Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0007201

Physical Location & Seq

Genomic Coordinates Forward (+)

1994575 .. 1998666

Gene Structure 4092 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG031100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGAAACAAAGGGTGTTTTTCAAGAAGAAGAAGAAGAAGCCAACTATGTCTTGTTTAAAATTCTCCATATTGGTCCTCTGTCTCCATGTATCTTGTTCCGGTGCCCTGGATTATCGTAAAGATCCTGTCTTGACAATTAGGCAAAAAGATAGCATGTTACCTATGATCTCCCCTACCGCGGCTCCTAAGCCGTTTCTTCCCCTTCTTGCTCCTTCACCATTGGCGCCATTCACAAACATTACTGTTCCAAAAATATCAGGACAATGTATGCTGAACTTCACTGCTTCTGAGAGTTTGATGAGTACGACCGCAATTGATTGTTGGTCTGTTTTTGCACCATTGCTGGCAAACGTTATTTGTTGCCCACAGTTGGAAGCTACTATCACAATCCTCATCGGTCAGTCCAGTAAATACACCAATGTGCTTGCTTTAAATGGGACGGCTGCAAAATATTGTCTATCCGATATTAAGCAGATTTTGGTTAGCCAGGGTGCAAATGACACCCTTGCGCAAATATGCTCAGTTCGTTCAACAGATCTCACTGATGCATCTTGCCCCATCATTGATGTTACTGAATTTGAGGAGACAGTGGATACTTCCAAGTTGGTGGCCGCTTGTGAGAAGATAGACCCTGTGAAAGAATGCTGTGCTCAAACATGTCAGAATGCCATATTAGAAGCTGCTACGAGAATTGCTTCAAAAACTTCTGATCTTTTGAGCACAGACGGTGGTCATGCTGTCTTACCTGATCACATAAGTAGAGTCAATGACTGCAAAAATATTGTCCTTCGCTGGCTGGCAAGTAAACTCAATCCTTCTCATGCCAAGGAAGTTCTAAGGGGACTCTCAAATTGCAAGATTAACAAGGTTTGCCCCCTGGTCTTCCCAAATATGAAACATGTTGCACTCGGCTGTGGGGATGAGATAAGCAACCAGACAGCTTGCTGTACGGCCATGGACAGCTATGTTTCCCACTTGCAAAAGCAGAGTTTCATAACCAACTTGCAAGCTTTGGATTGTGCTGCATCACTGGGAATGAAGTTAAGAAAATCCAATATTACCAAAGATGTGTACAGCCTATGTCATATAAGCCTCAAGGATTTCTCCCTTCAAGGTTACTGCTTTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

376

Amino Acids

40.9

Weight (kDa)

8.61

Isoelectric Point (pI)

