Rmu_sc0006842.1_g000001

GPI-anchored protein At1g61900-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006842.1
Physical Location & Seq
Forward (+)
1636 .. 4757
3122 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006842.1_g000001.1.cds

Sequence Viewer

Length: 1317 bp
atgaaacaaagggtgtttttcaagaagaagaagaagaagccaactatgtcttgtttaaaattctccatattggtcctctgtctccatgtatcttgttccggtgccttggattatcgtaaagatcctgtcttgacaattaggcaaaaagatagcatgttacctatgatctcccctaccgcggctcctaagccgtttcttccccttcttgctccttcaccattggcgccattcacaaacattactgttccaaaaatatcaggacaatgtatgctgaacttcactgcttctgagagtttgatgagtacgaccgcaattgattgttggtctgtttttgcaccgttgctggcaaacgttatttgttgcccacagttggaagctactatcacaatcctcatcggtcagtccagtaaatacaccaatgtgcttgctttaaatgggacggctgcaaaatattgtctatccgatattaagcagattttggttagccagggtgcaaatgacacccttgcgcaaatatgctccgttcgttcaacagatctcactgatgcatcttgccccatcattgatgttactgaatttgaggagacagtggatacttccaagttggtggccgcttgtgagaagatagaccctgtgaaagaatgctgtgctcaaacatgtcagaatgccatattagaagctgctacgagaattgcttcaaaaacttctgatcttttgagcacagacggtggtcatgctgtcttacctgatcacataagtagagtcaatgactgcaaaaatattgtccttcgctggctggcaagtaaactcaatccttctcatgccaaggaagttctaaggggactctcaaattgcaagattaacaaggtttgccccctggtcttcccaaatatgaaacatgttgcactcggctgtggggatgagataagcaaccagacagcttgctgtacggccatggacagctatgtttcccacttgcaaaagcagagtttcataaccaacttgcaagctttggattgtgctgcatcactgggaatgaagttaagaaaatcaaatattaccaaagatgtgtacagcctatgtcatataagcctcaaggatttctcccttcaaggggtcagcttcctttgtgatctgaatgataacattccagctccctggcccacctcttctcaaggagcagcttcaacatgcagtaaaggtgtcaagattcctgcacttcctgcagcagcatcagcagaaaggggcaattacaacgatgttgtgatgctttctctgctcgttgcttttgcaatggcccttttgatgttcatgtaa
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

438

Amino Acids

47.24

Weight (kDa)

8.51

Isoelectric Point (pI)

