Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0007201

Physical Location & Seq

Genomic Coordinates Forward (+)

2119167 .. 2123168

Gene Structure 4002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG029300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGAAACAAAGGGTGTTTTTCAACAACAAGAAGAAGCCAACTATGTCTTGTTTAAAATTCTCCATATTGGTCCTCTGTCTCCATGTATCTTGTTCCGGTGCCCTGGATTATCGTAAAGATCCTGTCTTGACAATTAGGCAAAAAGATAGCATGTTACCTATGATCTCCCCTACCGCGGCTCCTAAGCCGTTTCTTCCCCTTCTTGCTCCTTCACCATTGGCGCCATTCACAAACATTACTGTTCCAAAAATATCAGGACAATGTATGCTGAACTTCACTGCTTCTGAGAGTTTGATGAGTATGACCGCAATTGATTGTTGGTCTGTTTTTGCACCATTGCTGGCAAACGTTATTTGTTGCCCACAGTTGGAAGCTACTATCACAATCCTCATCGGTCAGTCCAGTAAATACACCAATGTGCTTGCTTTAAATGGGACGGCTGCAAAATATTGTCTATCCGATATTAAGCAGATTTTGGTTAGCCAGGGCGCAAATGACACCCTTGCGCAAATATGCTCAGTTCGATCAACAGATCTCACTGATGCATCTTGCCCCATCATTGATGTTACTGAATTTGAGGAGACAGTGGATACTTCCAAGTTGGTGGCCGCTTGTGAGAAGATAGACCCTGTGAAAGAATGCTGCGCTCAAACATGTCAGAATGCCATATTAGAAGCTGCTACGAGAATTGCTTCAAAAACTTCTGATCTTTTGAGCACAGACGGTGGTCATGCTGTCTTACCTGATCACATAAGTAGAGTCAATGACTGCAAAAATATTGTCCTTCGCTGGCTGGCAAGTAAACTCAATCCTTCTCATGCCAAGGAAGTTCTAAGGGGACTCTCAAATTGCAAGATTAACAAGGTTTGCCCCCTGGTCTTCCCAAATATGAAACATGTTGCACTTGGCTGTGGGGATGAGATAAGCAACCAGACAGCTTGCTGTACGGCCATGGACAGCTATGTTTCCCACTTGCAAAAGCAGAGTTTCATAACCAACTTGCAAGCTTTGGATTGTGCTGCATCACTGGGAATGAAGTTAAGAAAAACAAATATTACCAAAGATGTGTACAGCCTATGTCATATAAGCCTCAAGGATTTCTCCCTTCAAGGTTACTGCTTTCTTCTAGTCCATTTTTTTCAGCAAACTAAGCATTTCTTATCATGTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

390

Amino Acids

42.66

Weight (kDa)

8.44

Isoelectric Point (pI)

