Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0010535

Physical Location & Seq

Genomic Coordinates Reverse (-)

1233807 .. 1234424

Gene Structure 618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g02470.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGATGATGACGCATCAGCACTTTGGTAACAAACGCGGTGCAAACTCATATACACCTCCTCCTTTTCTTCCTATTCTACCCTATCAATCTCAGGTTCTTCCTCATTCTGGGTATAATTACCAGCCATCTCTTGGTGGATACATCAATCCAATGCAAACTTTTGGTCACCAGATTATGCCTCACCCACCATACTATGCTACCACACCTTATTATCCTATGGAACCAATTCGTTTTGGTTCTTTTGGAAGTTGGCCTTGTCTTGAACCTCAACTTTCTTGTCATGCTCCTAGTTTTATGCCAAGTATGGGATCTCATTCCTTGAATCCAAGAGATGCAGTAGCCTCGCTAAGGGGTGATATTGTGAAGCAGATTGAGTACTATTTTAGTGATGAGAATTTGGATAAGCCCGACAGGTACCTTATTTCTTTGATGGATGACAAAGGCTGGGTTTCAATATCTGCCATTGCGGAATTTCATAGGGTCAAGGCATTGTGTAAGTCTGTAACTTTCATTCTTGAGTCGTTGCTAGACTCGAGAATAGTGGAAGTGCAAGGTAACAGGATAAGAAGACGTGATGTATGGTCGAAGTGGATTTCATCAGCTAAGATAGTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000932 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005844 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010286 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0071704 GO:0090304 GO:1901360 GO:1901361 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

206

Amino Acids

23.42

Weight (kDa)

8.72

Isoelectric Point (pI)

