Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00245

Orthogroup ID

OG0010535

Physical Location & Seq

Genomic Coordinates Reverse (-)

119396 .. 120073

Gene Structure 678 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G006370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGACAATGCATCAGCAGCATGTAGCTGGTAAGGACCATAGGTCAAGAAGTCTCAATCCTGTTGCCAAGCCCTTTTTGTCTCTACATGAAAACCAACACCCTATTCCTTCTTCACTACAGCCCTTCAAACCAGGCATACAAGATGTTGCAGCACCGCCTTTTCAACCTATGCTACACCAGCCTCACGTTCTTCCTGTTTATGGATATCATAACCAGGCATGCAGCATTAGTGGATACATTAATCCAGTTCAAGGTTTTGTGCACCCAAATCAGCCTCAACCTCGATATTACGCTGCCAATATCTTTAATCCTATTTTTGGATCTGTACCGCTCGTTACACCTCAGTTTTTTGGTTATGATCCATGTTACCAATTAGGTCAGCCAAGTATGGGATCTCATTCTTTGAATTCAGGGGTTCCATCAACATCGTTGAGGGATAAAATTGTGAAGCAAATAGAAAACTATTTCAGTGATGAGAATCTGCCACATGACCATTATCTAATTTCGTTGATGGATGACCAAGGGTGGGTTCCAATATCAACTGTTGCCAAGTTTAAAAGGGTTGAGAGAATGTGTGCTGATATACCATTTATTCTTGACTCATTGTTGTTTGGTTCAAGTGTTGTAGAAGTGCAGGGTAACAAGTTAAGAAGACGTCGTGATGAGTGGTCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000932 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005844 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010286 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0071704 GO:0090304 GO:1901360 GO:1901361 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

225

Amino Acids

25.45

Weight (kDa)

7.83

Isoelectric Point (pI)

