Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0007201

Physical Location & Seq

Genomic Coordinates Forward (+)

1994576 .. 1998667

Gene Structure 4092 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG028700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGTTACCTATGATCTCCCCTACCGCGGCTCCTAAGCCGTTTCTTCCCCTTCTTGCTCCTTCACCATTGGCGCCATTCACAAACATTACTGTTCCAAAAATATCAGGACAATGTATGCTGAACTTCACTGCTTCTGAGAGTTTGATGAGTACGACCGCAATTGATTGTTGGTCTGTTTTTGCACCATTGCTGGCAAACGTTATTTGTTGCCCACAGTTGGAAGCTACTATCACAATCCTCATCGGTCAGTCCAGTAAATACACCAATGTGCTTGCTTTAAATGGGACGGCTGCAAAATATTGTCTATCCGATATTAAGCAGATTTTGGTTAGCCAGGGTGCAAATGACACCCTTGCGCAAATATGCTCAGTTCGTTCAACAGATCTCACTGATGCATCTTGCCCCATCATTGATGTTACTGAATTTGAGGAGACAGTGGATACTTCCAAGTTGGTGGCCGCTTGTGAGAAGATAGACCCTGTGAAAGAATGCTGTGCTCAAACATGTCAGAATGCCATATTAGAAGCTGCTACGAGAATTGCTTCAAAAACTTCTGATCTTTTGAGCACAGACGGTGGTCATGCTGTCTTACCTGATCACATAAGTAGAGTCAATGACTGCAAAAATATTGTCCTTCGCTGGCTGGCAAGTAAACTCAATCCTTCTCATGCCAAGGAAGTTCTAAGGGGACTCTCAAATTGCAAGATTAACAAGGTTTGCCCCCTGGTCTTCCCAAATATGAAACATGTTGCACTCGGCTGTGGGGATGAGATAAGCAACCAGACAGCTTGCTGTACGGCCATGGACAGCTATGTTTCCCACTTGCAAAAGCAGAGTTTCATAACCAACTTGCAAGCTTTGGATTGTGCTGCATCACTGGGAATGAAGTTAAGAAAATCCAATATTACCAAAGATGTGTACAGCCTATGTCATATAAGCCTCAAGGATTTCTCCCTTCAAGGTTACTGCTTTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

325

Amino Acids

34.97

Weight (kDa)

6.57

Isoelectric Point (pI)