49.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 510
AccB1I GGYRCC 2 cut(s) 101, 223
AccII CGCG 1 cut(s) 179
AciI CCGC 4 cut(s) 177, 179, 309, 612
AclI AACGTT 1 cut(s) 351
AclWI GGATC 1 cut(s) 116
AcoI YGGCCR 2 cut(s) 609, 951
AcsI RAATTY 2 cut(s) 59, 575
AcyI GRCGYC 1 cut(s) 224
AfaI GTAC 3 cut(s) 304, 949, 1073
AfiI CCNNNNNNNGG 4 cut(s) 178, 370, 1113, 1114
AflIII ACRYGT 2 cut(s) 656, 898
AgsI TTSAA 5 cut(s) 22, 531, 699, 1112, 1188
AjnI CCWGG 3 cut(s) 486, 876, 1157
AleI CACNNNNGTG 1 cut(s) 419
AluBI AGCT 8 cut(s) 377, 680, 941, 963, 1010, 1122, 1154, 1184
AluI AGCT 8 cut(s) 377, 680, 941, 963, 1010, 1122, 1154, 1184
Alw21I GWGCWC 2 cut(s) 652, 722
Alw26I GTCTC 2 cut(s) 86, 578
AlwI GGATC 1 cut(s) 116
AoxI GGCC 4 cut(s) 609, 951, 1160, 1296
ApeKI GCWGC 6 cut(s) 443, 680, 1022, 1181, 1226, 1229
ApoI RAATTY 2 cut(s) 59, 575
ArsI GACNNNNNNTTYG 2 cut(s) 768, 800
Asp700I GAANNNNTTC 1 cut(s) 694
AspLEI GCGC 2 cut(s) 226, 511
AspS9I GGNCC 3 cut(s) 73, 1161, 1297
AsuHPI GGTGA 1 cut(s) 207
AvaII GGWCC 1 cut(s) 73
BanI GGYRCC 2 cut(s) 101, 223
BbsI GAAGAC 1 cut(s) 874
Bbv12I GWGCWC 2 cut(s) 652, 722
BbvI GCAGC 6 cut(s) 430, 667, 1009, 1193, 1238, 1241
BccI CCATC 1 cut(s) 566
BceAI ACGGC 3 cut(s) 175, 456, 966
BciT130I CCWGG 3 cut(s) 488, 878, 1159
BciVI GTATCC 1 cut(s) 586
BclI TGATCA 1 cut(s) 748
BcoDI GTCTC 2 cut(s) 86, 578
BfmI CTRYAG 1 cut(s) 1224
BfoI RGCGCY 1 cut(s) 227
BfuI GTATCC 1 cut(s) 586
BglII AGATCT 1 cut(s) 535
BisI GCNGC 8 cut(s) 180, 444, 612, 681, 1023, 1182, 1227, 1230
BlsI GCNGC 8 cut(s) 181, 445, 613, 682, 1024, 1183, 1228, 1231
Bme1390I CCNGG 3 cut(s) 488, 878, 1159
Bme18I GGWCC 1 cut(s) 73
BmgT120I GGNCC 3 cut(s) 73, 1161, 1297
BmiI GGNNCC 3 cut(s) 103, 183, 225
BmrFI CCNGG 3 cut(s) 488, 878, 1159
BmrI ACTGGG 1 cut(s) 1040
BmsI GCATC 5 cut(s) 535, 557, 1034, 1241, 1257
BmuI ACTGGG 1 cut(s) 1040
BoxI GACNNNNGTC 1 cut(s) 729
BpiI GAAGAC 1 cut(s) 874
Bpu10I CCTNAGC 1 cut(s) 186
BpuEI CTTGAG 2 cut(s) 1079, 1158
BsaHI GRCGYC 1 cut(s) 224
BsaJI CCNNGG 7 cut(s) 105, 177, 487, 825, 876, 954, 1157
BsaWI WCCGGW 1 cut(s) 98
BsaXI ACNNNNNCTCC 2 cut(s) 166, 196
Bsc4I CCNNNNNNNGG 4 cut(s) 178, 370, 1113, 1114
Bse1I ACTGG 2 cut(s) 405, 1035
Bse3DI GCAATG 1 cut(s) 1299
BseBI CCWGG 3 cut(s) 488, 878, 1159
BseDI CCNNGG 7 cut(s) 105, 177, 487, 825, 876, 954, 1157
BseGI GGATG 1 cut(s) 925
BseLI CCNNNNNNNGG 4 cut(s) 178, 370, 1113, 1114
BseMI GCAATG 1 cut(s) 1299
BseMII CTCAG 1 cut(s) 279
BseNI ACTGG 2 cut(s) 405, 1035
BseRI GAGGAG 1 cut(s) 596
BseXI GCAGC 6 cut(s) 430, 667, 1009, 1193, 1238, 1241
BsgI GTGCAG 1 cut(s) 1200
Bsh1236I CGCG 1 cut(s) 179
Bsh1285I CGRYCG 1 cut(s) 309
BshFI GGCC 4 cut(s) 611, 953, 1162, 1298