51.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPARK	PF19160	85 - 233	4.1e-23	SPARK
At1g61900	PF26584	288 - 361	4.7e-37	At1g61900-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61900 AT1G61900 AT1G61900
fragaria_vesca	FvH4_3g02240 FvH4_3g02240 FvH4_3g02240
malus_domestica	MD10G1320400.v1.1
prunus_persica	Prupe.4G021700_v2.0.a1 Prupe.4G021700_v2.0.a1
pyrus_communis	pycom05g31400 pycom10g27110
rosa_chinensis	RchiOBHm_Chr5g0003311
rosa_laevigata	RLG00000031123
rosa_multiflora	Rmu_sc0006842.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072660
rosa_rugosa	Rorug04G0402500 Rorug04G0402500 Rorug04G0402600
rosa_samantha	Rh5AG028700 Rh5BG028800 Rh5CG031100 Rh5DG029300
rosa_wichuraiana	Rw0G014050 Rw5G002670 Rw5G002720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	507
AccB1I	GGYRCC	2 cut(s)	98, 220
AccII	CGCG	1 cut(s)	176
AciI	CCGC	4 cut(s)	174, 176, 306, 609
AclI	AACGTT	1 cut(s)	348
AclWI	GGATC	1 cut(s)	113
AcoI	YGGCCR	2 cut(s)	606, 948
AcsI	RAATTY	2 cut(s)	56, 572
AcyI	GRCGYC	1 cut(s)	221
AfaI	GTAC	2 cut(s)	946, 1070
AfiI	CCNNNNNNNGG	2 cut(s)	175, 367
AflIII	ACRYGT	2 cut(s)	653, 895
AgsI	TTSAA	3 cut(s)	22, 696, 1109
AjnI	CCWGG	3 cut(s)	102, 483, 873
AleI	CACNNNNGTG	1 cut(s)	416
AluBI	AGCT	5 cut(s)	374, 677, 938, 960, 1007
AluI	AGCT	5 cut(s)	374, 677, 938, 960, 1007
Alw21I	GWGCWC	1 cut(s)	719
Alw26I	GTCTC	2 cut(s)	83, 575
AlwI	GGATC	1 cut(s)	113
AoxI	GGCC	2 cut(s)	606, 948
ApeKI	GCWGC	4 cut(s)	440, 642, 677, 1019
ApoI	RAATTY	2 cut(s)	56, 572
ArsI	GACNNNNNNTTYG	2 cut(s)	765, 797
Asp700I	GAANNNNTTC	1 cut(s)	691
AspLEI	GCGC	4 cut(s)	223, 491, 508, 647
AspS9I	GGNCC	1 cut(s)	70
AsuHPI	GGTGA	1 cut(s)	204
AvaII	GGWCC	1 cut(s)	70
BaeGI	GKGCMC	1 cut(s)	103
BanI	GGYRCC	2 cut(s)	98, 220
BbsI	GAAGAC	1 cut(s)	871
Bbv12I	GWGCWC	1 cut(s)	719
BbvI	GCAGC	4 cut(s)	427, 629, 664, 1006
BccI	CCATC	1 cut(s)	563
BceAI	ACGGC	3 cut(s)	172, 453, 963
BciT130I	CCWGG	3 cut(s)	104, 485, 875
BciVI	GTATCC	1 cut(s)	583
BclI	TGATCA	1 cut(s)	745
BcoDI	GTCTC	2 cut(s)	83, 575
BfaI	CTAG	1 cut(s)	1127
BfoI	RGCGCY	1 cut(s)	224
BfuI	GTATCC	1 cut(s)	583
BglII	AGATCT	1 cut(s)	532
BisI	GCNGC	6 cut(s)	177, 441, 609, 643, 678, 1020
