RchiOBHm_Chr5g0003311

GPI-anchored protein At1g61900-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
2045248 .. 2049201
3954 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28462

Sequence Viewer

Length: 1383 bp
ATGAAACAAAGGGTGTTTTTCAAGAAGAAGAAGAAGAAGCCAACCATGTCTTGTTTAAAATTCTCCATATTGGTCCTCTGTCTCCATGTATCTTGTTCCGGTGCCCTGGATTATCGTAAAGATCCTGTCTTGACAATTAGGCAAGAAGATAGCATGTTACCTATGATCTCCCCTACCGCGGCTCCTAAGCCGTTTCTTCCCCTTCTTGCTCCTTCACCATTGGCGCCATTCACAAACATTACTGTTCCAAAAATATCAGGACAATGTATGCTGAACTTCACTGCTTCTGAGAGTTTGATGAGTACGACCGCAATTGATTGTTGGTCTGTTTTTGCACCATTGCTGGCAAACGTTATTTGTTGCCCACAGTTGGAAGCTACTATCACAATCCTCATCGGTCAGTCCAGTAAATACACCAATGTGCTTGCTTTAAATGGGACGGCTGCAAAATATTGTCTATCCGATATTAAGCAGATTTTGGTTAGCCAGGGTGCAAATGACACCCTTGCGCAAATATGCTCAGTTCGTTCAACAGATCTCACTGATGCATCTTGCCCCATCATTGATGTTACTGAATTTGAGGAGACAGTGGATACTTCCAAGTTGGTGGCCGCTTGTGAGAAGATAGACCCTGTGAAAGAATGCTGTGCTCAAACATGTCAGAATGCCATATTAGAAGCTGCTACAAGAATTGCTTCAAAAACTTCTGATCTTTTGAGCACAGACGGTGGTCATGCTGTCTTACCTGATCACATAAGTAGAGTCAATGACTGCAAAAATATTGTCCTTCGCTGGCTGGCAAGTAAACTCAATCCTTCTCATGCCAAGGAAGTTCTAAGGGGACTCTCAAATTGCAAGATTAACAAGGTTTGCCCCCTGGTCTTCCCAAATATGAAACATGTTGCACTCGGCTGTGGGGATGAGATAAGCAACCAGACAGCTTGTTGTACGGCCATGGACAGCTATGTTTCCCACTTGCAAAAGCAGAGTTTCATAACCAACTTGCAAGCTTTGGATTGTGCTGCATCACTGGGAATGAAGTTAAGAAAATCAAATATTACCAAAGATGTGTACAGCCTATGTCATATAAGCCTCAAGGATTTCTCCCTTCAAGTTGGAAGTCAAGCATCTGGATGTCTTTTGCCAAGCTTGCCTTCGGATGCAATATTTGAAAGTTCAGGGGTCAGCTTCCTTTGTGATCTGAATGATAACATTCCAGCTCCCTGGCCCACCTCTTCTCAAGGAGCAGCTTCAACATGCAGTAAAGGTGTCAAGATTCCTGCACTTCCTGCAGCAGCATCAGCAGAAAGGGGCAATTACAACGATGTTGTGATGCTTTCTCTGCTCGTTGCTTTTGCAATGGCGCTTTTGATGTTCATGTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

460

Amino Acids

49.39

Weight (kDa)

8.08

Isoelectric Point (pI)

51.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPARK PF19160 86 - 234 6.3e-23 SPARK
At1g61900 PF26584 289 - 362 4.7e-37 At1g61900-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 510
AccB1I GGYRCC 2 cut(s) 101, 223
AccII CGCG 1 cut(s) 179
AciI CCGC 4 cut(s) 177, 179, 309, 612
AclI AACGTT 1 cut(s) 351
AclWI GGATC 1 cut(s) 116