51.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPARK	PF19160	35 - 183	2.8e-23	SPARK
At1g61900	PF26584	238 - 311	2.7e-37	At1g61900-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61900 AT1G61900 AT1G61900
fragaria_vesca	FvH4_3g02240 FvH4_3g02240 FvH4_3g02240
malus_domestica	MD10G1320400.v1.1
prunus_persica	Prupe.4G021700_v2.0.a1 Prupe.4G021700_v2.0.a1
pyrus_communis	pycom05g31400 pycom10g27110
rosa_chinensis	RchiOBHm_Chr5g0003311
rosa_laevigata	RLG00000031123
rosa_multiflora	Rmu_sc0006842.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072660
rosa_rugosa	Rorug04G0402500 Rorug04G0402500 Rorug04G0402600
rosa_samantha	Rh5AG028700 Rh5BG028800 Rh5CG031100 Rh5DG029300
rosa_wichuraiana	Rw0G014050 Rw5G002670 Rw5G002720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	357
AccB1I	GGYRCC	1 cut(s)	70
AccII	CGCG	1 cut(s)	26
AciI	CCGC	4 cut(s)	24, 26, 156, 459
AclI	AACGTT	1 cut(s)	198
AcoI	YGGCCR	2 cut(s)	456, 798
AcsI	RAATTY	1 cut(s)	422
AcyI	GRCGYC	1 cut(s)	71
AfaI	GTAC	3 cut(s)	151, 796, 920
AfiI	CCNNNNNNNGG	2 cut(s)	25, 217
AflIII	ACRYGT	2 cut(s)	503, 745
AgsI	TTSAA	3 cut(s)	378, 546, 959
AjnI	CCWGG	2 cut(s)	333, 723
AleI	CACNNNNGTG	1 cut(s)	266
AluBI	AGCT	5 cut(s)	224, 527, 788, 810, 857
AluI	AGCT	5 cut(s)	224, 527, 788, 810, 857
Alw21I	GWGCWC	2 cut(s)	499, 569
Alw26I	GTCTC	1 cut(s)	425
AoxI	GGCC	2 cut(s)	456, 798
ApeKI	GCWGC	3 cut(s)	290, 527, 869
ApoI	RAATTY	1 cut(s)	422
ArsI	GACNNNNNNTTYG	2 cut(s)	615, 647
Asp700I	GAANNNNTTC	1 cut(s)	541
AspLEI	GCGC	2 cut(s)	73, 358
AsuHPI	GGTGA	1 cut(s)	54
BanI	GGYRCC	1 cut(s)	70
BbsI	GAAGAC	1 cut(s)	721
Bbv12I	GWGCWC	2 cut(s)	499, 569
BbvI	GCAGC	3 cut(s)	277, 514, 856
BccI	CCATC	1 cut(s)	413
BceAI	ACGGC	3 cut(s)	22, 303, 813
BciT130I	CCWGG	2 cut(s)	335, 725
BciVI	GTATCC	1 cut(s)	433
BclI	TGATCA	1 cut(s)	595
BcoDI	GTCTC	1 cut(s)	425
BfoI	RGCGCY	1 cut(s)	74
BfuI	GTATCC	1 cut(s)	433
BglII	AGATCT	1 cut(s)	382
BisI	GCNGC	5 cut(s)	27, 291, 459, 528, 870
BlsI	GCNGC	5 cut(s)	28, 292, 460, 529, 871
Bme1390I	CCNGG	2 cut(s)	335, 725
BmiI	GGNNCC	2 cut(s)	30, 72
BmrFI	CCNGG	2 cut(s)	335, 725
BmrI	ACTGGG	1 cut(s)	887
BmsI	GCATC	3 cut(s)	382, 404, 881
BmuI	ACTGGG	1 cut(s)	887
BoxI	GACNNNNGTC	1 cut(s)	576
BpiI	GAAGAC	1 cut(s)	721
Bpu10I	CCTNAGC	1 cut(s)	33
BpuEI	CTTGAG	1 cut(s)	926
BsaHI	GRCGYC	1 cut(s)	71
