AATATT 2 cut(s) 1012, 1122
StyD4I CCNGG 3 cut(s) 444, 831, 1178
StyI CCWWGG 1 cut(s) 780
TaaI ACNGT 4 cut(s) 202, 413, 547, 686
TaiI ACGT 1 cut(s) 924
TaqI TCGA 1 cut(s) 656
TasI AATT 8 cut(s) 270, 312, 533, 560, 648, 761, 805, 995
TatI WGTACW 2 cut(s) 369, 902
TauI GCSGC 1 cut(s) 140
TfiI GAWTC 2 cut(s) 80, 1231
Tru1I TTAA 2 cut(s) 389, 816
Tru9I TTAA 2 cut(s) 389, 816
TscAI CASTG 3 cut(s) 244, 552, 990
TseI GCWGC 8 cut(s) 57, 401, 569, 638, 977, 1202, 1247, 1250
TspDTI ATGAA 4 cut(s) 863, 937, 1007, 1291
TspGWI ACGGA 1 cut(s) 515
TspRI CASTG 3 cut(s) 244, 552, 990
VpaK11BI GGWCC 1 cut(s) 31
XapI RAATTY 2 cut(s) 533, 761
XceI RCATGY 3 cut(s) 618, 857, 1215
XmiI GTMKAC 1 cut(s) 10
XmnI GAANNNNTTC 1 cut(s) 652
Zsp2I ATGCAT 1 cut(s) 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.