AcoI YGGCCR 2 cut(s) 609, 951
AcsI RAATTY 2 cut(s) 59, 575
AcyI GRCGYC 1 cut(s) 224
AfaI GTAC 3 cut(s) 304, 949, 1073
AfiI CCNNNNNNNGG 2 cut(s) 178, 370
AflIII ACRYGT 2 cut(s) 656, 898
AgsI TTSAA 6 cut(s) 22, 531, 699, 1112, 1172, 1254
AjnI CCWGG 4 cut(s) 105, 486, 876, 1223
AjuI GAANNNNNNNTTGG 2 cut(s) 1138, 1170
AleI CACNNNNGTG 1 cut(s) 419
AluBI AGCT 9 cut(s) 377, 680, 941, 963, 1010, 1149, 1188, 1220, 1250
AluI AGCT 9 cut(s) 377, 680, 941, 963, 1010, 1149, 1188, 1220, 1250
Alw21I GWGCWC 2 cut(s) 652, 722
Alw26I GTCTC 2 cut(s) 86, 578
AlwI GGATC 1 cut(s) 116
AoxI GGCC 3 cut(s) 609, 951, 1226
ApeKI GCWGC 6 cut(s) 443, 680, 1022, 1247, 1292, 1295
ApoI RAATTY 2 cut(s) 59, 575
ArsI GACNNNNNNTTYG 2 cut(s) 768, 800
Asp700I GAANNNNTTC 1 cut(s) 694
AspLEI GCGC 3 cut(s) 226, 511, 1366
AspS9I GGNCC 2 cut(s) 73, 1227
AsuHPI GGTGA 1 cut(s) 207
AvaII GGWCC 1 cut(s) 73
BaeGI GKGCMC 1 cut(s) 106
BanI GGYRCC 2 cut(s) 101, 223
BbsI GAAGAC 1 cut(s) 874
Bbv12I GWGCWC 2 cut(s) 652, 722
BbvI GCAGC 6 cut(s) 430, 667, 1009, 1259, 1304, 1307
BccI CCATC 1 cut(s) 566
BceAI ACGGC 3 cut(s) 175, 456, 966
BciT130I CCWGG 4 cut(s) 107, 488, 878, 1225
BciVI GTATCC 1 cut(s) 586
BclI TGATCA 1 cut(s) 748
BcoDI GTCTC 2 cut(s) 86, 578
BfmI CTRYAG 1 cut(s) 1290
BfoI RGCGCY 2 cut(s) 227, 1367
BfuI GTATCC 1 cut(s) 586
BglII AGATCT 1 cut(s) 535
BisI GCNGC 8 cut(s) 180, 444, 612, 681, 1023, 1248, 1293, 1296
BlsI GCNGC 8 cut(s) 181, 445, 613, 682, 1024, 1249, 1294, 1297
Bme1390I CCNGG 4 cut(s) 107, 488, 878, 1225
Bme18I GGWCC 1 cut(s) 73
BmgT120I GGNCC 2 cut(s) 73, 1227
BmiI GGNNCC 3 cut(s) 103, 183, 225
BmrFI CCNGG 4 cut(s) 107, 488, 878, 1225
BmrI ACTGGG 1 cut(s) 1040
BmsI GCATC 7 cut(s) 535, 557, 1034, 1136, 1150, 1307, 1323
BmuI ACTGGG 1 cut(s) 1040
BoxI GACNNNNGTC 1 cut(s) 729
BpiI GAAGAC 1 cut(s) 874
Bpu10I CCTNAGC 1 cut(s) 186
BpuEI CTTGAG 2 cut(s) 1079, 1224
BsaHI GRCGYC 1 cut(s) 224
BsaJI CCNNGG 7 cut(s) 105, 177, 487, 825, 876, 954, 1223
BsaWI WCCGGW 1 cut(s) 98
BsaXI ACNNNNNCTCC 2 cut(s) 166, 196
Bsc4I CCNNNNNNNGG 2 cut(s) 178, 370
Bse1I ACTGG 2 cut(s) 405, 1035
Bse3DI GCAATG 2 cut(s) 338, 1365