58.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
La	PF05383	148 - 202	6e-21	La domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010535)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02470 FvH4_4g29920 FvH4_4g29960
malus_domestica	MD11G1176000.v1.1
prunus_persica	Prupe.3G218300_v2.0.a1
pyrus_communis	pycom17g09190
rosa_laevigata	RLG00000006380 RLG00000031169
rosa_multiflora	Rmu_sc0002682.1_g000003
rosa_roxburghii	Rroxscaffold_5G00379320
rosa_rugosa	Rorug04G0406200
rosa_samantha	Rh4BG370000 Rh4CG384100 Rh4DG364900 Rh5AG033300 Rh5BG031700 Rh5CG036000 Rh5DG032300
rosa_wichuraiana	Rw0G006370 Rw0G016310 Rw5G003070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	658
AccBSI	CCGCTC	1 cut(s)	331
AciI	CCGC	2 cut(s)	155, 329
AclWI	GGATC	3 cut(s)	328, 353, 400
AcsI	RAATTY	1 cut(s)	406
AcyI	GRCGYC	1 cut(s)	655
AfaI	GTAC	1 cut(s)	327
AfiI	CCNNNNNNNGG	5 cut(s)	200, 251, 317, 389, 526
AgsI	TTSAA	5 cut(s)	127, 164, 251, 406, 618
AhdI	GACNNNNNGTC	1 cut(s)	40
AjnI	CCWGG	2 cut(s)	130, 213
AjuI	GAANNNNNNNTTGG	4 cut(s)	87, 119, 513, 545
AluBI	AGCT	1 cut(s)	26
AluI	AGCT	1 cut(s)	26
Alw21I	GWGCWC	1 cut(s)	264
Alw26I	GTCTC	2 cut(s)	56, 84
Alw44I	GTGCAC	1 cut(s)	260
AlwI	GGATC	3 cut(s)	328, 353, 400
ApaLI	GTGCAC	1 cut(s)	260
ApeKI	GCWGC	4 cut(s)	16, 149, 222, 293
ApoI	RAATTY	1 cut(s)	406
AseI	ATTAAT	1 cut(s)	240
AspS9I	GGNCC	1 cut(s)	34
AvaII	GGWCC	1 cut(s)	34
BaeGI	GKGCMC	1 cut(s)	264
BbsI	GAAGAC	1 cut(s)	658
Bbv12I	GWGCWC	1 cut(s)	264
BbvI	GCAGC	4 cut(s)	28, 161, 234, 280
BccI	CCATC	2 cut(s)	427, 505
BciT130I	CCWGG	2 cut(s)	132, 215
BciVI	GTATCC	1 cut(s)	227
BcoDI	GTCTC	2 cut(s)	56, 84
BfmI	CTRYAG	1 cut(s)	116
BfuI	GTATCC	1 cut(s)	227
BisI	GCNGC	4 cut(s)	17, 150, 223, 294
BlsI	GCNGC	4 cut(s)	18, 151, 224, 295
Bme1390I	CCNGG	2 cut(s)	132, 215
Bme18I	GGWCC	1 cut(s)	34
BmeRI	GACNNNNNGTC	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	2 cut(s)	417, 531
BmrFI	CCNGG	2 cut(s)	132, 215
BmsI	GCATC	1 cut(s)	19
BpiI	GAAGAC	1 cut(s)	658
BsaBI	GATNNNNATC	1 cut(s)	477
BsaHI	GRCGYC	1 cut(s)	655
BsaJI	CCNNGG	1 cut(s)	520
Bsc4I	CCNNNNNNNGG	5 cut(s)	200, 251, 317, 389, 526
Bse1I	ACTGG	1 cut(s)	245
Bse8I	GATNNNNATC	1 cut(s)	477
BseBI	CCWGG	2 cut(s)	132, 215
BseDI	CCNNGG	1 cut(s)	520
BseGI	GGATG	1 cut(s)	520
BseJI	GATNNNNATC	1 cut(s)	477
BseLI	CCNNNNNNNGG	5 cut(s)	200, 251, 317, 389, 526
BseMII	CTCAG	1 cut(s)	356
BseNI	ACTGG	1 cut(s)	245
BseSI	GKGCMC	1 cut(s)	264
BseXI	GCAGC	4 cut(s)	28, 161, 234, 280
BsgI	GTGCAG	1 cut(s)	653
BsiHKAI	GWGCWC	1 cut(s)	264
BslI	CCNNNNNNNGG	5 cut(s)	200, 251, 317, 389, 526
BsmAI	GTCTC	2 cut(s)	56, 84
Bsp1286I	GDGCHC	1 cut(s)	264
Bsp143I	GATC	3 cut(s)	320, 358, 392
BspACI	CCGC	2 cut(s)	155, 329
BspCNI	CTCAG	1 cut(s)	355
BspLI	GGNNCC	2 cut(s)	417, 531
BspPI	GGATC	3 cut(s)	328, 353, 400
BsrBI	CCGCTC	1 cut(s)	331
BsrI	ACTGG	1 cut(s)	245
BssECI	CCNNGG	1 cut(s)	520
BssMI	GATC	3 cut(s)	320, 358, 392
BssNI	GRCGYC	1 cut(s)	655
BssT1I	CCWWGG	1 cut(s)	520
Bst2UI	CCWGG	2 cut(s)	132, 215
Bst4CI	ACNGT	1 cut(s)	544
BstACI	GRCGYC	1 cut(s)	655
BstC8I	GCNNGC	1 cut(s)	220
BstDEI	CTNAG	1 cut(s)	342
BstF5I	GGATG	1 cut(s)	520
BstKTI	GATC	3 cut(s)	323, 361, 395
BstMAI	GTCTC	2 cut(s)	56, 84
BstMBI	GATC	3 cut(s)	320, 358, 392
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 178
BstNI	CCWGG	2 cut(s)	132, 215
BstNSI	RCATGY	2 cut(s)	23, 222
BstSCI	CCNGG	2 cut(s)	130, 213
BstSFI	CTRYAG	1 cut(s)	116
BstSLI	GKGCMC	1 cut(s)	264
BstV1I	GCAGC	4 cut(s)	28, 161, 234, 280
BstV2I	GAAGAC	1 cut(s)	658
BstX2I	RGATCY	2 cut(s)	320, 392
BstYI	RGATCY	2 cut(s)	320, 392
BsuI	GTATCC	1 cut(s)	227
BtsCI	GGATG	1 cut(s)	520
BtsIMutI	CAGTG	1 cut(s)	475
Cac8I	GCNNGC	1 cut(s)	220