BsaJI	CCNNGG	5 cut(s)	24, 334, 672, 723, 801
BsaXI	ACNNNNNCTCC	2 cut(s)	13, 43
Bsc4I	CCNNNNNNNGG	2 cut(s)	25, 217
Bse1I	ACTGG	2 cut(s)	252, 882
Bse3DI	GCAATG	1 cut(s)	185
BseBI	CCWGG	2 cut(s)	335, 725
BseDI	CCNNGG	5 cut(s)	24, 334, 672, 723, 801
BseGI	GGATG	1 cut(s)	772
BseLI	CCNNNNNNNGG	2 cut(s)	25, 217
BseMI	GCAATG	1 cut(s)	185
BseMII	CTCAG	2 cut(s)	126, 381
BseNI	ACTGG	2 cut(s)	252, 882
BseRI	GAGGAG	1 cut(s)	443
BseXI	GCAGC	3 cut(s)	277, 514, 856
Bsh1236I	CGCG	1 cut(s)	26
Bsh1285I	CGRYCG	1 cut(s)	156
BshFI	GGCC	2 cut(s)	458, 800
BshNI	GGYRCC	1 cut(s)	70
BsiEI	CGRYCG	1 cut(s)	156
BsiHKAI	GWGCWC	2 cut(s)	499, 569
BslFI	GGGAC	2 cut(s)	298, 702
BslI	CCNNNNNNNGG	2 cut(s)	25, 217
BsmAI	GTCTC	1 cut(s)	425
BsmFI	GGGAC	2 cut(s)	298, 702
BsmI	GAATGC	2 cut(s)	494, 517
BsnI	GGCC	2 cut(s)	458, 800
Bsp1286I	GDGCHC	2 cut(s)	499, 569
Bsp1407I	TGTACA	1 cut(s)	918
Bsp143I	GATC	4 cut(s)	12, 382, 556, 595
Bsp19I	CCATGG	1 cut(s)	801
BspACI	CCGC	4 cut(s)	24, 26, 156, 459
BspANI	GGCC	2 cut(s)	458, 800
BspCNI	CTCAG	2 cut(s)	127, 380
BspFNI	CGCG	1 cut(s)	26
BspLI	GGNNCC	2 cut(s)	30, 72
BspT107I	GGYRCC	1 cut(s)	70
BsrDI	GCAATG	1 cut(s)	185
BsrGI	TGTACA	1 cut(s)	918
BsrI	ACTGG	2 cut(s)	252, 882
BssECI	CCNNGG	5 cut(s)	24, 334, 672, 723, 801
BssMI	GATC	4 cut(s)	12, 382, 556, 595
BssNI	GRCGYC	1 cut(s)	71
BssT1I	CCWWGG	2 cut(s)	672, 801
Bst2UI	CCWGG	2 cut(s)	335, 725
Bst4CI	ACNGT	4 cut(s)	91, 216, 436, 575
BstACI	GRCGYC	1 cut(s)	71
BstAUI	TGTACA	1 cut(s)	918
BstC8I	GCNNGC	6 cut(s)	192, 273, 641, 645, 790, 855
BstDEI	CTNAG	4 cut(s)	33, 135, 367, 683
BstDSI	CCRYGG	2 cut(s)	24, 801
BstF5I	GGATG	1 cut(s)	772
BstFNI	CGCG	1 cut(s)	26
BstH2I	RGCGCY	1 cut(s)	74
BstHHI	GCGC	2 cut(s)	73, 358
BstKTI	GATC	4 cut(s)	15, 385, 559, 598
BstMAI	GTCTC	1 cut(s)	425
BstMBI	GATC	4 cut(s)	12, 382, 556, 595
BstMCI	CGRYCG	1 cut(s)	156
BstNI	CCWGG	2 cut(s)	335, 725
BstNSI	RCATGY	2 cut(s)	507, 749
BstPAI	GACNNNNGTC	1 cut(s)	576
BstSCI	CCNGG	2 cut(s)	333, 723
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	3 cut(s)	277, 514, 856
BstV2I	GAAGAC	1 cut(s)	721
BstX2I	RGATCY	1 cut(s)	382
BstXI	CCANNNNNNTGG	1 cut(s)	454
BstYI	RGATCY	1 cut(s)	382
BsuI	GTATCC	1 cut(s)	433
BsuRI	GGCC	2 cut(s)	458, 800
BtgI	CCRYGG	2 cut(s)	24, 801
BtsCI	GGATG	1 cut(s)	772
BtsI	GCAGTG	1 cut(s)	126
BtsIMutI	CAGTG	4 cut(s)	126, 387, 441, 875
