Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0010535

Physical Location & Seq

Genomic Coordinates Forward (+)

6646993 .. 6647835

Gene Structure 843 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006380

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGAAGGACAAGGAATCAATATCCAAAAAAGATCTTGGAAAAGGAATGGCATGTTATAAAAGCCTGGGATTTGCAATCAGAACTCCAAATCTCTGCACTGCTTATTTCATTAGCCCCCCAATAACTTCAAGTTCCTTGCTTCTTGATCAATCTGCAAGCCTTTCCATGATCACAATGCATCAGCAGCATGTAGCTGGTAAGGACCATAGGTTAGGAAGTCTCAATCCTGCTGCCAAGCCCTTTTTGCCTCTACATGAAAACCAACACCCTGTTCCTTCTTCACTACAATACTTCAAACCAGGCATACAAGATGTTGCAGCACCGCCTTTTCAACCTATGCTATACCAGCCTCACGTTCTTCCTGTATATGGATATTATAACCAGCCATGCATTAGTGGATACATTAATCCAGTTCAAGGTTTTGTGCACCCAAATCAGCCTCAACCTCGATATTACGCTGCCAATTTCTTTAACCCTATTTTTGGATCTGTGCCGCTTGTTAAACCTCAGTTTTTTGGTCATGATCCATGTTACCAATTAGGTCGGCCTAGTATGGGATCTCATTCTTTGAATTCAGGGGTTCCGTCAGCCTCGTTGAGGGATAAAATTGTGAAGCAAATAGAATACTATTTCAGTGATGAGAATCTCCCACATGACCATCATCTAATTTCGTTGATGGATGACCAAGGGTGGGTTCCAATATCAACTGTTGCCAAGTTTAAAAGGGTTGAGAGAATGTGTACGGATATACCATTTATTCTTGACTCACTGTTGTTTGGTTCAAGTGTTGTAGAAGTGCAGGGTAACAAGTTAAGAAGACGTCGAGATGAGTGGTCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000932 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005844 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010286 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0071704 GO:0090304 GO:1901360 GO:1901361 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

281

Amino Acids

31.5

Weight (kDa)

8.86

Isoelectric Point (pI)

