Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0007201

Physical Location & Seq

Genomic Coordinates Reverse (-)

40215133 .. 40219908

Gene Structure 4776 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1320400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGGCGTCTCTGAAGCTCACTGCCCATGTCTTTATCCTGTTCCTGAGTCTCCATGTATGTTGTTGCAGCACCATAGATTATCCTAAAGATCCAGTCTTGTCGTTTAAACAAAAAGATTCTATGTTACCAATGATCTCTCCTACTGTGACTCCTCAACCCTTTCTTCCCCTTCTTGCTCCTTCACCATTGGCACCATATACTAATACCACCGTCCCAAAATTATCAGGACTCTGTAGGCTAAACTTCAGTGTTGCTGAGAGTTTGATGACTGTGACCTCAATTGATTGCTGGTCCGTTTTTGCACCATTGCTAGCTAATGTTATGTGTTGTCCACAGTTGAAAGCCACTCTCACAATTCTCATTGGTCAATCCAGTAAAGAGACCAATGTTCTGGCTTTAAATGGGACAACTGCTAAACACTGCCTATCGGATATCGAGCAGATTTTGGTGGCCCAGGGTGCAAATGATAGTCTTGCACGATTATGCTCAGTTCATTCATCAAATCTGACTGGTGCATCTTGCCCAGTCATTGGTGTTAATGAGTTTGAGGATACAGTTGATACTTCCAAGTTGCTTGCTGCTTGTGAGAAGATTGACCCTGTGAAGGAATGCTGTGCTCAAACGTGTGAGAATGCTATATTAGAAGCTGCTACAAGGATTGCATCAAAAGCTTCTGATGTTTTGAGCACAGATGGTGCTCATGATCTCTTACCTGATAGATCAAGTAAAGTCAATGGCTGCAAAAGTATTGTCCTCCGATGGCTGGCAAGGAAACTCAGTCCTTCTCGTGCCAAGGAAGTTCTAAGGGGACTGTCTAATTGCAAGATTAACAAGGCTTGTCCCCTGGTTTTCCCTGACATGAAGCATGTTGCAACGGGTTGTGGGAATGGGATAAGTAACCGGACTGCATGTTGTACTGCCATGGAGAGCTATGTGGCCCACTTGCAAAAGCAGAGTTTAATAACCAACTTGCAAGCTTTGGATTGTGCTGCATCACTGGGAATGAAGTTACGAAAATCAAATATTACCGAAAATGTGTATAGCCTATGTCATATAAGCCTGAAGGATTTCTCGCTTCAAGTTGGAAATCAAGTGTCTGGATGTCTTTTGCCAAGCCTGCCTTCCGATGCCACATTTGACAGTTCAGGTGTCAGCTTCCTTTGTGATCTGAATGATAACATTCCAGCTCCCTGGCCCACCTCTCAAGGGGCAGCTTCATCTTGCAGTAAACATGTCAAGATTCCTGCACTTCCTGCAGCAGCATCTGCTGAAAGTGGTCTATACCATGATGGTGTGATGCTTTCTCTACTCCTCGCTTCCGCCATGGTTCTTATGACGCTTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

449

Amino Acids

47.56

Weight (kDa)

7.4

Isoelectric Point (pI)