BlsI	GCNGC	6 cut(s)	178, 442, 610, 644, 679, 1021
Bme1390I	CCNGG	3 cut(s)	104, 485, 875
Bme18I	GGWCC	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	70
BmiI	GGNNCC	3 cut(s)	100, 180, 222
BmrFI	CCNGG	3 cut(s)	104, 485, 875
BmrI	ACTGGG	1 cut(s)	1037
BmsI	GCATC	3 cut(s)	532, 554, 1031
BmuI	ACTGGG	1 cut(s)	1037
BoxI	GACNNNNGTC	1 cut(s)	726
BpiI	GAAGAC	1 cut(s)	871
Bpu10I	CCTNAGC	1 cut(s)	183
BpuEI	CTTGAG	1 cut(s)	1076
BsaHI	GRCGYC	1 cut(s)	221
BsaJI	CCNNGG	6 cut(s)	102, 174, 484, 822, 873, 951
BsaWI	WCCGGW	1 cut(s)	95
BsaXI	ACNNNNNCTCC	2 cut(s)	163, 193
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 367
Bse1I	ACTGG	2 cut(s)	402, 1032
Bse3DI	GCAATG	1 cut(s)	335
BseBI	CCWGG	3 cut(s)	104, 485, 875
BseDI	CCNNGG	6 cut(s)	102, 174, 484, 822, 873, 951
BseGI	GGATG	1 cut(s)	922
BseLI	CCNNNNNNNGG	2 cut(s)	175, 367
BseMI	GCAATG	1 cut(s)	335
BseMII	CTCAG	2 cut(s)	276, 531
BseNI	ACTGG	2 cut(s)	402, 1032
BseRI	GAGGAG	1 cut(s)	593
BseSI	GKGCMC	1 cut(s)	103
BseXI	GCAGC	4 cut(s)	427, 629, 664, 1006
Bsh1236I	CGCG	1 cut(s)	176
BshFI	GGCC	2 cut(s)	608, 950
BshNI	GGYRCC	2 cut(s)	98, 220
BsiHKAI	GWGCWC	1 cut(s)	719
BsiSI	CCGG	1 cut(s)	96
BslFI	GGGAC	2 cut(s)	448, 852
BslI	CCNNNNNNNGG	2 cut(s)	175, 367
BsmAI	GTCTC	2 cut(s)	83, 575
BsmFI	GGGAC	2 cut(s)	448, 852
BsmI	GAATGC	2 cut(s)	644, 667
BsnI	GGCC	2 cut(s)	608, 950
Bsp1286I	GDGCHC	2 cut(s)	103, 719
Bsp1407I	TGTACA	1 cut(s)	1068
Bsp143I	GATC	6 cut(s)	118, 162, 524, 532, 706, 745
Bsp19I	CCATGG	1 cut(s)	951
BspACI	CCGC	4 cut(s)	174, 176, 306, 609
BspANI	GGCC	2 cut(s)	608, 950
BspCNI	CTCAG	2 cut(s)	277, 530
BspFNI	CGCG	1 cut(s)	176
BspLI	GGNNCC	3 cut(s)	100, 180, 222
BspPI	GGATC	1 cut(s)	113
BspT107I	GGYRCC	2 cut(s)	98, 220
BsrDI	GCAATG	1 cut(s)	335
BsrGI	TGTACA	1 cut(s)	1068
BsrI	ACTGG	2 cut(s)	402, 1032
BssECI	CCNNGG	6 cut(s)	102, 174, 484, 822, 873, 951
BssMI	GATC	6 cut(s)	118, 162, 524, 532, 706, 745
BssNI	GRCGYC	1 cut(s)	221
BssT1I	CCWWGG	2 cut(s)	822, 951
Bst2UI	CCWGG	3 cut(s)	104, 485, 875
Bst4CI	ACNGT	4 cut(s)	241, 366, 586, 725
BstACI	GRCGYC	1 cut(s)	221
BstAUI	TGTACA	1 cut(s)	1068
BstC8I	GCNNGC	6 cut(s)	342, 423, 791, 795, 940, 1005