47.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
La	PF05383	120 - 175	2.6e-19	La domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010535)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02470 FvH4_4g29920 FvH4_4g29960
malus_domestica	MD11G1176000.v1.1
prunus_persica	Prupe.3G218300_v2.0.a1
pyrus_communis	pycom17g09190
rosa_laevigata	RLG00000006380 RLG00000031169
rosa_multiflora	Rmu_sc0002682.1_g000003
rosa_roxburghii	Rroxscaffold_5G00379320
rosa_rugosa	Rorug04G0406200
rosa_samantha	Rh4BG370000 Rh4CG384100 Rh4DG364900 Rh5AG033300 Rh5BG031700 Rh5CG036000 Rh5DG032300
rosa_wichuraiana	Rw0G006370 Rw0G016310 Rw5G003070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	414
AccB1I	GGYRCC	1 cut(s)	414
AccB7I	CCANNNNNTGG	1 cut(s)	131
AccII	CGCG	1 cut(s)	36
AciI	CCGC	2 cut(s)	36, 467
AclWI	GGATC	1 cut(s)	316
AcsI	RAATTY	2 cut(s)	394, 470
AfaI	GTAC	2 cut(s)	377, 416
AfiI	CCNNNNNNNGG	4 cut(s)	107, 131, 305, 348
AgsI	TTSAA	3 cut(s)	263, 322, 453
AjiI	CACGTC	1 cut(s)	572
AluBI	AGCT	1 cut(s)	602
AluI	AGCT	1 cut(s)	602
AlwI	GGATC	1 cut(s)	316
Ama87I	CYCGRG	1 cut(s)	532
AoxI	GGCC	1 cut(s)	251
ApoI	RAATTY	2 cut(s)	394, 470
ArsI	GACNNNNNNTTYG	2 cut(s)	148, 180
Asp700I	GAANNNNTTC	1 cut(s)	225
Asp718I	GGTACC	1 cut(s)	414
AsuHPI	GGTGA	3 cut(s)	158, 173, 365
AvaI	CYCGRG	1 cut(s)	532
BanI	GGYRCC	1 cut(s)	414
BbsI	GAAGAC	1 cut(s)	574
BccI	CCATC	2 cut(s)	133, 424
BcgI	CGANNNNNNTGC	2 cut(s)	324, 358
BciVI	GTATCC	1 cut(s)	131
BfaI	CTAG	2 cut(s)	288, 527
BfuI	GTATCC	1 cut(s)	131
BmcAI	AGTACT	1 cut(s)	377
BmeT110I	CYCGRG	1 cut(s)	532
BmgBI	CACGTC	1 cut(s)	572
BmiI	GGNNCC	2 cut(s)	222, 416
BmsI	GCATC	2 cut(s)	22, 322
BpiI	GAAGAC	1 cut(s)	574
Bpu10I	CCTNAGC	1 cut(s)	347
BpuEI	CTTGAG	1 cut(s)	536
BsaXI	ACNNNNNCTCC	2 cut(s)	43, 73
Bsc4I	CCNNNNNNNGG	4 cut(s)	107, 131, 305, 348
Bse3DI	GCAATG	1 cut(s)	462
BseGI	GGATG	1 cut(s)	439
BseLI	CCNNNNNNNGG	4 cut(s)	107, 131, 305, 348
BseMI	GCAATG	1 cut(s)	462
BseMII	CTCAG	1 cut(s)	104
BseRI	GAGGAG	1 cut(s)	48
BseYI	CCCAGC	1 cut(s)	444
Bsh1236I	CGCG	1 cut(s)	36
BshFI	GGCC	1 cut(s)	253
BshNI	GGYRCC	1 cut(s)	414
BsiHKCI	CYCGRG	1 cut(s)	532
BslI	CCNNNNNNNGG	4 cut(s)	107, 131, 305, 348
BsnI	GGCC	1 cut(s)	253
BsoBI	CYCGRG	1 cut(s)	532
Bsp143I	GATC	1 cut(s)	308
BspACI	CCGC	2 cut(s)	36, 467
BspANI	GGCC	1 cut(s)	253
BspCNI	CTCAG	1 cut(s)	103
BspFNI	CGCG	1 cut(s)	36
BspHI	TCATGA	1 cut(s)	614
BspLI	GGNNCC	2 cut(s)	222, 416
BspPI	GGATC	1 cut(s)	316
BspT107I	GGYRCC	1 cut(s)	414
BsrDI	GCAATG	1 cut(s)	462
BssMI	GATC	1 cut(s)	308
BstDEI	CTNAG	3 cut(s)	90, 347, 603
BstEII	GGTNACC	1 cut(s)	164
BstENI	CCTNNNNNAGG	1 cut(s)	346
BstF5I	GGATG	1 cut(s)	439
BstFNI	CGCG	1 cut(s)	36
BstKTI	GATC	1 cut(s)	311
BstMBI	GATC	1 cut(s)	308
BstPI	GGTNACC	1 cut(s)	164
BstUI	CGCG	1 cut(s)	36
BstV2I	GAAGAC	1 cut(s)	574
BstX2I	RGATCY	1 cut(s)	308
BstYI	RGATCY	1 cut(s)	308
BsuI	GTATCC	1 cut(s)	131
BsuRI	GGCC	1 cut(s)	253