51.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPARK	PF19160	86 - 234	4.1e-23	SPARK
At1g61900	PF26584	289 - 362	3.4e-37	At1g61900-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61900 AT1G61900 AT1G61900
fragaria_vesca	FvH4_3g02240 FvH4_3g02240 FvH4_3g02240
malus_domestica	MD10G1320400.v1.1
prunus_persica	Prupe.4G021700_v2.0.a1 Prupe.4G021700_v2.0.a1
pyrus_communis	pycom05g31400 pycom10g27110
rosa_chinensis	RchiOBHm_Chr5g0003311
rosa_laevigata	RLG00000031123
rosa_multiflora	Rmu_sc0006842.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072660
rosa_rugosa	Rorug04G0402500 Rorug04G0402500 Rorug04G0402600
rosa_samantha	Rh5AG028700 Rh5BG028800 Rh5CG031100 Rh5DG029300
rosa_wichuraiana	Rw0G014050 Rw5G002670 Rw5G002720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	510
AccB1I	GGYRCC	2 cut(s)	101, 223
AccII	CGCG	1 cut(s)	179
AciI	CCGC	4 cut(s)	177, 179, 309, 612
AclI	AACGTT	1 cut(s)	351
AclWI	GGATC	1 cut(s)	116
AcoI	YGGCCR	2 cut(s)	609, 951
AcsI	RAATTY	2 cut(s)	59, 575
AcyI	GRCGYC	1 cut(s)	224
AfaI	GTAC	3 cut(s)	304, 949, 1073
AfiI	CCNNNNNNNGG	2 cut(s)	178, 370
AflIII	ACRYGT	2 cut(s)	656, 898
AgsI	TTSAA	4 cut(s)	22, 531, 699, 1112
AjnI	CCWGG	3 cut(s)	105, 486, 876
AleI	CACNNNNGTG	1 cut(s)	419
AluBI	AGCT	5 cut(s)	377, 680, 941, 963, 1010
AluI	AGCT	5 cut(s)	377, 680, 941, 963, 1010
Alw21I	GWGCWC	2 cut(s)	652, 722
Alw26I	GTCTC	2 cut(s)	86, 578
AlwI	GGATC	1 cut(s)	116
AoxI	GGCC	2 cut(s)	609, 951
ApeKI	GCWGC	3 cut(s)	443, 680, 1022
ApoI	RAATTY	2 cut(s)	59, 575
ArsI	GACNNNNNNTTYG	2 cut(s)	768, 800
Asp700I	GAANNNNTTC	1 cut(s)	694
AspLEI	GCGC	2 cut(s)	226, 511
AspS9I	GGNCC	1 cut(s)	73
AsuHPI	GGTGA	1 cut(s)	207
AvaII	GGWCC	1 cut(s)	73
BaeGI	GKGCMC	1 cut(s)	106
BanI	GGYRCC	2 cut(s)	101, 223
BbsI	GAAGAC	1 cut(s)	874
Bbv12I	GWGCWC	2 cut(s)	652, 722
BbvI	GCAGC	3 cut(s)	430, 667, 1009
BccI	CCATC	1 cut(s)	566
BceAI	ACGGC	3 cut(s)	175, 456, 966
BciT130I	CCWGG	3 cut(s)	107, 488, 878
BciVI	GTATCC	1 cut(s)	586
BclI	TGATCA	1 cut(s)	748
BcoDI	GTCTC	2 cut(s)	86, 578
BfoI	RGCGCY	1 cut(s)	227
BfuI	GTATCC	1 cut(s)	586
BglII	AGATCT	1 cut(s)	535
BisI	GCNGC	5 cut(s)	180, 444, 612, 681, 1023
BlsI	GCNGC	5 cut(s)	181, 445, 613, 682, 1024
Bme1390I	CCNGG	3 cut(s)	107, 488, 878
Bme18I	GGWCC	1 cut(s)	73
BmgT120I	GGNCC	1 cut(s)	73
BmiI	GGNNCC	3 cut(s)	103, 183, 225
BmrFI	CCNGG	3 cut(s)	107, 488, 878
BmrI	ACTGGG	1 cut(s)	1040
BmsI	GCATC	3 cut(s)	535, 557, 1034
BmuI	ACTGGG	1 cut(s)	1040
BoxI	GACNNNNGTC	1 cut(s)	729
BpiI	GAAGAC	1 cut(s)	874
Bpu10I	CCTNAGC	1 cut(s)	186
BpuEI	CTTGAG	1 cut(s)	1079
BsaHI	GRCGYC	1 cut(s)	224