BstDEI	CTNAG	5 cut(s)	183, 285, 517, 833, 1149
BstDSI	CCRYGG	2 cut(s)	174, 951
BstF5I	GGATG	1 cut(s)	922
BstFNI	CGCG	1 cut(s)	176
BstH2I	RGCGCY	1 cut(s)	224
BstHHI	GCGC	4 cut(s)	223, 491, 508, 647
BstKTI	GATC	6 cut(s)	121, 165, 527, 535, 709, 748
BstMAI	GTCTC	2 cut(s)	83, 575
BstMBI	GATC	6 cut(s)	118, 162, 524, 532, 706, 745
BstMWI	GCNNNNNNNGC	1 cut(s)	1150
BstNI	CCWGG	3 cut(s)	104, 485, 875
BstNSI	RCATGY	3 cut(s)	154, 657, 899
BstPAI	GACNNNNGTC	1 cut(s)	726
BstSCI	CCNGG	3 cut(s)	102, 483, 873
BstSLI	GKGCMC	1 cut(s)	103
BstUI	CGCG	1 cut(s)	176
BstV1I	GCAGC	4 cut(s)	427, 629, 664, 1006
BstV2I	GAAGAC	1 cut(s)	871
BstX2I	RGATCY	2 cut(s)	118, 532
BstXI	CCANNNNNNTGG	1 cut(s)	604
BstYI	RGATCY	2 cut(s)	118, 532
BsuI	GTATCC	1 cut(s)	583
BsuRI	GGCC	2 cut(s)	608, 950
BtgI	CCRYGG	2 cut(s)	174, 951
BtsCI	GGATG	1 cut(s)	922
BtsI	GCAGTG	1 cut(s)	276
BtsIMutI	CAGTG	4 cut(s)	276, 537, 591, 1025
Cac8I	GCNNGC	6 cut(s)	342, 423, 791, 795, 940, 1005
CfoI	GCGC	4 cut(s)	223, 491, 508, 647
Cfr13I	GGNCC	1 cut(s)	70
Cfr42I	CCGCGG	1 cut(s)	177
Csp6I	GTAC	2 cut(s)	945, 1069
CviAII	CATG	8 cut(s)	83, 151, 654, 731, 818, 896, 952, 1164
CviQI	GTAC	2 cut(s)	945, 1069
DdeI	CTNAG	5 cut(s)	183, 285, 517, 833, 1149
DinI	GGCGCC	1 cut(s)	222
DpnI	GATC	6 cut(s)	120, 164, 526, 534, 708, 747
DpnII	GATC	6 cut(s)	118, 162, 524, 532, 706, 745
DraI	TTTAAA	2 cut(s)	54, 429
EaeI	YGGCCR	2 cut(s)	606, 948
Eco130I	CCWWGG	2 cut(s)	822, 951
Eco47I	GGWCC	1 cut(s)	70
EcoRII	CCWGG	3 cut(s)	102, 483, 873
EcoT14I	CCWWGG	2 cut(s)	822, 951
EcoT22I	ATGCAT	1 cut(s)	547
EgeI	GGCGCC	1 cut(s)	222
EheI	GGCGCC	1 cut(s)	222
ErhI	CCWWGG	2 cut(s)	822, 951
FaeI	CATG	8 cut(s)	86, 154, 657, 734, 821, 899, 955, 1167
FalI	AAGNNNNNCTT	1 cut(s)	1142
FaqI	GGGAC	2 cut(s)	448, 852
FatI	CATG	8 cut(s)	82, 150, 653, 730, 817, 895, 951, 1163
FbaI	TGATCA	1 cut(s)	745
Fnu4HI	GCNGC	6 cut(s)	177, 441, 609, 643, 678, 1020
FokI	GGATG	1 cut(s)	929
Fsp4HI	GCNGC	6 cut(s)	177, 441, 609, 643, 678, 1020
FspBI	CTAG	1 cut(s)	1127
FspI	TGCGCA	1 cut(s)	507
GlaI	GCGC	4 cut(s)	222, 490, 507, 646
GluI	GCNGC	6 cut(s)	177, 441, 609, 643, 678, 1020
HaeII	RGCGCY	1 cut(s)	224
HaeIII	GGCC	2 cut(s)	608, 950
HapII	CCGG	1 cut(s)	96