Cac8I	GCNNGC	6 cut(s)	192, 273, 641, 645, 790, 855
CfoI	GCGC	2 cut(s)	73, 358
Cfr42I	CCGCGG	1 cut(s)	27
Csp6I	GTAC	3 cut(s)	150, 795, 919
CviAII	CATG	5 cut(s)	504, 581, 668, 746, 802
CviQI	GTAC	3 cut(s)	150, 795, 919
DdeI	CTNAG	4 cut(s)	33, 135, 367, 683
DinI	GGCGCC	1 cut(s)	72
DpnI	GATC	4 cut(s)	14, 384, 558, 597
DpnII	GATC	4 cut(s)	12, 382, 556, 595
DraI	TTTAAA	1 cut(s)	279
EaeI	YGGCCR	2 cut(s)	456, 798
Eco130I	CCWWGG	2 cut(s)	672, 801
EcoRII	CCWGG	2 cut(s)	333, 723
EcoT14I	CCWWGG	2 cut(s)	672, 801
EcoT22I	ATGCAT	1 cut(s)	397
EgeI	GGCGCC	1 cut(s)	72
EheI	GGCGCC	1 cut(s)	72
ErhI	CCWWGG	2 cut(s)	672, 801
FaeI	CATG	5 cut(s)	507, 584, 671, 749, 805
FaqI	GGGAC	2 cut(s)	298, 702
FatI	CATG	5 cut(s)	503, 580, 667, 745, 801
FbaI	TGATCA	1 cut(s)	595
Fnu4HI	GCNGC	5 cut(s)	27, 291, 459, 528, 870
FokI	GGATG	1 cut(s)	779
Fsp4HI	GCNGC	5 cut(s)	27, 291, 459, 528, 870
FspI	TGCGCA	1 cut(s)	357
GlaI	GCGC	2 cut(s)	72, 357
GluI	GCNGC	5 cut(s)	27, 291, 459, 528, 870
HaeII	RGCGCY	1 cut(s)	74
HaeIII	GGCC	2 cut(s)	458, 800
HhaI	GCGC	2 cut(s)	73, 358
Hin1I	GRCGYC	1 cut(s)	71
Hin1II	CATG	5 cut(s)	507, 584, 671, 749, 805
Hin6I	GCGC	2 cut(s)	71, 356
HinP1I	GCGC	2 cut(s)	71, 356
HindIII	AAGCTT	1 cut(s)	855
HinfI	GANTC	2 cut(s)	609, 690
HphI	GGTGA	1 cut(s)	54
Hpy166II	GTNNAC	2 cut(s)	653, 919
Hpy188I	TCNGA	4 cut(s)	136, 310, 510, 556
Hpy188III	TCNNGA	1 cut(s)	105
Hpy8I	GTNNAC	2 cut(s)	653, 919
HpyAV	CCTTC	5 cut(s)	59, 69, 644, 672, 965
HpyCH4III	ACNGT	4 cut(s)	91, 216, 436, 575
HpyCH4IV	ACGT	1 cut(s)	198
HpyF3I	CTNAG	4 cut(s)	33, 135, 367, 683
HpySE526I	ACGT	1 cut(s)	198
Hsp92I	GRCGYC	1 cut(s)	71
Hsp92II	CATG	5 cut(s)	507, 584, 671, 749, 805
HspAI	GCGC	2 cut(s)	71, 356
KasI	GGCGCC	1 cut(s)	70
Ksp22I	TGATCA	1 cut(s)	595
KspI	CCGCGG	1 cut(s)	27
Kzo9I	GATC	4 cut(s)	12, 382, 556, 595
LmnI	GCTCC	2 cut(s)	34, 61
Lsp1109I	GCAGC	3 cut(s)	277, 514, 856
LweI	GCATC	3 cut(s)	382, 404, 881
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	3 cut(s)	3, 415, 962
MalI	GATC	4 cut(s)	14, 384, 558, 597
MboI	GATC	4 cut(s)	12, 382, 556, 595
MboII	GAAGA	3 cut(s)	35, 481, 721
MfeI	CAATTG	1 cut(s)	159
MflI	RGATCY	1 cut(s)	382
MhlI	GDGCHC	2 cut(s)	499, 569
MluCI	AATT	4 cut(s)	159, 422, 537, 697
Mly113I	GGCGCC	1 cut(s)	71
MlyI	GAGTC	2 cut(s)	618, 684
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	3 cut(s)	248, 421, 950