BsaJI	CCNNGG	6 cut(s)	105, 177, 487, 825, 876, 954
BsaWI	WCCGGW	1 cut(s)	98
BsaXI	ACNNNNNCTCC	2 cut(s)	166, 196
Bsc4I	CCNNNNNNNGG	2 cut(s)	178, 370
Bse1I	ACTGG	2 cut(s)	405, 1035
Bse3DI	GCAATG	1 cut(s)	338
BseBI	CCWGG	3 cut(s)	107, 488, 878
BseDI	CCNNGG	6 cut(s)	105, 177, 487, 825, 876, 954
BseGI	GGATG	1 cut(s)	925
BseLI	CCNNNNNNNGG	2 cut(s)	178, 370
BseMI	GCAATG	1 cut(s)	338
BseMII	CTCAG	2 cut(s)	279, 534
BseNI	ACTGG	2 cut(s)	405, 1035
BseRI	GAGGAG	1 cut(s)	596
BseSI	GKGCMC	1 cut(s)	106
BseXI	GCAGC	3 cut(s)	430, 667, 1009
Bsh1236I	CGCG	1 cut(s)	179
Bsh1285I	CGRYCG	1 cut(s)	309
BshFI	GGCC	2 cut(s)	611, 953
BshNI	GGYRCC	2 cut(s)	101, 223
BsiEI	CGRYCG	1 cut(s)	309
BsiHKAI	GWGCWC	2 cut(s)	652, 722
BsiSI	CCGG	1 cut(s)	99
BslFI	GGGAC	2 cut(s)	451, 855
BslI	CCNNNNNNNGG	2 cut(s)	178, 370
BsmAI	GTCTC	2 cut(s)	86, 578
BsmFI	GGGAC	2 cut(s)	451, 855
BsmI	GAATGC	2 cut(s)	647, 670
BsnI	GGCC	2 cut(s)	611, 953
Bsp1286I	GDGCHC	3 cut(s)	106, 652, 722
Bsp1407I	TGTACA	1 cut(s)	1071
Bsp143I	GATC	5 cut(s)	121, 165, 535, 709, 748
Bsp19I	CCATGG	1 cut(s)	954
BspACI	CCGC	4 cut(s)	177, 179, 309, 612
BspANI	GGCC	2 cut(s)	611, 953
BspCNI	CTCAG	2 cut(s)	280, 533
BspFNI	CGCG	1 cut(s)	179
BspLI	GGNNCC	3 cut(s)	103, 183, 225
BspPI	GGATC	1 cut(s)	116
BspT107I	GGYRCC	2 cut(s)	101, 223
BsrDI	GCAATG	1 cut(s)	338
BsrGI	TGTACA	1 cut(s)	1071
BsrI	ACTGG	2 cut(s)	405, 1035
BssECI	CCNNGG	6 cut(s)	105, 177, 487, 825, 876, 954
BssMI	GATC	5 cut(s)	121, 165, 535, 709, 748
BssNI	GRCGYC	1 cut(s)	224
BssT1I	CCWWGG	2 cut(s)	825, 954
Bst2UI	CCWGG	3 cut(s)	107, 488, 878
Bst4CI	ACNGT	4 cut(s)	244, 369, 589, 728
BstACI	GRCGYC	1 cut(s)	224
BstAUI	TGTACA	1 cut(s)	1071
BstC8I	GCNNGC	6 cut(s)	345, 426, 794, 798, 943, 1008
BstDEI	CTNAG	4 cut(s)	186, 288, 520, 836
BstDSI	CCRYGG	2 cut(s)	177, 954
BstF5I	GGATG	1 cut(s)	925
BstFNI	CGCG	1 cut(s)	179
BstH2I	RGCGCY	1 cut(s)	227
BstHHI	GCGC	2 cut(s)	226, 511
BstKTI	GATC	5 cut(s)	124, 168, 538, 712, 751
BstMAI	GTCTC	2 cut(s)	86, 578
BstMBI	GATC	5 cut(s)	121, 165, 535, 709, 748
BstMCI	CGRYCG	1 cut(s)	309
BstNI	CCWGG	3 cut(s)	107, 488, 878
BstNSI	RCATGY	3 cut(s)	157, 660, 902
BstPAI	GACNNNNGTC	1 cut(s)	729
BstSCI	CCNGG	3 cut(s)	105, 486, 876
BstSLI	GKGCMC	1 cut(s)	106
BstUI	CGCG	1 cut(s)	179
BstV1I	GCAGC	3 cut(s)	430, 667, 1009
BstV2I	GAAGAC	1 cut(s)	874
BstX2I	RGATCY	2 cut(s)	121, 535
BstXI	CCANNNNNNTGG	1 cut(s)	607
BstYI	RGATCY	2 cut(s)	121, 535
BsuI	GTATCC	1 cut(s)	586
BsuRI	GGCC	2 cut(s)	611, 953
BtgI	CCRYGG	2 cut(s)	177, 954
BtsCI	GGATG	1 cut(s)	925
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	4 cut(s)	279, 540, 594, 1028