Cfr13I	GGNCC	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	326
CviAII	CATG	5 cut(s)	20, 86, 219, 363, 488
CviJI	RGCY	6 cut(s)	26, 70, 121, 181, 274, 382
CviKI_1	RGCY	6 cut(s)	26, 70, 121, 181, 274, 382
CviQI	GTAC	1 cut(s)	326
DdeI	CTNAG	1 cut(s)	342
DpnI	GATC	3 cut(s)	322, 360, 394
DpnII	GATC	3 cut(s)	320, 358, 392
DraI	TTTAAA	1 cut(s)	556
DriI	GACNNNNNGTC	1 cut(s)	40
Eam1105I	GACNNNNNGTC	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	520
Eco32I	GATATC	1 cut(s)	206
Eco47I	GGWCC	1 cut(s)	34
EcoRI	GAATTC	1 cut(s)	406
EcoRII	CCWGG	2 cut(s)	130, 213
EcoRV	GATATC	1 cut(s)	206
EcoT14I	CCWWGG	1 cut(s)	520
EcoT22I	ATGCAT	1 cut(s)	12
ErhI	CCWWGG	1 cut(s)	520
FaeI	CATG	5 cut(s)	23, 89, 222, 366, 491
FatI	CATG	5 cut(s)	19, 85, 218, 362, 487
Fnu4HI	GCNGC	4 cut(s)	17, 150, 223, 294
FokI	GGATG	1 cut(s)	527
Fsp4HI	GCNGC	4 cut(s)	17, 150, 223, 294
GluI	GCNGC	4 cut(s)	17, 150, 223, 294
Hin1I	GRCGYC	1 cut(s)	655
Hin1II	CATG	5 cut(s)	23, 89, 222, 366, 491
HinfI	GANTC	2 cut(s)	478, 599
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188III	TCNNGA	3 cut(s)	45, 596, 659
Hpy8I	GTNNAC	1 cut(s)	262
Hpy99I	CGWCG	1 cut(s)	660
HpyAV	CCTTC	2 cut(s)	117, 133
HpyCH4III	ACNGT	1 cut(s)	544
HpyCH4IV	ACGT	2 cut(s)	186, 655
HpyCH4V	TGCA	5 cut(s)	10, 149, 222, 262, 634
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 178
HpyF3I	CTNAG	1 cut(s)	342
HpySE526I	ACGT	2 cut(s)	186, 655
Hsp92I	GRCGYC	1 cut(s)	655
Hsp92II	CATG	5 cut(s)	23, 89, 222, 366, 491
Kzo9I	GATC	3 cut(s)	320, 358, 392
Lsp1109I	GCAGC	4 cut(s)	28, 161, 234, 280
LweI	GCATC	1 cut(s)	19
MaeII	ACGT	2 cut(s)	186, 655
MaeIII	GTNAC	3 cut(s)	334, 365, 638
MalI	GATC	3 cut(s)	322, 360, 394
MbiI	CCGCTC	1 cut(s)	331
MboI	GATC	3 cut(s)	320, 358, 392
MboII	GAAGA	3 cut(s)	102, 182, 663
MflI	RGATCY	2 cut(s)	320, 392
MhlI	GDGCHC	1 cut(s)	264
MluCI	AATT	5 cut(s)	371, 406, 441, 501, 673
MlyI	GAGTC	1 cut(s)	593
MnlI	CCTC	5 cut(s)	192, 285, 291, 351, 426
Mph1103I	ATGCAT	1 cut(s)	12
MseI	TTAA	4 cut(s)	240, 306, 555, 647
MspR9I	CCNGG	2 cut(s)	132, 215
MvaI	CCWGG	2 cut(s)	132, 215
MwoI	GCNNNNNNNGC	2 cut(s)	16, 178
NdeII	GATC	3 cut(s)	320, 358, 392
NlaIII	CATG	5 cut(s)	23, 89, 222, 366, 491
NlaIV	GGNNCC	2 cut(s)	417, 531
NsiI	ATGCAT	1 cut(s)	12
NspI	RCATGY	2 cut(s)	23, 222
PaeI	GCATGC	1 cut(s)	222
PfeI	GAWTC	1 cut(s)	478
PkrI	GCNGC	4 cut(s)	18, 151, 224, 295
PleI	GAGTC	1 cut(s)	593
PpsI	GAGTC	1 cut(s)	593
PshBI	ATTAAT	1 cut(s)	240
Psp6I	CCWGG	2 cut(s)	130, 213
PspGI	CCWGG	2 cut(s)	130, 213
PspN4I	GGNNCC	2 cut(s)	417, 531
PspPI	GGNCC	1 cut(s)	34
PsuI	RGATCY	2 cut(s)	320, 392
RsaI	GTAC	1 cut(s)	327
RsaNI	GTAC	1 cut(s)	326
SaqAI	TTAA	4 cut(s)	240, 306, 555, 647
SatI	GCNGC	4 cut(s)	17, 150, 223, 294
Sau3AI	GATC	3 cut(s)	320, 358, 392
Sau96I	GGNCC	1 cut(s)	34
SchI	GAGTC	1 cut(s)	593
ScrFI	CCNGG	2 cut(s)	132, 215
SduI	GDGCHC	1 cut(s)	264
SetI	ASST	9 cut(s)	28, 44, 169, 189, 256, 283, 343, 379, 658
SfaNI	GCATC	1 cut(s)	19
SfcI	CTRYAG	1 cut(s)	116
SinI	GGWCC	1 cut(s)	34
SphI	GCATGC	1 cut(s)	222
Sse9I	AATT	5 cut(s)	371, 406, 441, 501, 673
SsiI	CCGC	2 cut(s)	155, 329
StyD4I	CCNGG	2 cut(s)	130, 213
StyI	CCWWGG	1 cut(s)	520
TaaI	ACNGT	1 cut(s)	544
TaiI	ACGT	2 cut(s)	189, 658
TaqI	TCGA	1 cut(s)	283
TasI	AATT	5 cut(s)	371, 406, 441, 501, 673
TfiI	GAWTC	1 cut(s)	478
Tru1I	TTAA	4 cut(s)	240, 306, 555, 647
Tru9I	TTAA	4 cut(s)	240, 306, 555, 647
TscAI	CASTG	1 cut(s)	475
TseI	GCWGC	4 cut(s)	16, 149, 222, 293
TspDTI	ATGAA	1 cut(s)	102
TspRI	CASTG	1 cut(s)	475
VneI	GTGCAC	1 cut(s)	260
VpaK11BI	GGWCC	1 cut(s)	34
VspI	ATTAAT	1 cut(s)	240
XapI	RAATTY	1 cut(s)	406
XceI	RCATGY	2 cut(s)	23, 222
ZraI	GACGTC	1 cut(s)	656
Zsp2I	ATGCAT	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.