BseBI CCWGG 4 cut(s) 107, 488, 878, 1225
BseDI CCNNGG 7 cut(s) 105, 177, 487, 825, 876, 954, 1223
BseGI GGATG 3 cut(s) 925, 1139, 1165
BseLI CCNNNNNNNGG 2 cut(s) 178, 370
BseMI GCAATG 2 cut(s) 338, 1365
BseMII CTCAG 2 cut(s) 279, 534
BseNI ACTGG 2 cut(s) 405, 1035
BseRI GAGGAG 1 cut(s) 596
BseSI GKGCMC 1 cut(s) 106
BseXI GCAGC 6 cut(s) 430, 667, 1009, 1259, 1304, 1307
BsgI GTGCAG 1 cut(s) 1266
Bsh1236I CGCG 1 cut(s) 179
Bsh1285I CGRYCG 1 cut(s) 309
BshFI GGCC 3 cut(s) 611, 953, 1228
BshNI GGYRCC 2 cut(s) 101, 223
BsiEI CGRYCG 1 cut(s) 309
BsiHKAI GWGCWC 2 cut(s) 652, 722
BsiSI CCGG 1 cut(s) 99
BslFI GGGAC 2 cut(s) 451, 855
BslI CCNNNNNNNGG 2 cut(s) 178, 370
BsmAI GTCTC 2 cut(s) 86, 578
BsmFI GGGAC 2 cut(s) 451, 855
BsmI GAATGC 2 cut(s) 647, 670
BsnI GGCC 3 cut(s) 611, 953, 1228
Bsp1286I GDGCHC 3 cut(s) 106, 652, 722
Bsp1407I TGTACA 1 cut(s) 1071
Bsp143I GATC 6 cut(s) 121, 165, 535, 709, 748, 1198
Bsp19I CCATGG 1 cut(s) 954
BspACI CCGC 4 cut(s) 177, 179, 309, 612
BspANI GGCC 3 cut(s) 611, 953, 1228
BspCNI CTCAG 2 cut(s) 280, 533
BspFNI CGCG 1 cut(s) 179
BspLI GGNNCC 3 cut(s) 103, 183, 225
BspMAI CTGCAG 1 cut(s) 1294
BspPI GGATC 1 cut(s) 116
BspT107I GGYRCC 2 cut(s) 101, 223
BsrDI GCAATG 2 cut(s) 338, 1365
BsrGI TGTACA 1 cut(s) 1071
BsrI ACTGG 2 cut(s) 405, 1035
BssECI CCNNGG 7 cut(s) 105, 177, 487, 825, 876, 954, 1223
BssMI GATC 6 cut(s) 121, 165, 535, 709, 748, 1198
BssNI GRCGYC 1 cut(s) 224
BssT1I CCWWGG 2 cut(s) 825, 954
Bst2UI CCWGG 4 cut(s) 107, 488, 878, 1225
Bst4CI ACNGT 4 cut(s) 244, 369, 589, 728
Bst6I CTCTTC 1 cut(s) 1240
BstACI GRCGYC 1 cut(s) 224
BstAPI GCANNNNNTGC 1 cut(s) 1289
BstAUI TGTACA 1 cut(s) 1071
BstC8I GCNNGC 6 cut(s) 345, 426, 794, 798, 1008, 1151
BstDEI CTNAG 4 cut(s) 186, 288, 520, 836
BstDSI CCRYGG 2 cut(s) 177, 954
BstF5I GGATG 3 cut(s) 925, 1139, 1165
BstFNI CGCG 1 cut(s) 179
BstH2I RGCGCY 2 cut(s) 227, 1367
BstHHI GCGC 3 cut(s) 226, 511, 1366
BstKTI GATC 6 cut(s) 124, 168, 538, 712, 751, 1201
BstMAI GTCTC 2 cut(s) 86, 578
BstMBI GATC 6 cut(s) 121, 165, 535, 709, 748, 1198
BstMCI CGRYCG 1 cut(s) 309