Cac8I	GCNNGC	6 cut(s)	345, 426, 794, 798, 943, 1008
CfoI	GCGC	2 cut(s)	226, 511
Cfr13I	GGNCC	1 cut(s)	73
Cfr42I	CCGCGG	1 cut(s)	180
Csp6I	GTAC	3 cut(s)	303, 948, 1072
CviAII	CATG	7 cut(s)	86, 154, 657, 734, 821, 899, 955
CviQI	GTAC	3 cut(s)	303, 948, 1072
DdeI	CTNAG	4 cut(s)	186, 288, 520, 836
DinI	GGCGCC	1 cut(s)	225
DpnI	GATC	5 cut(s)	123, 167, 537, 711, 750
DpnII	GATC	5 cut(s)	121, 165, 535, 709, 748
DraI	TTTAAA	2 cut(s)	57, 432
EaeI	YGGCCR	2 cut(s)	609, 951
Eco130I	CCWWGG	2 cut(s)	825, 954
Eco47I	GGWCC	1 cut(s)	73
EcoRII	CCWGG	3 cut(s)	105, 486, 876
EcoT14I	CCWWGG	2 cut(s)	825, 954
EcoT22I	ATGCAT	1 cut(s)	550
EgeI	GGCGCC	1 cut(s)	225
EheI	GGCGCC	1 cut(s)	225
ErhI	CCWWGG	2 cut(s)	825, 954
FaeI	CATG	7 cut(s)	89, 157, 660, 737, 824, 902, 958
FaqI	GGGAC	2 cut(s)	451, 855
FatI	CATG	7 cut(s)	85, 153, 656, 733, 820, 898, 954
FbaI	TGATCA	1 cut(s)	748
Fnu4HI	GCNGC	5 cut(s)	180, 444, 612, 681, 1023
FokI	GGATG	1 cut(s)	932
Fsp4HI	GCNGC	5 cut(s)	180, 444, 612, 681, 1023
FspI	TGCGCA	1 cut(s)	510
GlaI	GCGC	2 cut(s)	225, 510
GluI	GCNGC	5 cut(s)	180, 444, 612, 681, 1023
HaeII	RGCGCY	1 cut(s)	227
HaeIII	GGCC	2 cut(s)	611, 953
HapII	CCGG	1 cut(s)	99
HhaI	GCGC	2 cut(s)	226, 511
Hin1I	GRCGYC	1 cut(s)	224
Hin1II	CATG	7 cut(s)	89, 157, 660, 737, 824, 902, 958
Hin6I	GCGC	2 cut(s)	224, 509
HinP1I	GCGC	2 cut(s)	224, 509
HindIII	AAGCTT	1 cut(s)	1008
HinfI	GANTC	2 cut(s)	762, 843
HpaII	CCGG	1 cut(s)	99
HphI	GGTGA	1 cut(s)	207
Hpy166II	GTNNAC	2 cut(s)	806, 1072
Hpy188I	TCNGA	4 cut(s)	289, 463, 663, 709
Hpy188III	TCNNGA	3 cut(s)	22, 130, 258
Hpy8I	GTNNAC	2 cut(s)	806, 1072
HpyAV	CCTTC	5 cut(s)	212, 222, 797, 825, 1118
HpyCH4III	ACNGT	4 cut(s)	244, 369, 589, 728
HpyCH4IV	ACGT	1 cut(s)	351
HpyF3I	CTNAG	4 cut(s)	186, 288, 520, 836
HpySE526I	ACGT	1 cut(s)	351
Hsp92I	GRCGYC	1 cut(s)	224
Hsp92II	CATG	7 cut(s)	89, 157, 660, 737, 824, 902, 958
HspAI	GCGC	2 cut(s)	224, 509
KasI	GGCGCC	1 cut(s)	223
Ksp22I	TGATCA	1 cut(s)	748
KspI	CCGCGG	1 cut(s)	180
Kzo9I	GATC	5 cut(s)	121, 165, 535, 709, 748
LmnI	GCTCC	2 cut(s)	187, 214
Lsp1109I	GCAGC	3 cut(s)	430, 667, 1009
LweI	GCATC	3 cut(s)	535, 557, 1034
MaeII	ACGT	1 cut(s)	351
MaeIII	GTNAC	3 cut(s)	156, 568, 1115
MalI	GATC	5 cut(s)	123, 167, 537, 711, 750
MboI	GATC	5 cut(s)	121, 165, 535, 709, 748
MboII	GAAGA	7 cut(s)	37, 40, 43, 46, 188, 634, 874
MfeI	CAATTG	1 cut(s)	312
MflI	RGATCY	2 cut(s)	121, 535
MhlI	GDGCHC	3 cut(s)	106, 652, 722
MluCI	AATT	6 cut(s)	59, 135, 312, 575, 690, 850
Mly113I	GGCGCC	1 cut(s)	224
MlyI	GAGTC	2 cut(s)	771, 837
MmeI	TCCRAC	1 cut(s)	351
MnlI	CCTC	4 cut(s)	86, 401, 574, 1103
