Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0010535

Physical Location & Seq

Genomic Coordinates Reverse (-)

58610174 .. 58611350

Gene Structure 1177 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG364900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGATGACAATGCATCAGCAGCATGTAGCTGGTAAGGACCATAGGTCAAGAAGTCTCAATCCTGCTGCCAAGCCCTTTTTGTCTCTACATGAAAACCAACATCCTATTCCTTCTTCACTACAACCCTTCAAACCAGGCATACAAGATGTTGCAGCACCACCTTTTCAACCTATGCTACACCAGCCTCACGTTCTTCCTGTTTATGGATATCATAACCAGGCATGCAGCATTAGTGGATACATTAATCCAGTTCAAGGTTTTGTGCACCCAAATCAGCCTCAACCTCGATATTACGCTGCCAATTTCTTTAATCCTATTTTTGGATCCGTGCCGCTCGTTACACCTCAGTTTTTTGGTCATGATCCATGTTACCAATTAGGTCAGCCAAGTATGGGATCTCATTCTTTGAATTCAGGGGTTCCATCAGCATCGTTGAGGGATAAAATTGTGAAGCAAATAGAATACTATTTCAGTGATGAGAATCTGCCACATGACCATTATCTAATTTCGTTGATGGATGACCAAGGGTGGGTTCCAATATCAACTGTTGCCAAGTTTAAAAGGGTTGAGAGAATGTGTGCGGATATACCATTTATTCTTGACTCATTGTTGTTTGGTTCAAGTGTTGTAGAAGTGCAGGGTAACAAGTTAAGAAGACGTCGTGATGAGTGGTCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000932 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005844 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010286 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0071704 GO:0090304 GO:1901360 GO:1901361 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

226

Amino Acids

25.58

Weight (kDa)

7.84

Isoelectric Point (pI)