BstMWI GCNNNNNNNGC 4 cut(s) 1150, 1289, 1301, 1342
BstNI CCWGG 4 cut(s) 107, 488, 878, 1225
BstNSI RCATGY 4 cut(s) 157, 660, 902, 1260
BstPAI GACNNNNGTC 1 cut(s) 729
BstSCI CCNGG 4 cut(s) 105, 486, 876, 1223
BstSFI CTRYAG 1 cut(s) 1290
BstSLI GKGCMC 1 cut(s) 106
BstUI CGCG 1 cut(s) 179
BstV1I GCAGC 6 cut(s) 430, 667, 1009, 1259, 1304, 1307
BstV2I GAAGAC 1 cut(s) 874
BstX2I RGATCY 2 cut(s) 121, 535
BstXI CCANNNNNNTGG 2 cut(s) 607, 1224
BstYI RGATCY 2 cut(s) 121, 535
BsuI GTATCC 1 cut(s) 586
BsuRI GGCC 3 cut(s) 611, 953, 1228
BtgI CCRYGG 2 cut(s) 177, 954
BtsCI GGATG 3 cut(s) 925, 1139, 1165
BtsI GCAGTG 1 cut(s) 279
BtsIMutI CAGTG 4 cut(s) 279, 540, 594, 1028
Cac8I GCNNGC 6 cut(s) 345, 426, 794, 798, 1008, 1151
CfoI GCGC 3 cut(s) 226, 511, 1366
Cfr13I GGNCC 2 cut(s) 73, 1227
Cfr42I CCGCGG 1 cut(s) 180
Csp6I GTAC 3 cut(s) 303, 948, 1072
CviQI GTAC 3 cut(s) 303, 948, 1072
DdeI CTNAG 4 cut(s) 186, 288, 520, 836
DinI GGCGCC 1 cut(s) 225
DpnI GATC 6 cut(s) 123, 167, 537, 711, 750, 1200
DpnII GATC 6 cut(s) 121, 165, 535, 709, 748, 1198
DraI TTTAAA 2 cut(s) 57, 432
EaeI YGGCCR 2 cut(s) 609, 951
Eam1104I CTCTTC 1 cut(s) 1240
EarI CTCTTC 1 cut(s) 1240
Eco130I CCWWGG 2 cut(s) 825, 954
Eco47I GGWCC 1 cut(s) 73
EcoRII CCWGG 4 cut(s) 105, 486, 876, 1223
EcoT14I CCWWGG 2 cut(s) 825, 954
EcoT22I ATGCAT 1 cut(s) 550
EgeI GGCGCC 1 cut(s) 225
EheI GGCGCC 1 cut(s) 225
ErhI CCWWGG 2 cut(s) 825, 954
FalI AAGNNNNNCTT 4 cut(s) 679, 711, 1138, 1170
FaqI GGGAC 2 cut(s) 451, 855
FbaI TGATCA 1 cut(s) 748
Fnu4HI GCNGC 8 cut(s) 180, 444, 612, 681, 1023, 1248, 1293, 1296
FokI GGATG 3 cut(s) 932, 1146, 1172
Fsp4HI GCNGC 8 cut(s) 180, 444, 612, 681, 1023, 1248, 1293, 1296
FspI TGCGCA 1 cut(s) 510
GlaI GCGC 3 cut(s) 225, 510, 1365
GluI GCNGC 8 cut(s) 180, 444, 612, 681, 1023, 1248, 1293, 1296
HaeII RGCGCY 2 cut(s) 227, 1367
HaeIII GGCC 3 cut(s) 611, 953, 1228
HapII CCGG 1 cut(s) 99
HhaI GCGC 3 cut(s) 226, 511, 1366
Hin1I GRCGYC 1 cut(s) 224
Hin6I GCGC 3 cut(s) 224, 509, 1364
HinP1I GCGC 3 cut(s) 224, 509, 1364
HindIII AAGCTT 2 cut(s) 1008, 1147
HinfI GANTC 3 cut(s) 762, 843, 1276
HpaII CCGG 1 cut(s) 99