Mph1103I	ATGCAT	1 cut(s)	550
MroXI	GAANNNNTTC	1 cut(s)	694
MseI	TTAA	5 cut(s)	56, 431, 468, 861, 1043
MslI	CAYNNNNRTG	1 cut(s)	419
MspA1I	CMGCKG	1 cut(s)	179
MspI	CCGG	1 cut(s)	99
MspR9I	CCNGG	3 cut(s)	107, 488, 878
MunI	CAATTG	1 cut(s)	312
Mva1269I	GAATGC	2 cut(s)	647, 670
MvaI	CCWGG	3 cut(s)	107, 488, 878
MvnI	CGCG	1 cut(s)	179
NarI	GGCGCC	1 cut(s)	224
NcoI	CCATGG	1 cut(s)	954
NdeII	GATC	5 cut(s)	121, 165, 535, 709, 748
NlaIII	CATG	7 cut(s)	89, 157, 660, 737, 824, 902, 958
NlaIV	GGNNCC	3 cut(s)	103, 183, 225
NmeAIII	GCCGAG	1 cut(s)	888
NsbI	TGCGCA	1 cut(s)	510
NsiI	ATGCAT	1 cut(s)	550
NspI	RCATGY	3 cut(s)	157, 660, 902
OliI	CACNNNNGTG	1 cut(s)	419
PciI	ACATGT	2 cut(s)	656, 898
PctI	GAATGC	2 cut(s)	647, 670
PdmI	GAANNNNTTC	1 cut(s)	694
PkrI	GCNGC	5 cut(s)	181, 445, 613, 682, 1024
PleI	GAGTC	2 cut(s)	770, 837
PluTI	GGCGCC	1 cut(s)	227
PpsI	GAGTC	2 cut(s)	770, 837
PscI	ACATGT	2 cut(s)	656, 898
PshAI	GACNNNNGTC	1 cut(s)	729
Psp1406I	AACGTT	1 cut(s)	351
Psp6I	CCWGG	3 cut(s)	105, 486, 876
PspGI	CCWGG	3 cut(s)	105, 486, 876
PspN4I	GGNNCC	3 cut(s)	103, 183, 225
PspPI	GGNCC	1 cut(s)	73
PsuI	RGATCY	2 cut(s)	121, 535
RsaI	GTAC	3 cut(s)	304, 949, 1073
RsaNI	GTAC	3 cut(s)	303, 948, 1072
RseI	CAYNNNNRTG	1 cut(s)	419
SacII	CCGCGG	1 cut(s)	180
SaqAI	TTAA	5 cut(s)	56, 431, 468, 861, 1043
SatI	GCNGC	5 cut(s)	180, 444, 612, 681, 1023
Sau3AI	GATC	5 cut(s)	121, 165, 535, 709, 748
Sau96I	GGNCC	1 cut(s)	73
SchI	GAGTC	2 cut(s)	771, 837
ScrFI	CCNGG	3 cut(s)	107, 488, 878
SduI	GDGCHC	3 cut(s)	106, 652, 722
SfaNI	GCATC	3 cut(s)	535, 557, 1034
SfoI	GGCGCC	1 cut(s)	225
Sfr303I	CCGCGG	1 cut(s)	180
SgrBI	CCGCGG	1 cut(s)	180
SinI	GGWCC	1 cut(s)	73
SmiMI	CAYNNNNRTG	1 cut(s)	419
SmlI	CTYRAG	1 cut(s)	1094
SmoI	CTYRAG	1 cut(s)	1094
Sse9I	AATT	6 cut(s)	59, 135, 312, 575, 690, 850
SsiI	CCGC	4 cut(s)	177, 179, 309, 612
SspDI	GGCGCC	1 cut(s)	223
SspI	AATATT	3 cut(s)	452, 781, 1057
StyD4I	CCNGG	3 cut(s)	105, 486, 876
StyI	CCWWGG	2 cut(s)	825, 954
TaaI	ACNGT	4 cut(s)	244, 369, 589, 728
TaiI	ACGT	1 cut(s)	354
TaqII	GACCGA	1 cut(s)	386
TasI	AATT	6 cut(s)	59, 135, 312, 575, 690, 850
TatI	WGTACW	1 cut(s)	1071
TauI	GCSGC	2 cut(s)	182, 614
Tru1I	TTAA	5 cut(s)	56, 431, 468, 861, 1043
Tru9I	TTAA	5 cut(s)	56, 431, 468, 861, 1043
TscAI	CASTG	4 cut(s)	286, 547, 594, 1035
TseI	GCWGC	3 cut(s)	443, 680, 1022
TspDTI	ATGAA	4 cut(s)	17, 908, 982, 1052
TspRI	CASTG	4 cut(s)	286, 547, 594, 1035
VpaK11BI	GGWCC	1 cut(s)	73
XapI	RAATTY	2 cut(s)	59, 575
XceI	RCATGY	3 cut(s)	157, 660, 902
XmnI	GAANNNNTTC	1 cut(s)	694
Zsp2I	ATGCAT	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.