45.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPARK	PF19160	75 - 225	1.5e-22	SPARK
At1g61900	PF26584	278 - 351	4.3e-37	At1g61900-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61900 AT1G61900 AT1G61900
fragaria_vesca	FvH4_3g02240 FvH4_3g02240 FvH4_3g02240
malus_domestica	MD10G1320400.v1.1
prunus_persica	Prupe.4G021700_v2.0.a1 Prupe.4G021700_v2.0.a1
pyrus_communis	pycom05g31400 pycom10g27110
rosa_chinensis	RchiOBHm_Chr5g0003311
rosa_laevigata	RLG00000031123
rosa_multiflora	Rmu_sc0006842.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072660
rosa_rugosa	Rorug04G0402500 Rorug04G0402500 Rorug04G0402600
rosa_samantha	Rh5AG028700 Rh5BG028800 Rh5CG031100 Rh5DG029300
rosa_wichuraiana	Rw0G014050 Rw5G002670 Rw5G002720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	190
AccB7I	CCANNNNNTGG	1 cut(s)	530
AciI	CCGC	1 cut(s)	1320
AclWI	GGATC	1 cut(s)	83
AcuI	CTGAAG	3 cut(s)	32, 229, 1082
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	916
AfiI	CCNNNNNNNGG	4 cut(s)	530, 604, 763, 1206
AflIII	ACRYGT	2 cut(s)	623, 1231
AgsI	TTSAA	2 cut(s)	340, 1079
AjnI	CCWGG	3 cut(s)	453, 843, 1190
AjuI	GAANNNNNNNTTGG	2 cut(s)	1105, 1137
AluBI	AGCT	9 cut(s)	16, 314, 647, 671, 930, 977, 1155, 1187, 1214
AluI	AGCT	9 cut(s)	16, 314, 647, 671, 930, 977, 1155, 1187, 1214
Alw21I	GWGCWC	3 cut(s)	619, 689, 700
Alw26I	GTCTC	3 cut(s)	12, 53, 374
AlwI	GGATC	1 cut(s)	83
AlwNI	CAGNNNCTG	1 cut(s)	1265
AoxI	GGCC	3 cut(s)	450, 936, 1193
ApeKI	GCWGC	8 cut(s)	66, 578, 647, 738, 989, 1211, 1256, 1259
ArsI	GACNNNNNNTTYG	2 cut(s)	735, 767
Asp700I	GAANNNNTTC	1 cut(s)	1067
AspS9I	GGNCC	4 cut(s)	291, 451, 937, 1194
AsuHPI	GGTGA	1 cut(s)	174
AsuNHI	GCTAGC	1 cut(s)	310
AvaII	GGWCC	1 cut(s)	291
BanI	GGYRCC	1 cut(s)	190
BauI	CACGAG	1 cut(s)	786
Bbv12I	GWGCWC	3 cut(s)	619, 689, 700
BbvI	GCAGC	8 cut(s)	78, 565, 634, 725, 976, 1223, 1268, 1271
BccI	CCATC	3 cut(s)	686, 753, 1283
BciT130I	CCWGG	3 cut(s)	455, 845, 1192
BciVI	GTATCC	1 cut(s)	544
BcoDI	GTCTC	3 cut(s)	12, 53, 374
BfaI	CTAG	1 cut(s)	311
BfmI	CTRYAG	2 cut(s)	232, 1254
BfuI	GTATCC	1 cut(s)	544
BisI	GCNGC	8 cut(s)	67, 579, 648, 739, 990, 1212, 1257, 1260
BlsI	GCNGC	8 cut(s)	68, 580, 649, 740, 991, 1213, 1258, 1261
Bme1390I	CCNGG	3 cut(s)	455, 845, 1192
Bme18I	GGWCC	1 cut(s)	291
BmgT120I	GGNCC	4 cut(s)	291, 451, 937, 1194
BmiI	GGNNCC	1 cut(s)	192
BmrFI	CCNGG	3 cut(s)	455, 845, 1192
BmrI	ACTGGG	2 cut(s)	518, 1007
BmsI	GCATC	6 cut(s)	524, 671, 1001, 1117, 1271, 1287
BmtI	GCTAGC	1 cut(s)	314
BmuI	ACTGGG	2 cut(s)	518, 1007
BpuEI	CTTGAG	1 cut(s)	1188
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	374