HphI GGTGA 1 cut(s) 207
Hpy166II GTNNAC 2 cut(s) 806, 1072
Hpy188I TCNGA 6 cut(s) 289, 463, 663, 709, 1159, 1203
Hpy188III TCNNGA 5 cut(s) 22, 130, 258, 1131, 1273
Hpy8I GTNNAC 2 cut(s) 806, 1072
HpyAV CCTTC 6 cut(s) 212, 222, 797, 825, 1118, 1164
HpyCH4III ACNGT 4 cut(s) 244, 369, 589, 728
HpyCH4IV ACGT 1 cut(s) 351
HpyF10VI GCNNNNNNNGC 4 cut(s) 1150, 1289, 1301, 1342
HpyF3I CTNAG 4 cut(s) 186, 288, 520, 836
HpySE526I ACGT 1 cut(s) 351
Hsp92I GRCGYC 1 cut(s) 224
HspAI GCGC 3 cut(s) 224, 509, 1364
KasI GGCGCC 1 cut(s) 223
Ksp22I TGATCA 1 cut(s) 748
KspI CCGCGG 1 cut(s) 180
Kzo9I GATC 6 cut(s) 121, 165, 535, 709, 748, 1198
LmnI GCTCC 4 cut(s) 187, 214, 1225, 1244
Lsp1109I GCAGC 6 cut(s) 430, 667, 1009, 1259, 1304, 1307
LweI GCATC 7 cut(s) 535, 557, 1034, 1136, 1150, 1307, 1323
MaeII ACGT 1 cut(s) 351
MaeIII GTNAC 2 cut(s) 156, 568
MalI GATC 6 cut(s) 123, 167, 537, 711, 750, 1200
MboI GATC 6 cut(s) 121, 165, 535, 709, 748, 1198
MboII GAAGA 9 cut(s) 37, 40, 43, 46, 158, 188, 634, 874, 1227
MfeI CAATTG 1 cut(s) 312
MflI RGATCY 2 cut(s) 121, 535
MhlI GDGCHC 3 cut(s) 106, 652, 722
MluCI AATT 7 cut(s) 59, 135, 312, 575, 690, 850, 1315
Mly113I GGCGCC 1 cut(s) 224
MlyI GAGTC 2 cut(s) 771, 837
MmeI TCCRAC 2 cut(s) 351, 1096
MnlI CCTC 5 cut(s) 86, 401, 574, 1103, 1243
Mph1103I ATGCAT 1 cut(s) 550
MroXI GAANNNNTTC 1 cut(s) 694
MseI TTAA 5 cut(s) 56, 431, 468, 861, 1043
MslI CAYNNNNRTG 2 cut(s) 419, 1132
MspA1I CMGCKG 1 cut(s) 179
MspI CCGG 1 cut(s) 99
MspR9I CCNGG 4 cut(s) 107, 488, 878, 1225
MunI CAATTG 1 cut(s) 312
Mva1269I GAATGC 2 cut(s) 647, 670
MvaI CCWGG 4 cut(s) 107, 488, 878, 1225
MvnI CGCG 1 cut(s) 179
MwoI GCNNNNNNNGC 4 cut(s) 1150, 1289, 1301, 1342
NarI GGCGCC 1 cut(s) 224
NcoI CCATGG 1 cut(s) 954
NdeII GATC 6 cut(s) 121, 165, 535, 709, 748, 1198
NlaIV GGNNCC 3 cut(s) 103, 183, 225
NmeAIII GCCGAG 1 cut(s) 888
NsbI TGCGCA 1 cut(s) 510
NsiI ATGCAT 1 cut(s) 550
NspI RCATGY 4 cut(s) 157, 660, 902, 1260
OliI CACNNNNGTG 1 cut(s) 419
PciI ACATGT 2 cut(s) 656, 898
PctI GAATGC 2 cut(s) 647, 670
PdmI GAANNNNTTC 1 cut(s) 694
PfeI GAWTC 1 cut(s) 1276