Mph1103I	ATGCAT	1 cut(s)	397
MroXI	GAANNNNTTC	1 cut(s)	541
MseI	TTAA	4 cut(s)	278, 315, 708, 890
MslI	CAYNNNNRTG	1 cut(s)	266
MspA1I	CMGCKG	1 cut(s)	26
MspR9I	CCNGG	2 cut(s)	335, 725
MunI	CAATTG	1 cut(s)	159
Mva1269I	GAATGC	2 cut(s)	494, 517
MvaI	CCWGG	2 cut(s)	335, 725
MvnI	CGCG	1 cut(s)	26
NarI	GGCGCC	1 cut(s)	71
NcoI	CCATGG	1 cut(s)	801
NdeII	GATC	4 cut(s)	12, 382, 556, 595
NlaIII	CATG	5 cut(s)	507, 584, 671, 749, 805
NlaIV	GGNNCC	2 cut(s)	30, 72
NmeAIII	GCCGAG	1 cut(s)	735
NsbI	TGCGCA	1 cut(s)	357
NsiI	ATGCAT	1 cut(s)	397
NspI	RCATGY	2 cut(s)	507, 749
OliI	CACNNNNGTG	1 cut(s)	266
PciI	ACATGT	2 cut(s)	503, 745
PctI	GAATGC	2 cut(s)	494, 517
PdmI	GAANNNNTTC	1 cut(s)	541
PkrI	GCNGC	5 cut(s)	28, 292, 460, 529, 871
PleI	GAGTC	2 cut(s)	617, 684
PluTI	GGCGCC	1 cut(s)	74
PpsI	GAGTC	2 cut(s)	617, 684
PscI	ACATGT	2 cut(s)	503, 745
PshAI	GACNNNNGTC	1 cut(s)	576
Psp1406I	AACGTT	1 cut(s)	198
Psp6I	CCWGG	2 cut(s)	333, 723
PspGI	CCWGG	2 cut(s)	333, 723
PspN4I	GGNNCC	2 cut(s)	30, 72
PsuI	RGATCY	1 cut(s)	382
RsaI	GTAC	3 cut(s)	151, 796, 920
RsaNI	GTAC	3 cut(s)	150, 795, 919
RseI	CAYNNNNRTG	1 cut(s)	266
SacII	CCGCGG	1 cut(s)	27
SaqAI	TTAA	4 cut(s)	278, 315, 708, 890
SatI	GCNGC	5 cut(s)	27, 291, 459, 528, 870
Sau3AI	GATC	4 cut(s)	12, 382, 556, 595
SchI	GAGTC	2 cut(s)	618, 684
ScrFI	CCNGG	2 cut(s)	335, 725
SduI	GDGCHC	2 cut(s)	499, 569
SfaNI	GCATC	3 cut(s)	382, 404, 881
SfoI	GGCGCC	1 cut(s)	72
Sfr303I	CCGCGG	1 cut(s)	27
SgrBI	CCGCGG	1 cut(s)	27
SmiMI	CAYNNNNRTG	1 cut(s)	266
SmlI	CTYRAG	1 cut(s)	941
SmoI	CTYRAG	1 cut(s)	941
Sse9I	AATT	4 cut(s)	159, 422, 537, 697
SsiI	CCGC	4 cut(s)	24, 26, 156, 459
SspDI	GGCGCC	1 cut(s)	70
SspI	AATATT	3 cut(s)	299, 628, 904
StyD4I	CCNGG	2 cut(s)	333, 723
StyI	CCWWGG	2 cut(s)	672, 801
TaaI	ACNGT	4 cut(s)	91, 216, 436, 575
TaiI	ACGT	1 cut(s)	201
TaqII	GACCGA	1 cut(s)	233
TasI	AATT	4 cut(s)	159, 422, 537, 697
TatI	WGTACW	1 cut(s)	918
TauI	GCSGC	2 cut(s)	29, 461
Tru1I	TTAA	4 cut(s)	278, 315, 708, 890
Tru9I	TTAA	4 cut(s)	278, 315, 708, 890
TscAI	CASTG	4 cut(s)	133, 394, 441, 882
TseI	GCWGC	3 cut(s)	290, 527, 869
TspDTI	ATGAA	3 cut(s)	755, 829, 899
TspRI	CASTG	4 cut(s)	133, 394, 441, 882
XapI	RAATTY	1 cut(s)	422
XceI	RCATGY	2 cut(s)	507, 749
XmnI	GAANNNNTTC	1 cut(s)	541
Zsp2I	ATGCAT	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.