HhaI	GCGC	4 cut(s)	223, 491, 508, 647
Hin1I	GRCGYC	1 cut(s)	221
Hin1II	CATG	8 cut(s)	86, 154, 657, 734, 821, 899, 955, 1167
Hin6I	GCGC	4 cut(s)	221, 489, 506, 645
HinP1I	GCGC	4 cut(s)	221, 489, 506, 645
HindIII	AAGCTT	1 cut(s)	1005
HinfI	GANTC	2 cut(s)	759, 840
HpaII	CCGG	1 cut(s)	96
HphI	GGTGA	1 cut(s)	204
Hpy166II	GTNNAC	2 cut(s)	803, 1069
Hpy188I	TCNGA	4 cut(s)	286, 460, 660, 706
Hpy188III	TCNNGA	2 cut(s)	127, 255
Hpy8I	GTNNAC	2 cut(s)	803, 1069
HpyAV	CCTTC	5 cut(s)	209, 219, 794, 822, 1115
HpyCH4III	ACNGT	4 cut(s)	241, 366, 586, 725
HpyCH4IV	ACGT	1 cut(s)	348
HpyCH4V	TGCA	9 cut(s)	332, 443, 545, 771, 852, 902, 976, 1003, 1022
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1150
HpyF3I	CTNAG	5 cut(s)	183, 285, 517, 833, 1149
HpySE526I	ACGT	1 cut(s)	348
Hsp92I	GRCGYC	1 cut(s)	221
Hsp92II	CATG	8 cut(s)	86, 154, 657, 734, 821, 899, 955, 1167
HspAI	GCGC	4 cut(s)	221, 489, 506, 645
KasI	GGCGCC	1 cut(s)	220
Ksp22I	TGATCA	1 cut(s)	745
KspI	CCGCGG	1 cut(s)	177
Kzo9I	GATC	6 cut(s)	118, 162, 524, 532, 706, 745
LmnI	GCTCC	2 cut(s)	184, 211
Lsp1109I	GCAGC	4 cut(s)	427, 629, 664, 1006
LweI	GCATC	3 cut(s)	532, 554, 1031
MaeI	CTAG	1 cut(s)	1127
MaeII	ACGT	1 cut(s)	348
MaeIII	GTNAC	4 cut(s)	153, 565, 1112, 1166
MalI	GATC	6 cut(s)	120, 164, 526, 534, 708, 747
MboI	GATC	6 cut(s)	118, 162, 524, 532, 706, 745
MboII	GAAGA	5 cut(s)	43, 185, 631, 871, 1115
MfeI	CAATTG	1 cut(s)	309
MflI	RGATCY	2 cut(s)	118, 532
MhlI	GDGCHC	2 cut(s)	103, 719
MluCI	AATT	6 cut(s)	56, 132, 309, 572, 687, 847
Mly113I	GGCGCC	1 cut(s)	221
MlyI	GAGTC	2 cut(s)	768, 834
MmeI	TCCRAC	1 cut(s)	348
MnlI	CCTC	4 cut(s)	83, 398, 571, 1100
Mph1103I	ATGCAT	1 cut(s)	547
MroXI	GAANNNNTTC	1 cut(s)	691
MseI	TTAA	5 cut(s)	53, 428, 465, 858, 1040
MslI	CAYNNNNRTG	1 cut(s)	416
MspA1I	CMGCKG	1 cut(s)	176
MspI	CCGG	1 cut(s)	96
MspR9I	CCNGG	3 cut(s)	104, 485, 875
MunI	CAATTG	1 cut(s)	309
Mva1269I	GAATGC	2 cut(s)	644, 667
MvaI	CCWGG	3 cut(s)	104, 485, 875
MvnI	CGCG	1 cut(s)	176
MwoI	GCNNNNNNNGC	1 cut(s)	1150
NarI	GGCGCC	1 cut(s)	221
NcoI	CCATGG	1 cut(s)	951
NdeII	GATC	6 cut(s)	118, 162, 524, 532, 706, 745
NlaIII	CATG	8 cut(s)	86, 154, 657, 734, 821, 899, 955, 1167