BshNI GGYRCC 2 cut(s) 101, 223
BsiEI CGRYCG 1 cut(s) 309
BsiHKAI GWGCWC 2 cut(s) 652, 722
BsiSI CCGG 1 cut(s) 99
BslFI GGGAC 2 cut(s) 451, 855
BslI CCNNNNNNNGG 4 cut(s) 178, 370, 1113, 1114
BsmAI GTCTC 2 cut(s) 86, 578
BsmFI GGGAC 2 cut(s) 451, 855
BsmI GAATGC 2 cut(s) 647, 670
BsnI GGCC 4 cut(s) 611, 953, 1162, 1298
Bsp1286I GDGCHC 2 cut(s) 652, 722
Bsp1407I TGTACA 1 cut(s) 1071
Bsp143I GATC 6 cut(s) 121, 165, 535, 709, 748, 1132
Bsp19I CCATGG 1 cut(s) 954
BspACI CCGC 4 cut(s) 177, 179, 309, 612
BspANI GGCC 4 cut(s) 611, 953, 1162, 1298
BspCNI CTCAG 1 cut(s) 280
BspFNI CGCG 1 cut(s) 179
BspLI GGNNCC 3 cut(s) 103, 183, 225
BspMAI CTGCAG 1 cut(s) 1228
BspPI GGATC 1 cut(s) 116
BspT107I GGYRCC 2 cut(s) 101, 223
BsrDI GCAATG 1 cut(s) 1299
BsrGI TGTACA 1 cut(s) 1071
BsrI ACTGG 2 cut(s) 405, 1035
BssECI CCNNGG 7 cut(s) 105, 177, 487, 825, 876, 954, 1157
BssMI GATC 6 cut(s) 121, 165, 535, 709, 748, 1132
BssNI GRCGYC 1 cut(s) 224
BssT1I CCWWGG 3 cut(s) 105, 825, 954
Bst2UI CCWGG 3 cut(s) 488, 878, 1159
Bst4CI ACNGT 5 cut(s) 244, 339, 369, 589, 728
Bst6I CTCTTC 1 cut(s) 1174
BstACI GRCGYC 1 cut(s) 224
BstAPI GCANNNNNTGC 1 cut(s) 1223
BstAUI TGTACA 1 cut(s) 1071
BstC8I GCNNGC 6 cut(s) 345, 426, 794, 798, 943, 1008
BstDEI CTNAG 3 cut(s) 186, 288, 836
BstDSI CCRYGG 2 cut(s) 177, 954
BstF5I GGATG 1 cut(s) 925
BstFNI CGCG 1 cut(s) 179
BstH2I RGCGCY 1 cut(s) 227
BstHHI GCGC 2 cut(s) 226, 511
BstKTI GATC 6 cut(s) 124, 168, 538, 712, 751, 1135
BstMAI GTCTC 2 cut(s) 86, 578
BstMBI GATC 6 cut(s) 121, 165, 535, 709, 748, 1132
BstMCI CGRYCG 1 cut(s) 309
BstMWI GCNNNNNNNGC 3 cut(s) 1223, 1235, 1276
BstNI CCWGG 3 cut(s) 488, 878, 1159
BstNSI RCATGY 4 cut(s) 157, 660, 902, 1194
BstPAI GACNNNNGTC 1 cut(s) 729
BstSCI CCNGG 3 cut(s) 486, 876, 1157
BstSFI CTRYAG 1 cut(s) 1224
BstUI CGCG 1 cut(s) 179
BstV1I GCAGC 6 cut(s) 430, 667, 1009, 1193, 1238, 1241
BstV2I GAAGAC 1 cut(s) 874
BstX2I RGATCY 2 cut(s) 121, 535
BstXI CCANNNNNNTGG 2 cut(s) 607, 1158
BstYI RGATCY 2 cut(s) 121, 535
BsuI GTATCC 1 cut(s) 586
BsuRI GGCC 4 cut(s) 611, 953, 1162, 1298
BtgI CCRYGG 2 cut(s) 177, 954
BtsCI GGATG 1 cut(s) 925
BtsI GCAGTG 1 cut(s) 279
BtsIMutI CAGTG 4 cut(s) 279, 540, 594, 1028
Cac8I GCNNGC 6 cut(s) 345, 426, 794, 798, 943, 1008
CfoI GCGC 2 cut(s) 226, 511
Cfr13I GGNCC 3 cut(s) 73, 1161, 1297
Cfr42I CCGCGG 1 cut(s) 180
Csp6I GTAC 3 cut(s) 303, 948, 1072
CviAII CATG 9 cut(s) 86, 154, 657, 734, 821, 899, 955, 1191, 1312
CviQI GTAC 3 cut(s) 303, 948, 1072
DdeI CTNAG 3 cut(s) 186, 288, 836
DinI GGCGCC 1 cut(s) 225
DpnI GATC 6 cut(s) 123, 167, 537, 711, 750, 1134
DpnII GATC 6 cut(s) 121, 165, 535, 709, 748, 1132
DraI TTTAAA 2 cut(s) 57, 432
EaeI YGGCCR 2 cut(s) 609, 951