BsaJI	CCNNGG	7 cut(s)	453, 454, 792, 843, 921, 1190, 1323
BsaWI	WCCGGW	1 cut(s)	900
BsaXI	ACNNNNNCTCC	2 cut(s)	133, 163
Bsc4I	CCNNNNNNNGG	4 cut(s)	530, 604, 763, 1206
Bse1I	ACTGG	5 cut(s)	92, 372, 514, 524, 1002
Bse3DI	GCAATG	1 cut(s)	305
BseBI	CCWGG	3 cut(s)	455, 845, 1192
BseDI	CCNNGG	7 cut(s)	453, 454, 792, 843, 921, 1190, 1323
BseGI	GGATG	1 cut(s)	1106
BseLI	CCNNNNNNNGG	4 cut(s)	530, 604, 763, 1206
BseMI	GCAATG	1 cut(s)	305
BseMII	CTCAG	4 cut(s)	35, 246, 501, 790
BseNI	ACTGG	5 cut(s)	92, 372, 514, 524, 1002
BseRI	GAGGAG	2 cut(s)	141, 1301
BseXI	GCAGC	8 cut(s)	78, 565, 634, 725, 976, 1223, 1268, 1271
BsgI	GTGCAG	1 cut(s)	1230
BshFI	GGCC	3 cut(s)	452, 938, 1195
BshNI	GGYRCC	1 cut(s)	190
BsiHKAI	GWGCWC	3 cut(s)	619, 689, 700
BsiSI	CCGG	1 cut(s)	901
BslFI	GGGAC	4 cut(s)	197, 418, 822, 825
BslI	CCNNNNNNNGG	4 cut(s)	530, 604, 763, 1206
BsmAI	GTCTC	3 cut(s)	12, 53, 374
BsmBI	CGTCTC	1 cut(s)	12
BsmFI	GGGAC	4 cut(s)	197, 418, 822, 825
BsmI	GAATGC	2 cut(s)	614, 637
BsnI	GGCC	3 cut(s)	452, 938, 1195
Bso31I	GGTCTC	1 cut(s)	374
Bsp1286I	GDGCHC	3 cut(s)	619, 689, 700
Bsp143I	GATC	5 cut(s)	88, 132, 703, 719, 1165
Bsp19I	CCATGG	2 cut(s)	921, 1323
BspACI	CCGC	1 cut(s)	1320
BspANI	GGCC	3 cut(s)	452, 938, 1195
BspCNI	CTCAG	4 cut(s)	36, 247, 500, 789
BspHI	TCATGA	1 cut(s)	700
BspLI	GGNNCC	1 cut(s)	192
BspMAI	CTGCAG	1 cut(s)	1258
BspOI	GCTAGC	1 cut(s)	314
BspPI	GGATC	1 cut(s)	83
BspT107I	GGYRCC	1 cut(s)	190
BspTNI	GGTCTC	1 cut(s)	374
BsrDI	GCAATG	1 cut(s)	305
BsrI	ACTGG	5 cut(s)	92, 372, 514, 524, 1002
BssECI	CCNNGG	7 cut(s)	453, 454, 792, 843, 921, 1190, 1323
BssMI	GATC	5 cut(s)	88, 132, 703, 719, 1165
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	786
BssT1I	CCWWGG	3 cut(s)	792, 921, 1323
Bst2BI	CACGAG	1 cut(s)	786
Bst2UI	CCWGG	3 cut(s)	455, 845, 1192
Bst4CI	ACNGT	7 cut(s)	145, 211, 271, 336, 556, 813, 1142
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	2 cut(s)	1253, 1265
BstC8I	GCNNGC	5 cut(s)	312, 576, 765, 975, 1118
BstDEI	CTNAG	5 cut(s)	44, 255, 487, 776, 803
BstDSI	CCRYGG	2 cut(s)	921, 1323
BstF5I	GGATG	1 cut(s)	1106
BstKTI	GATC	5 cut(s)	91, 135, 706, 722, 1168
BstMAI	GTCTC	3 cut(s)	12, 53, 374
BstMBI	GATC	5 cut(s)	88, 132, 703, 719, 1165
BstMWI	GCNNNNNNNGC	5 cut(s)	458, 668, 1117, 1253, 1265
BstNI	CCWGG	3 cut(s)	455, 845, 1192
BstNSI	RCATGY	3 cut(s)	869, 912, 1235
BstSCI	CCNGG	3 cut(s)	453, 843, 1190
BstSFI	CTRYAG	2 cut(s)	232, 1254
BstV1I	GCAGC	8 cut(s)	78, 565, 634, 725, 976, 1223, 1268, 1271
BstX2I	RGATCY	1 cut(s)	88
BstXI	CCANNNNNNTGG	2 cut(s)	391, 1191
BstYI	RGATCY	1 cut(s)	88
BsuI	GTATCC	1 cut(s)	544