55.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
La	PF05383	149 - 203	4.2e-23	La domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010535)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02470 FvH4_4g29920 FvH4_4g29960
malus_domestica	MD11G1176000.v1.1
prunus_persica	Prupe.3G218300_v2.0.a1
pyrus_communis	pycom17g09190
rosa_laevigata	RLG00000006380 RLG00000031169
rosa_multiflora	Rmu_sc0002682.1_g000003
rosa_roxburghii	Rroxscaffold_5G00379320
rosa_rugosa	Rorug04G0406200
rosa_samantha	Rh4BG370000 Rh4CG384100 Rh4DG364900 Rh5AG033300 Rh5BG031700 Rh5CG036000 Rh5DG032300
rosa_wichuraiana	Rw0G006370 Rw0G016310 Rw5G003070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	661
AccBSI	CCGCTC	1 cut(s)	334
AciI	CCGC	2 cut(s)	332, 581
AclWI	GGATC	4 cut(s)	318, 331, 356, 403
AcsI	RAATTY	1 cut(s)	409
AcyI	GRCGYC	1 cut(s)	658
AfiI	CCNNNNNNNGG	5 cut(s)	203, 254, 320, 392, 529
AgsI	TTSAA	5 cut(s)	130, 167, 254, 409, 621
AhdI	GACNNNNNGTC	1 cut(s)	43
AjnI	CCWGG	2 cut(s)	133, 216
AjuI	GAANNNNNNNTTGG	4 cut(s)	90, 122, 516, 548
AluBI	AGCT	1 cut(s)	29
AluI	AGCT	1 cut(s)	29
Alw21I	GWGCWC	1 cut(s)	267
Alw26I	GTCTC	2 cut(s)	59, 87
Alw44I	GTGCAC	1 cut(s)	263
AlwI	GGATC	4 cut(s)	318, 331, 356, 403
ApaLI	GTGCAC	1 cut(s)	263
ApeKI	GCWGC	5 cut(s)	19, 65, 152, 225, 296
ApoI	RAATTY	1 cut(s)	409
AseI	ATTAAT	1 cut(s)	243
AspS9I	GGNCC	1 cut(s)	37
AvaII	GGWCC	1 cut(s)	37
BaeGI	GKGCMC	1 cut(s)	267
BamHI	GGATCC	1 cut(s)	323
BbsI	GAAGAC	1 cut(s)	661
Bbv12I	GWGCWC	1 cut(s)	267
BbvI	GCAGC	5 cut(s)	31, 52, 164, 237, 283
BccI	CCATC	2 cut(s)	430, 508
BciT130I	CCWGG	2 cut(s)	135, 218
BciVI	GTATCC	1 cut(s)	230
BcoDI	GTCTC	2 cut(s)	59, 87
BfuI	GTATCC	1 cut(s)	230
BisI	GCNGC	6 cut(s)	20, 66, 153, 226, 297, 332
BlsI	GCNGC	6 cut(s)	21, 67, 154, 227, 298, 333
Bme1390I	CCNGG	2 cut(s)	135, 218
Bme18I	GGWCC	1 cut(s)	37
BmeRI	GACNNNNNGTC	1 cut(s)	43
BmgT120I	GGNCC	1 cut(s)	37
BmiI	GGNNCC	3 cut(s)	325, 420, 534
BmrFI	CCNGG	2 cut(s)	135, 218
BmsI	GCATC	2 cut(s)	22, 437
BpiI	GAAGAC	1 cut(s)	661
BsaBI	GATNNNNATC	1 cut(s)	480
BsaHI	GRCGYC	1 cut(s)	658
BsaJI	CCNNGG	1 cut(s)	523
Bsc4I	CCNNNNNNNGG	5 cut(s)	203, 254, 320, 392, 529
Bse1I	ACTGG	1 cut(s)	248
Bse8I	GATNNNNATC	1 cut(s)	480
BseBI	CCWGG	2 cut(s)	135, 218
BseDI	CCNNGG	1 cut(s)	523
BseGI	GGATG	2 cut(s)	100, 523
BseJI	GATNNNNATC	1 cut(s)	480
BseLI	CCNNNNNNNGG	5 cut(s)	203, 254, 320, 392, 529
BseMII	CTCAG	1 cut(s)	359
BseNI	ACTGG	1 cut(s)	248
BseSI	GKGCMC	1 cut(s)	267
BseXI	GCAGC	5 cut(s)	31, 52, 164, 237, 283
BsgI	GTGCAG	1 cut(s)	656
BsiHKAI	GWGCWC	1 cut(s)	267
BslI	CCNNNNNNNGG	5 cut(s)	203, 254, 320, 392, 529
BsmAI	GTCTC	2 cut(s)	59, 87
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp143I	GATC	3 cut(s)	323, 361, 395
BspACI	CCGC	2 cut(s)	332, 581
BspCNI	CTCAG	1 cut(s)	358
BspHI	TCATGA	1 cut(s)	358
BspLI	GGNNCC	3 cut(s)	325, 420, 534
BspPI	GGATC	4 cut(s)	318, 331, 356, 403
BsrBI	CCGCTC	1 cut(s)	334
BsrI	ACTGG	1 cut(s)	248
BssECI	CCNNGG	1 cut(s)	523
BssMI	GATC	3 cut(s)	323, 361, 395
BssNI	GRCGYC	1 cut(s)	658
BssT1I	CCWWGG	1 cut(s)	523
Bst2UI	CCWGG	2 cut(s)	135, 218
Bst4CI	ACNGT	1 cut(s)	547
BstACI	GRCGYC	1 cut(s)	658
BstC8I	GCNNGC	1 cut(s)	223
BstDEI	CTNAG	1 cut(s)	345
BstF5I	GGATG	2 cut(s)	100, 523
BstKTI	GATC	3 cut(s)	326, 364, 398
BstMAI	GTCTC	2 cut(s)	59, 87
BstMBI	GATC	3 cut(s)	323, 361, 395
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 181
BstNI	CCWGG	2 cut(s)	135, 218
BstNSI	RCATGY	2 cut(s)	26, 225
BstSCI	CCNGG	2 cut(s)	133, 216
BstSLI	GKGCMC	1 cut(s)	267
BstV1I	GCAGC	5 cut(s)	31, 52, 164, 237, 283
BstV2I	GAAGAC	1 cut(s)	661
BstX2I	RGATCY	2 cut(s)	323, 395
BstYI	RGATCY	2 cut(s)	323, 395
BsuI	GTATCC	1 cut(s)	230
BtsCI	GGATG	2 cut(s)	100, 523
BtsIMutI	CAGTG	1 cut(s)	478
Cac8I	GCNNGC	1 cut(s)	223