Eam1104I CTCTTC 1 cut(s) 1174
EarI CTCTTC 1 cut(s) 1174
Eco130I CCWWGG 3 cut(s) 105, 825, 954
Eco47I GGWCC 1 cut(s) 73
EcoRII CCWGG 3 cut(s) 486, 876, 1157
EcoT14I CCWWGG 3 cut(s) 105, 825, 954
EcoT22I ATGCAT 1 cut(s) 550
EgeI GGCGCC 1 cut(s) 225
EheI GGCGCC 1 cut(s) 225
ErhI CCWWGG 3 cut(s) 105, 825, 954
FaeI CATG 9 cut(s) 89, 157, 660, 737, 824, 902, 958, 1194, 1315
FaqI GGGAC 2 cut(s) 451, 855
FatI CATG 9 cut(s) 85, 153, 656, 733, 820, 898, 954, 1190, 1311
FbaI TGATCA 1 cut(s) 748
Fnu4HI GCNGC 8 cut(s) 180, 444, 612, 681, 1023, 1182, 1227, 1230
FokI GGATG 1 cut(s) 932
Fsp4HI GCNGC 8 cut(s) 180, 444, 612, 681, 1023, 1182, 1227, 1230
FspI TGCGCA 1 cut(s) 510
GlaI GCGC 2 cut(s) 225, 510
GluI GCNGC 8 cut(s) 180, 444, 612, 681, 1023, 1182, 1227, 1230
HaeII RGCGCY 1 cut(s) 227
HaeIII GGCC 4 cut(s) 611, 953, 1162, 1298
HapII CCGG 1 cut(s) 99
HhaI GCGC 2 cut(s) 226, 511
Hin1I GRCGYC 1 cut(s) 224
Hin1II CATG 9 cut(s) 89, 157, 660, 737, 824, 902, 958, 1194, 1315
Hin6I GCGC 2 cut(s) 224, 509
HinP1I GCGC 2 cut(s) 224, 509
HindIII AAGCTT 1 cut(s) 1008
HinfI GANTC 3 cut(s) 762, 843, 1210
HpaII CCGG 1 cut(s) 99
HphI GGTGA 1 cut(s) 207
Hpy166II GTNNAC 2 cut(s) 806, 1072
Hpy188I TCNGA 5 cut(s) 289, 463, 663, 709, 1137
Hpy188III TCNNGA 4 cut(s) 22, 130, 258, 1207
Hpy8I GTNNAC 2 cut(s) 806, 1072
HpyAV CCTTC 5 cut(s) 212, 222, 797, 825, 1118
HpyCH4III ACNGT 5 cut(s) 244, 339, 369, 589, 728
HpyCH4IV ACGT 1 cut(s) 351
HpyF10VI GCNNNNNNNGC 3 cut(s) 1223, 1235, 1276
HpyF3I CTNAG 3 cut(s) 186, 288, 836
HpySE526I ACGT 1 cut(s) 351
Hsp92I GRCGYC 1 cut(s) 224
Hsp92II CATG 9 cut(s) 89, 157, 660, 737, 824, 902, 958, 1194, 1315
HspAI GCGC 2 cut(s) 224, 509
KasI GGCGCC 1 cut(s) 223
Ksp22I TGATCA 1 cut(s) 748
KspI CCGCGG 1 cut(s) 180
Kzo9I GATC 6 cut(s) 121, 165, 535, 709, 748, 1132
LmnI GCTCC 5 cut(s) 187, 214, 524, 1159, 1178
Lsp1109I GCAGC 6 cut(s) 430, 667, 1009, 1193, 1238, 1241
LweI GCATC 5 cut(s) 535, 557, 1034, 1241, 1257
MaeII ACGT 1 cut(s) 351
MaeIII GTNAC 2 cut(s) 156, 568
MalI GATC 6 cut(s) 123, 167, 537, 711, 750, 1134
MboI GATC 6 cut(s) 121, 165, 535, 709, 748, 1132
MboII GAAGA 8 cut(s) 37, 40, 43, 46, 188, 634, 874, 1161
MfeI CAATTG 1 cut(s) 312
MflI RGATCY 2 cut(s) 121, 535
MhlI GDGCHC 2 cut(s) 652, 722
MluCI AATT 7 cut(s) 59, 135, 312, 575, 690, 850, 1249
Mly113I GGCGCC 1 cut(s) 224
MlyI GAGTC 2 cut(s) 771, 837
MmeI TCCRAC 1 cut(s) 351
MnlI CCTC 5 cut(s) 86, 401, 574, 1103, 1177
Mph1103I ATGCAT 1 cut(s) 550
MroXI GAANNNNTTC 1 cut(s) 694
MseI TTAA 5 cut(s) 56, 431, 468, 861, 1043
MslI CAYNNNNRTG 1 cut(s) 419
MspA1I CMGCKG 1 cut(s) 179
MspI CCGG 1 cut(s) 99
MspR9I CCNGG 3 cut(s) 488, 878, 1159
MunI CAATTG 1 cut(s) 312