BsuRI	GGCC	3 cut(s)	452, 938, 1195
BtgI	CCRYGG	2 cut(s)	921, 1323
BtsCI	GGATG	1 cut(s)	1106
BtsI	GCAGTG	2 cut(s)	18, 418
BtsIMutI	CAGTG	4 cut(s)	18, 253, 418, 995
Cac8I	GCNNGC	5 cut(s)	312, 576, 765, 975, 1118
CaiI	CAGNNNCTG	1 cut(s)	1265
CciI	TCATGA	1 cut(s)	700
Cfr13I	GGNCC	4 cut(s)	291, 451, 937, 1194
Csp6I	GTAC	1 cut(s)	915
CviQI	GTAC	1 cut(s)	915
DdeI	CTNAG	5 cut(s)	44, 255, 487, 776, 803
DpnI	GATC	5 cut(s)	90, 134, 705, 721, 1167
DpnII	GATC	5 cut(s)	88, 132, 703, 719, 1165
DraI	TTTAAA	2 cut(s)	106, 399
EciI	GGCGGA	1 cut(s)	1309
Eco130I	CCWWGG	3 cut(s)	792, 921, 1323
Eco31I	GGTCTC	1 cut(s)	374
Eco32I	GATATC	1 cut(s)	433
Eco47I	GGWCC	1 cut(s)	291
Eco57I	CTGAAG	3 cut(s)	32, 229, 1082
EcoRII	CCWGG	3 cut(s)	453, 843, 1190
EcoRV	GATATC	1 cut(s)	433
EcoT14I	CCWWGG	3 cut(s)	792, 921, 1323
ErhI	CCWWGG	3 cut(s)	792, 921, 1323
Esp3I	CGTCTC	1 cut(s)	12
FalI	AAGNNNNNCTT	2 cut(s)	1105, 1137
FaqI	GGGAC	4 cut(s)	197, 418, 822, 825
Fnu4HI	GCNGC	8 cut(s)	67, 579, 648, 739, 990, 1212, 1257, 1260
FokI	GGATG	1 cut(s)	1113
Fsp4HI	GCNGC	8 cut(s)	67, 579, 648, 739, 990, 1212, 1257, 1260
FspBI	CTAG	1 cut(s)	311
GluI	GCNGC	8 cut(s)	67, 579, 648, 739, 990, 1212, 1257, 1260
HaeIII	GGCC	3 cut(s)	452, 938, 1195
HapII	CCGG	1 cut(s)	901
Hin1I	GRCGYC	1 cut(s)	5
HindIII	AAGCTT	2 cut(s)	669, 975
HinfI	GANTC	5 cut(s)	46, 116, 148, 228, 1240
HpaII	CCGG	1 cut(s)	901
HphI	GGTGA	1 cut(s)	174
Hpy166II	GTNNAC	2 cut(s)	332, 1229
Hpy188I	TCNGA	7 cut(s)	12, 430, 507, 676, 758, 1126, 1170
Hpy188III	TCNNGA	5 cut(s)	43, 225, 701, 1098, 1237
Hpy8I	GTNNAC	2 cut(s)	332, 1229
HpyAV	CCTTC	6 cut(s)	179, 189, 598, 792, 1057, 1131
HpyCH4III	ACNGT	7 cut(s)	145, 211, 271, 336, 556, 813, 1142
HpyCH4IV	ACGT	1 cut(s)	623
HpyF10VI	GCNNNNNNNGC	5 cut(s)	458, 668, 1117, 1253, 1265
HpyF3I	CTNAG	5 cut(s)	44, 255, 487, 776, 803
HpySE526I	ACGT	1 cut(s)	623
Hsp92I	GRCGYC	1 cut(s)	5
Kzo9I	GATC	5 cut(s)	88, 132, 703, 719, 1165
LmnI	GCTCC	2 cut(s)	181, 1192
Lsp1109I	GCAGC	8 cut(s)	78, 565, 634, 725, 976, 1223, 1268, 1271
LweI	GCATC	6 cut(s)	524, 671, 1001, 1117, 1271, 1287
MaeI	CTAG	1 cut(s)	311
MaeII	ACGT	1 cut(s)	623
MaeIII	GTNAC	5 cut(s)	123, 145, 271, 896, 1008
MalI	GATC	5 cut(s)	90, 134, 705, 721, 1167
MboI	GATC	5 cut(s)	88, 132, 703, 719, 1165
MboII	GAAGA	2 cut(s)	155, 601
MfeI	CAATTG	1 cut(s)	279
MflI	RGATCY	1 cut(s)	88
MhlI	GDGCHC	3 cut(s)	619, 689, 700
MluCI	AATT	4 cut(s)	218, 279, 354, 817
MlyI	GAGTC	3 cut(s)	55, 142, 222
MmeI	TCCRAC	1 cut(s)	1063
MnlI	CCTC	6 cut(s)	162, 286, 541, 764, 1210, 1322
MroXI	GAANNNNTTC	1 cut(s)	1067
MseI	TTAA	5 cut(s)	105, 398, 537, 828, 959