NlaIV	GGNNCC	3 cut(s)	100, 180, 222
NsbI	TGCGCA	1 cut(s)	507
NsiI	ATGCAT	1 cut(s)	547
NspI	RCATGY	3 cut(s)	154, 657, 899
OliI	CACNNNNGTG	1 cut(s)	416
PciI	ACATGT	2 cut(s)	653, 895
PctI	GAATGC	2 cut(s)	644, 667
PdmI	GAANNNNTTC	1 cut(s)	691
PkrI	GCNGC	6 cut(s)	178, 442, 610, 644, 679, 1021
PleI	GAGTC	2 cut(s)	767, 834
PluTI	GGCGCC	1 cut(s)	224
PpsI	GAGTC	2 cut(s)	767, 834
PscI	ACATGT	2 cut(s)	653, 895
PshAI	GACNNNNGTC	1 cut(s)	726
Psp1406I	AACGTT	1 cut(s)	348
Psp6I	CCWGG	3 cut(s)	102, 483, 873
PspGI	CCWGG	3 cut(s)	102, 483, 873
PspN4I	GGNNCC	3 cut(s)	100, 180, 222
PspPI	GGNCC	1 cut(s)	70
PsuI	RGATCY	2 cut(s)	118, 532
RsaI	GTAC	2 cut(s)	946, 1070
RsaNI	GTAC	2 cut(s)	945, 1069
RseI	CAYNNNNRTG	1 cut(s)	416
SacII	CCGCGG	1 cut(s)	177
SaqAI	TTAA	5 cut(s)	53, 428, 465, 858, 1040
SatI	GCNGC	6 cut(s)	177, 441, 609, 643, 678, 1020
Sau3AI	GATC	6 cut(s)	118, 162, 524, 532, 706, 745
Sau96I	GGNCC	1 cut(s)	70
SchI	GAGTC	2 cut(s)	768, 834
ScrFI	CCNGG	3 cut(s)	104, 485, 875
SduI	GDGCHC	2 cut(s)	103, 719
SfaNI	GCATC	3 cut(s)	532, 554, 1031
SfoI	GGCGCC	1 cut(s)	222
Sfr303I	CCGCGG	1 cut(s)	177
SgrBI	CCGCGG	1 cut(s)	177
SinI	GGWCC	1 cut(s)	70
SmiMI	CAYNNNNRTG	1 cut(s)	416
SmlI	CTYRAG	1 cut(s)	1091
SmoI	CTYRAG	1 cut(s)	1091
Sse9I	AATT	6 cut(s)	56, 132, 309, 572, 687, 847
SsiI	CCGC	4 cut(s)	174, 176, 306, 609
SspDI	GGCGCC	1 cut(s)	220
SspI	AATATT	3 cut(s)	449, 778, 1054
SspMI	CTAG	1 cut(s)	1127
StyD4I	CCNGG	3 cut(s)	102, 483, 873
StyI	CCWWGG	2 cut(s)	822, 951
TaaI	ACNGT	4 cut(s)	241, 366, 586, 725
TaiI	ACGT	1 cut(s)	351
TaqI	TCGA	1 cut(s)	523
TaqII	GACCGA	1 cut(s)	383
TasI	AATT	6 cut(s)	56, 132, 309, 572, 687, 847
TatI	WGTACW	1 cut(s)	1068
TauI	GCSGC	2 cut(s)	179, 611
Tru1I	TTAA	5 cut(s)	53, 428, 465, 858, 1040
Tru9I	TTAA	5 cut(s)	53, 428, 465, 858, 1040
TscAI	CASTG	4 cut(s)	283, 544, 591, 1032
TseI	GCWGC	4 cut(s)	440, 642, 677, 1019
TspDTI	ATGAA	4 cut(s)	17, 905, 979, 1049
TspRI	CASTG	4 cut(s)	283, 544, 591, 1032
VpaK11BI	GGWCC	1 cut(s)	70
XapI	RAATTY	2 cut(s)	56, 572
XceI	RCATGY	3 cut(s)	154, 657, 899
XmnI	GAANNNNTTC	1 cut(s)	691
XspI	CTAG	1 cut(s)	1127
Zsp2I	ATGCAT	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.