PkrI GCNGC 8 cut(s) 181, 445, 613, 682, 1024, 1249, 1294, 1297
PleI GAGTC 2 cut(s) 770, 837
PluTI GGCGCC 1 cut(s) 227
PpsI GAGTC 2 cut(s) 770, 837
PscI ACATGT 2 cut(s) 656, 898
PshAI GACNNNNGTC 1 cut(s) 729
Psp1406I AACGTT 1 cut(s) 351
Psp6I CCWGG 4 cut(s) 105, 486, 876, 1223
PspGI CCWGG 4 cut(s) 105, 486, 876, 1223
PspN4I GGNNCC 3 cut(s) 103, 183, 225
PspPI GGNCC 2 cut(s) 73, 1227
PstI CTGCAG 1 cut(s) 1294
PsuI RGATCY 2 cut(s) 121, 535
RsaI GTAC 3 cut(s) 304, 949, 1073
RsaNI GTAC 3 cut(s) 303, 948, 1072
RseI CAYNNNNRTG 2 cut(s) 419, 1132
SacII CCGCGG 1 cut(s) 180
SaqAI TTAA 5 cut(s) 56, 431, 468, 861, 1043
SatI GCNGC 8 cut(s) 180, 444, 612, 681, 1023, 1248, 1293, 1296
Sau3AI GATC 6 cut(s) 121, 165, 535, 709, 748, 1198
Sau96I GGNCC 2 cut(s) 73, 1227
SchI GAGTC 2 cut(s) 771, 837
ScrFI CCNGG 4 cut(s) 107, 488, 878, 1225
SduI GDGCHC 3 cut(s) 106, 652, 722
SfaNI GCATC 7 cut(s) 535, 557, 1034, 1136, 1150, 1307, 1323
SfcI CTRYAG 1 cut(s) 1290
SfoI GGCGCC 1 cut(s) 225
Sfr303I CCGCGG 1 cut(s) 180
SgrBI CCGCGG 1 cut(s) 180
SinI GGWCC 1 cut(s) 73
SmiMI CAYNNNNRTG 2 cut(s) 419, 1132
SmlI CTYRAG 2 cut(s) 1094, 1239
SmoI CTYRAG 2 cut(s) 1094, 1239
Sse9I AATT 7 cut(s) 59, 135, 312, 575, 690, 850, 1315
SsiI CCGC 4 cut(s) 177, 179, 309, 612
SspDI GGCGCC 1 cut(s) 223
SspI AATATT 4 cut(s) 452, 781, 1057, 1167
StyD4I CCNGG 4 cut(s) 105, 486, 876, 1223
StyI CCWWGG 2 cut(s) 825, 954
TaaI ACNGT 4 cut(s) 244, 369, 589, 728
TaiI ACGT 1 cut(s) 354
TaqII GACCGA 1 cut(s) 386
TasI AATT 7 cut(s) 59, 135, 312, 575, 690, 850, 1315
TatI WGTACW 1 cut(s) 1071
TauI GCSGC 2 cut(s) 182, 614
TfiI GAWTC 1 cut(s) 1276
Tru1I TTAA 5 cut(s) 56, 431, 468, 861, 1043
Tru9I TTAA 5 cut(s) 56, 431, 468, 861, 1043
TscAI CASTG 4 cut(s) 286, 547, 594, 1035
TseI GCWGC 6 cut(s) 443, 680, 1022, 1247, 1292, 1295
TspDTI ATGAA 5 cut(s) 17, 908, 982, 1052, 1366
TspRI CASTG 4 cut(s) 286, 547, 594, 1035
VpaK11BI GGWCC 1 cut(s) 73
XapI RAATTY 2 cut(s) 59, 575
XceI RCATGY 4 cut(s) 157, 660, 902, 1260
XmnI GAANNNNTTC 1 cut(s) 694
Zsp2I ATGCAT 1 cut(s) 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.