Mva1269I GAATGC 2 cut(s) 647, 670
MvaI CCWGG 3 cut(s) 488, 878, 1159
MvnI CGCG 1 cut(s) 179
MwoI GCNNNNNNNGC 3 cut(s) 1223, 1235, 1276
NarI GGCGCC 1 cut(s) 224
NcoI CCATGG 1 cut(s) 954
NdeII GATC 6 cut(s) 121, 165, 535, 709, 748, 1132
NlaIII CATG 9 cut(s) 89, 157, 660, 737, 824, 902, 958, 1194, 1315
NlaIV GGNNCC 3 cut(s) 103, 183, 225
NmeAIII GCCGAG 1 cut(s) 888
NsbI TGCGCA 1 cut(s) 510
NsiI ATGCAT 1 cut(s) 550
NspI RCATGY 4 cut(s) 157, 660, 902, 1194
OliI CACNNNNGTG 1 cut(s) 419
PciI ACATGT 2 cut(s) 656, 898
PctI GAATGC 2 cut(s) 647, 670
PdmI GAANNNNTTC 1 cut(s) 694
PfeI GAWTC 1 cut(s) 1210
PkrI GCNGC 8 cut(s) 181, 445, 613, 682, 1024, 1183, 1228, 1231
PleI GAGTC 2 cut(s) 770, 837
PluTI GGCGCC 1 cut(s) 227
PpsI GAGTC 2 cut(s) 770, 837
PscI ACATGT 2 cut(s) 656, 898
PshAI GACNNNNGTC 1 cut(s) 729
Psp1406I AACGTT 1 cut(s) 351
Psp6I CCWGG 3 cut(s) 486, 876, 1157
PspGI CCWGG 3 cut(s) 486, 876, 1157
PspN4I GGNNCC 3 cut(s) 103, 183, 225
PspPI GGNCC 3 cut(s) 73, 1161, 1297
PstI CTGCAG 1 cut(s) 1228
PsuI RGATCY 2 cut(s) 121, 535
RsaI GTAC 3 cut(s) 304, 949, 1073
RsaNI GTAC 3 cut(s) 303, 948, 1072
RseI CAYNNNNRTG 1 cut(s) 419
SacII CCGCGG 1 cut(s) 180
SaqAI TTAA 5 cut(s) 56, 431, 468, 861, 1043
SatI GCNGC 8 cut(s) 180, 444, 612, 681, 1023, 1182, 1227, 1230
Sau3AI GATC 6 cut(s) 121, 165, 535, 709, 748, 1132
Sau96I GGNCC 3 cut(s) 73, 1161, 1297
SchI GAGTC 2 cut(s) 771, 837
ScrFI CCNGG 3 cut(s) 488, 878, 1159
SduI GDGCHC 2 cut(s) 652, 722
SfaNI GCATC 5 cut(s) 535, 557, 1034, 1241, 1257
SfcI CTRYAG 1 cut(s) 1224
SfoI GGCGCC 1 cut(s) 225
Sfr303I CCGCGG 1 cut(s) 180
SgrBI CCGCGG 1 cut(s) 180
SinI GGWCC 1 cut(s) 73
SmiMI CAYNNNNRTG 1 cut(s) 419
SmlI CTYRAG 2 cut(s) 1094, 1173
SmoI CTYRAG 2 cut(s) 1094, 1173
Sse9I AATT 7 cut(s) 59, 135, 312, 575, 690, 850, 1249
SsiI CCGC 4 cut(s) 177, 179, 309, 612
SspDI GGCGCC 1 cut(s) 223
SspI AATATT 3 cut(s) 452, 781, 1057
StyD4I CCNGG 3 cut(s) 486, 876, 1157
StyI CCWWGG 3 cut(s) 105, 825, 954
TaaI ACNGT 5 cut(s) 244, 339, 369, 589, 728
TaiI ACGT 1 cut(s) 354
TaqII GACCGA 1 cut(s) 386
TasI AATT 7 cut(s) 59, 135, 312, 575, 690, 850, 1249
TatI WGTACW 1 cut(s) 1071
TauI GCSGC 2 cut(s) 182, 614
TfiI GAWTC 1 cut(s) 1210
Tru1I TTAA 5 cut(s) 56, 431, 468, 861, 1043
Tru9I TTAA 5 cut(s) 56, 431, 468, 861, 1043
TscAI CASTG 4 cut(s) 286, 547, 594, 1035
TseI GCWGC 6 cut(s) 443, 680, 1022, 1181, 1226, 1229
TspDTI ATGAA 5 cut(s) 17, 908, 982, 1052, 1300
TspGWI ACGGA 1 cut(s) 511
TspRI CASTG 4 cut(s) 286, 547, 594, 1035
VpaK11BI GGWCC 1 cut(s) 73
XapI RAATTY 2 cut(s) 59, 575
XceI RCATGY 4 cut(s) 157, 660, 902, 1194
XmnI GAANNNNTTC 1 cut(s) 694
Zsp2I ATGCAT 1 cut(s) 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.