MslI	CAYNNNNRTG	2 cut(s)	481, 1290
MspI	CCGG	1 cut(s)	901
MspR9I	CCNGG	3 cut(s)	455, 845, 1192
MssI	GTTTAAAC	1 cut(s)	106
MunI	CAATTG	1 cut(s)	279
Mva1269I	GAATGC	2 cut(s)	614, 637
MvaI	CCWGG	3 cut(s)	455, 845, 1192
MwoI	GCNNNNNNNGC	5 cut(s)	458, 668, 1117, 1253, 1265
NcoI	CCATGG	2 cut(s)	921, 1323
NdeII	GATC	5 cut(s)	88, 132, 703, 719, 1165
NheI	GCTAGC	1 cut(s)	310
NlaIV	GGNNCC	1 cut(s)	192
NmuCI	GTSAC	2 cut(s)	145, 271
NspI	RCATGY	3 cut(s)	869, 912, 1235
PagI	TCATGA	1 cut(s)	700
PasI	CCCWGGG	1 cut(s)	454
PciI	ACATGT	1 cut(s)	1231
PctI	GAATGC	2 cut(s)	614, 637
PdmI	GAANNNNTTC	1 cut(s)	1067
PfeI	GAWTC	2 cut(s)	116, 1240
PflMI	CCANNNNNTGG	1 cut(s)	530
PkrI	GCNGC	8 cut(s)	68, 580, 649, 740, 991, 1213, 1258, 1261
PleI	GAGTC	3 cut(s)	54, 142, 222
PmeI	GTTTAAAC	1 cut(s)	106
PpsI	GAGTC	3 cut(s)	54, 142, 222
PscI	ACATGT	1 cut(s)	1231
Psp6I	CCWGG	3 cut(s)	453, 843, 1190
PspGI	CCWGG	3 cut(s)	453, 843, 1190
PspN4I	GGNNCC	1 cut(s)	192
PspPI	GGNCC	4 cut(s)	291, 451, 937, 1194
PstI	CTGCAG	1 cut(s)	1258
PstNI	CAGNNNCTG	1 cut(s)	1265
PsuI	RGATCY	1 cut(s)	88
RsaI	GTAC	1 cut(s)	916
RsaNI	GTAC	1 cut(s)	915
RseI	CAYNNNNRTG	2 cut(s)	481, 1290
SaqAI	TTAA	5 cut(s)	105, 398, 537, 828, 959
SatI	GCNGC	8 cut(s)	67, 579, 648, 739, 990, 1212, 1257, 1260
Sau3AI	GATC	5 cut(s)	88, 132, 703, 719, 1165
Sau96I	GGNCC	4 cut(s)	291, 451, 937, 1194
SchI	GAGTC	3 cut(s)	55, 142, 222
ScrFI	CCNGG	3 cut(s)	455, 845, 1192
SduI	GDGCHC	3 cut(s)	619, 689, 700
SfaNI	GCATC	6 cut(s)	524, 671, 1001, 1117, 1271, 1287
SfcI	CTRYAG	2 cut(s)	232, 1254
SinI	GGWCC	1 cut(s)	291
SmiMI	CAYNNNNRTG	2 cut(s)	481, 1290
SmlI	CTYRAG	1 cut(s)	1203
SmoI	CTYRAG	1 cut(s)	1203
Sse9I	AATT	4 cut(s)	218, 279, 354, 817
SsiI	CCGC	1 cut(s)	1320
SspI	AATATT	1 cut(s)	1024
SspMI	CTAG	1 cut(s)	311
StyD4I	CCNGG	3 cut(s)	453, 843, 1190
StyI	CCWWGG	3 cut(s)	792, 921, 1323
TaaI	ACNGT	7 cut(s)	145, 211, 271, 336, 556, 813, 1142
TaiI	ACGT	1 cut(s)	626
TaqI	TCGA	1 cut(s)	435
TasI	AATT	4 cut(s)	218, 279, 354, 817
TatI	WGTACW	1 cut(s)	914
TfiI	GAWTC	2 cut(s)	116, 1240
Tru1I	TTAA	5 cut(s)	105, 398, 537, 828, 959
Tru9I	TTAA	5 cut(s)	105, 398, 537, 828, 959
TscAI	CASTG	4 cut(s)	25, 253, 425, 1002
TseFI	GTSAC	2 cut(s)	145, 271
TseI	GCWGC	8 cut(s)	66, 578, 647, 738, 989, 1211, 1256, 1259
Tsp45I	GTSAC	2 cut(s)	145, 271
TspDTI	ATGAA	5 cut(s)	482, 486, 875, 1019, 1206
TspGWI	ACGGA	1 cut(s)	283
TspRI	CASTG	4 cut(s)	25, 253, 425, 1002
Van91I	CCANNNNNTGG	1 cut(s)	530
VpaK11BI	GGWCC	1 cut(s)	291
XceI	RCATGY	3 cut(s)	869, 912, 1235
XmnI	GAANNNNTTC	1 cut(s)	1067
XspI	CTAG	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.