CciI	TCATGA	1 cut(s)	358
Cfr13I	GGNCC	1 cut(s)	37
CviAII	CATG	6 cut(s)	23, 89, 222, 359, 366, 491
CviJI	RGCY	5 cut(s)	29, 73, 184, 277, 385
CviKI_1	RGCY	5 cut(s)	29, 73, 184, 277, 385
DdeI	CTNAG	1 cut(s)	345
DpnI	GATC	3 cut(s)	325, 363, 397
DpnII	GATC	3 cut(s)	323, 361, 395
DraI	TTTAAA	1 cut(s)	559
DriI	GACNNNNNGTC	1 cut(s)	43
Eam1105I	GACNNNNNGTC	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	523
Eco32I	GATATC	1 cut(s)	209
Eco47I	GGWCC	1 cut(s)	37
EcoRI	GAATTC	1 cut(s)	409
EcoRII	CCWGG	2 cut(s)	133, 216
EcoRV	GATATC	1 cut(s)	209
EcoT14I	CCWWGG	1 cut(s)	523
EcoT22I	ATGCAT	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	523
FaeI	CATG	6 cut(s)	26, 92, 225, 362, 369, 494
FatI	CATG	6 cut(s)	22, 88, 221, 358, 365, 490
Fnu4HI	GCNGC	6 cut(s)	20, 66, 153, 226, 297, 332
FokI	GGATG	2 cut(s)	87, 530
Fsp4HI	GCNGC	6 cut(s)	20, 66, 153, 226, 297, 332
GluI	GCNGC	6 cut(s)	20, 66, 153, 226, 297, 332
Hin1I	GRCGYC	1 cut(s)	658
Hin1II	CATG	6 cut(s)	26, 92, 225, 362, 369, 494
HinfI	GANTC	2 cut(s)	481, 602
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188III	TCNNGA	4 cut(s)	48, 359, 599, 662
Hpy8I	GTNNAC	1 cut(s)	265
Hpy99I	CGWCG	1 cut(s)	663
HpyAV	CCTTC	2 cut(s)	120, 136
HpyCH4III	ACNGT	1 cut(s)	547
HpyCH4IV	ACGT	2 cut(s)	189, 658
HpyCH4V	TGCA	5 cut(s)	13, 152, 225, 265, 637
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 181
HpyF3I	CTNAG	1 cut(s)	345
HpySE526I	ACGT	2 cut(s)	189, 658
Hsp92I	GRCGYC	1 cut(s)	658
Hsp92II	CATG	6 cut(s)	26, 92, 225, 362, 369, 494
Kzo9I	GATC	3 cut(s)	323, 361, 395
Lsp1109I	GCAGC	5 cut(s)	31, 52, 164, 237, 283
LweI	GCATC	2 cut(s)	22, 437
MaeII	ACGT	2 cut(s)	189, 658
MaeIII	GTNAC	3 cut(s)	337, 368, 641
MalI	GATC	3 cut(s)	325, 363, 397
MbiI	CCGCTC	1 cut(s)	334
MboI	GATC	3 cut(s)	323, 361, 395
MboII	GAAGA	3 cut(s)	105, 185, 666
MflI	RGATCY	2 cut(s)	323, 395
MhlI	GDGCHC	1 cut(s)	267
MluCI	AATT	6 cut(s)	301, 374, 409, 444, 504, 676
MlyI	GAGTC	1 cut(s)	596
MnlI	CCTC	5 cut(s)	195, 288, 294, 354, 429
Mph1103I	ATGCAT	1 cut(s)	15
MseI	TTAA	4 cut(s)	243, 309, 558, 650
MspR9I	CCNGG	2 cut(s)	135, 218
MvaI	CCWGG	2 cut(s)	135, 218
MwoI	GCNNNNNNNGC	2 cut(s)	19, 181
NdeII	GATC	3 cut(s)	323, 361, 395
NlaIII	CATG	6 cut(s)	26, 92, 225, 362, 369, 494
NlaIV	GGNNCC	3 cut(s)	325, 420, 534
NsiI	ATGCAT	1 cut(s)	15
NspI	RCATGY	2 cut(s)	26, 225
PaeI	GCATGC	1 cut(s)	225
PagI	TCATGA	1 cut(s)	358
PfeI	GAWTC	1 cut(s)	481
PkrI	GCNGC	6 cut(s)	21, 67, 154, 227, 298, 333
PleI	GAGTC	1 cut(s)	596
PpsI	GAGTC	1 cut(s)	596
PshBI	ATTAAT	1 cut(s)	243
Psp6I	CCWGG	2 cut(s)	133, 216
PspGI	CCWGG	2 cut(s)	133, 216
PspN4I	GGNNCC	3 cut(s)	325, 420, 534
PspPI	GGNCC	1 cut(s)	37
PsuI	RGATCY	2 cut(s)	323, 395
SaqAI	TTAA	4 cut(s)	243, 309, 558, 650
SatI	GCNGC	6 cut(s)	20, 66, 153, 226, 297, 332
Sau3AI	GATC	3 cut(s)	323, 361, 395
Sau96I	GGNCC	1 cut(s)	37
SchI	GAGTC	1 cut(s)	596
ScrFI	CCNGG	2 cut(s)	135, 218
SduI	GDGCHC	1 cut(s)	267
SfaNI	GCATC	2 cut(s)	22, 437
SinI	GGWCC	1 cut(s)	37
SphI	GCATGC	1 cut(s)	225
Sse9I	AATT	6 cut(s)	301, 374, 409, 444, 504, 676
SsiI	CCGC	2 cut(s)	332, 581
StyD4I	CCNGG	2 cut(s)	133, 216
StyI	CCWWGG	1 cut(s)	523
TaaI	ACNGT	1 cut(s)	547
TaiI	ACGT	2 cut(s)	192, 661
TaqI	TCGA	1 cut(s)	286
TasI	AATT	6 cut(s)	301, 374, 409, 444, 504, 676
TauI	GCSGC	1 cut(s)	334
TfiI	GAWTC	1 cut(s)	481
Tru1I	TTAA	4 cut(s)	243, 309, 558, 650
Tru9I	TTAA	4 cut(s)	243, 309, 558, 650
TscAI	CASTG	1 cut(s)	478
TseI	GCWGC	5 cut(s)	19, 65, 152, 225, 296
TspDTI	ATGAA	1 cut(s)	105
TspGWI	ACGGA	1 cut(s)	316
TspRI	CASTG	1 cut(s)	478
VneI	GTGCAC	1 cut(s)	263
VpaK11BI	GGWCC	1 cut(s)	37
VspI	ATTAAT	1 cut(s)	243
XapI	RAATTY	1 cut(s)	409
XceI	RCATGY	2 cut(s)	26, 225
ZraI	GACGTC	1 cut(s)	659
Zsp2I	ATGCAT	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.