BtrI	CACGTC	1 cut(s)	572
BtsCI	GGATG	1 cut(s)	439
CciI	TCATGA	1 cut(s)	614
CseI	GACGC	1 cut(s)	19
Csp6I	GTAC	2 cut(s)	376, 415
CviAII	CATG	2 cut(s)	281, 615
CviJI	RGCY	6 cut(s)	124, 253, 341, 406, 444, 602
CviKI_1	RGCY	6 cut(s)	124, 253, 341, 406, 444, 602
CviQI	GTAC	2 cut(s)	376, 415
DdeI	CTNAG	3 cut(s)	90, 347, 603
DpnI	GATC	1 cut(s)	310
DpnII	GATC	1 cut(s)	308
Eco88I	CYCGRG	1 cut(s)	532
Eco91I	GGTNACC	1 cut(s)	164
EcoNI	CCTNNNNNAGG	1 cut(s)	346
EcoO65I	GGTNACC	1 cut(s)	164
FaeI	CATG	2 cut(s)	284, 618
FalI	AAGNNNNNCTT	2 cut(s)	238, 270
FatI	CATG	2 cut(s)	280, 614
FokI	GGATG	1 cut(s)	446
FspBI	CTAG	2 cut(s)	288, 527
GsaI	CCCAGC	1 cut(s)	448
HaeIII	GGCC	1 cut(s)	253
HgaI	GACGC	1 cut(s)	19
Hin1II	CATG	2 cut(s)	284, 618
HinfI	GANTC	3 cut(s)	322, 518, 530
HphI	GGTGA	3 cut(s)	158, 173, 365
Hpy188III	TCNNGA	4 cut(s)	260, 515, 534, 615
HpyCH4IV	ACGT	1 cut(s)	571
HpyCH4V	TGCA	4 cut(s)	41, 154, 335, 550
HpyF3I	CTNAG	3 cut(s)	90, 347, 603
HpySE526I	ACGT	1 cut(s)	571
Hsp92II	CATG	2 cut(s)	284, 618
KpnI	GGTACC	1 cut(s)	418
Kzo9I	GATC	1 cut(s)	308
LmnI	GCTCC	1 cut(s)	289
LpnPI	CCDG	7 cut(s)	77, 93, 134, 182, 397, 430, 544
LweI	GCATC	2 cut(s)	22, 322
MaeI	CTAG	2 cut(s)	288, 527
MaeII	ACGT	1 cut(s)	571
MaeIII	GTNAC	4 cut(s)	26, 164, 502, 554
MalI	GATC	1 cut(s)	310
MboI	GATC	1 cut(s)	308
MboII	GAAGA	3 cut(s)	59, 89, 579
MflI	RGATCY	1 cut(s)	308
MluCI	AATT	4 cut(s)	115, 225, 394, 470
MlyI	GAGTC	2 cut(s)	524, 527
MnlI	CCTC	6 cut(s)	66, 69, 111, 189, 276, 352
MroXI	GAANNNNTTC	1 cut(s)	225
MvnI	CGCG	1 cut(s)	36
NdeII	GATC	1 cut(s)	308
NlaIII	CATG	2 cut(s)	284, 618
NlaIV	GGNNCC	2 cut(s)	222, 416
NmuCI	GTSAC	1 cut(s)	164
PaeR7I	CTCGAG	1 cut(s)	532
PagI	TCATGA	1 cut(s)	614
PdmI	GAANNNNTTC	1 cut(s)	225
PfeI	GAWTC	1 cut(s)	322
PflMI	CCANNNNNTGG	1 cut(s)	131
PleI	GAGTC	2 cut(s)	524, 526
PpsI	GAGTC	2 cut(s)	524, 526
PspEI	GGTNACC	1 cut(s)	164
PspFI	CCCAGC	1 cut(s)	444
PspN4I	GGNNCC	2 cut(s)	222, 416
PsuI	RGATCY	1 cut(s)	308
RsaI	GTAC	2 cut(s)	377, 416
RsaNI	GTAC	2 cut(s)	376, 415
Sau3AI	GATC	1 cut(s)	308
ScaI	AGTACT	1 cut(s)	377
SchI	GAGTC	2 cut(s)	524, 527
SetI	ASST	9 cut(s)	58, 96, 208, 268, 416, 420, 556, 574, 604
SfaNI	GCATC	2 cut(s)	22, 322
Sfr274I	CTCGAG	1 cut(s)	532
SlaI	CTCGAG	1 cut(s)	532
SmlI	CTYRAG	2 cut(s)	515, 532
SmoI	CTYRAG	2 cut(s)	515, 532
Sse9I	AATT	4 cut(s)	115, 225, 394, 470
SsiI	CCGC	2 cut(s)	36, 467
SspMI	CTAG	2 cut(s)	288, 527
TaiI	ACGT	1 cut(s)	574
TaqI	TCGA	2 cut(s)	533, 584
TasI	AATT	4 cut(s)	115, 225, 394, 470
TatI	WGTACW	1 cut(s)	375
TfiI	GAWTC	1 cut(s)	322
TseFI	GTSAC	1 cut(s)	164
Tsp45I	GTSAC	1 cut(s)	164
TspDTI	ATGAA	4 cut(s)	464, 499, 585, 603
Van91I	CCANNNNNTGG	1 cut(s)	131
XagI	CCTNNNNNAGG	1 cut(s)	346
XapI	RAATTY	2 cut(s)	394, 470
XcmI	CCANNNNNNNNNTGG	1 cut(s)	128
XhoI	CTCGAG	1 cut(s)	532
XmnI	GAANNNNTTC	1 cut(s)	225
XspI	CTAG	2 cut(s)	288, 527
ZrmI	AGTACT	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.