49.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
La	PF05383	203 - 257	8.9e-23	La domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010535)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02470 FvH4_4g29920 FvH4_4g29960
malus_domestica	MD11G1176000.v1.1
prunus_persica	Prupe.3G218300_v2.0.a1
pyrus_communis	pycom17g09190
rosa_laevigata	RLG00000006380 RLG00000031169
rosa_multiflora	Rmu_sc0002682.1_g000003
rosa_roxburghii	Rroxscaffold_5G00379320
rosa_rugosa	Rorug04G0406200
rosa_samantha	Rh4BG370000 Rh4CG384100 Rh4DG364900 Rh5AG033300 Rh5BG031700 Rh5CG036000 Rh5DG032300
rosa_wichuraiana	Rw0G006370 Rw0G016310 Rw5G003070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	57, 378
AatII	GACGTC	1 cut(s)	823
AciI	CCGC	2 cut(s)	323, 494
AclWI	GGATC	3 cut(s)	493, 518, 565
AcsI	RAATTY	1 cut(s)	571
AcyI	GRCGYC	1 cut(s)	820
AfaI	GTAC	1 cut(s)	742
AfiI	CCNNNNNNNGG	6 cut(s)	368, 416, 482, 554, 597, 691
AgsI	TTSAA	6 cut(s)	129, 295, 332, 416, 571, 783
AjnI	CCWGG	2 cut(s)	63, 298
AjuI	GAANNNNNNNTTGG	4 cut(s)	255, 287, 678, 710
AluBI	AGCT	1 cut(s)	194
AluI	AGCT	1 cut(s)	194
Alw21I	GWGCWC	1 cut(s)	429
Alw26I	GTCTC	1 cut(s)	224
Alw44I	GTGCAC	1 cut(s)	425
AlwI	GGATC	3 cut(s)	493, 518, 565
AoxI	GGCC	1 cut(s)	545
ApaLI	GTGCAC	1 cut(s)	425
ApeKI	GCWGC	4 cut(s)	184, 230, 317, 458
ApoI	RAATTY	1 cut(s)	571
AseI	ATTAAT	1 cut(s)	405
AspS9I	GGNCC	1 cut(s)	202
AvaII	GGWCC	1 cut(s)	202
BaeGI	GKGCMC	1 cut(s)	429
BbsI	GAAGAC	1 cut(s)	823
Bbv12I	GWGCWC	1 cut(s)	429
BbvI	GCAGC	4 cut(s)	196, 217, 329, 445
BccI	CCATC	2 cut(s)	666, 670
BciT130I	CCWGG	2 cut(s)	65, 300
BciVI	GTATCC	1 cut(s)	392
BclI	TGATCA	2 cut(s)	145, 168
BcoDI	GTCTC	1 cut(s)	224
BfaI	CTAG	1 cut(s)	549
BfuI	GTATCC	1 cut(s)	392
BglII	AGATCT	1 cut(s)	31
BisI	GCNGC	5 cut(s)	185, 231, 318, 459, 494
BlsI	GCNGC	5 cut(s)	186, 232, 319, 460, 495
Bme1390I	CCNGG	2 cut(s)	65, 300
Bme18I	GGWCC	1 cut(s)	202
BmgT120I	GGNCC	1 cut(s)	202
BmiI	GGNNCC	2 cut(s)	582, 696
BmrFI	CCNGG	2 cut(s)	65, 300
BmsI	GCATC	1 cut(s)	187
BpiI	GAAGAC	1 cut(s)	823
BsaBI	GATNNNNATC	1 cut(s)	642
BsaHI	GRCGYC	1 cut(s)	820
BsaJI	CCNNGG	2 cut(s)	64, 685
Bsc4I	CCNNNNNNNGG	6 cut(s)	368, 416, 482, 554, 597, 691
Bse1I	ACTGG	1 cut(s)	410
Bse8I	GATNNNNATC	1 cut(s)	642
BseBI	CCWGG	2 cut(s)	65, 300
BseDI	CCNNGG	2 cut(s)	64, 685
BseGI	GGATG	1 cut(s)	685
BseJI	GATNNNNATC	1 cut(s)	642
BseLI	CCNNNNNNNGG	6 cut(s)	368, 416, 482, 554, 597, 691
BseMII	CTCAG	1 cut(s)	521
BseNI	ACTGG	1 cut(s)	410
BseSI	GKGCMC	1 cut(s)	429
BseXI	GCAGC	4 cut(s)	196, 217, 329, 445
BsgI	GTGCAG	2 cut(s)	79, 818
BshFI	GGCC	1 cut(s)	547
BsiHKAI	GWGCWC	1 cut(s)	429
BslI	CCNNNNNNNGG	6 cut(s)	368, 416, 482, 554, 597, 691
BsmAI	GTCTC	1 cut(s)	224
BsnI	GGCC	1 cut(s)	547
Bsp1286I	GDGCHC	1 cut(s)	429
Bsp143I	GATC	6 cut(s)	31, 145, 168, 485, 523, 557
BspACI	CCGC	2 cut(s)	323, 494
BspANI	GGCC	1 cut(s)	547
BspCNI	CTCAG	1 cut(s)	520
BspHI	TCATGA	1 cut(s)	520
BspLI	GGNNCC	2 cut(s)	582, 696
BspPI	GGATC	3 cut(s)	493, 518, 565
BsrI	ACTGG	1 cut(s)	410
BssECI	CCNNGG	2 cut(s)	64, 685
BssMI	GATC	6 cut(s)	31, 145, 168, 485, 523, 557
BssNI	GRCGYC	1 cut(s)	820
BssT1I	CCWWGG	1 cut(s)	685
Bst2UI	CCWGG	2 cut(s)	65, 300
Bst4CI	ACNGT	2 cut(s)	709, 771
BstACI	GRCGYC	1 cut(s)	820
BstC8I	GCNNGC	1 cut(s)	157
BstDEI	CTNAG	1 cut(s)	507
BstENI	CCTNNNNNAGG	1 cut(s)	595
BstF5I	GGATG	1 cut(s)	685
BstKTI	GATC	6 cut(s)	34, 148, 171, 488, 526, 560
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	6 cut(s)	31, 145, 168, 485, 523, 557
BstMWI	GCNNNNNNNGC	3 cut(s)	184, 244, 346
BstNI	CCWGG	2 cut(s)	65, 300
BstNSI	RCATGY	2 cut(s)	54, 191
BstSCI	CCNGG	2 cut(s)	63, 298
BstSLI	GKGCMC	1 cut(s)	429
BstV1I	GCAGC	4 cut(s)	196, 217, 329, 445
BstV2I	GAAGAC	1 cut(s)	823
BstX2I	RGATCY	3 cut(s)	31, 485, 557
BstYI	RGATCY	3 cut(s)	31, 485, 557
BsuI	GTATCC	1 cut(s)	392
BsuRI	GGCC	1 cut(s)	547
BtsCI	GGATG	1 cut(s)	685
BtsI	GCAGTG	1 cut(s)	96
BtsIMutI	CAGTG	3 cut(s)	96, 640, 767
Cac8I	GCNNGC	1 cut(s)	157
CciI	TCATGA	1 cut(s)	520
Cfr13I	GGNCC	1 cut(s)	202
Csp6I	GTAC	1 cut(s)	741
CviAII	CATG	8 cut(s)	51, 166, 188, 254, 387, 521, 528, 653
CviQI	GTAC	1 cut(s)	741
DdeI	CTNAG	1 cut(s)	507
DpnI	GATC	6 cut(s)	33, 147, 170, 487, 525, 559
DpnII	GATC	6 cut(s)	31, 145, 168, 485, 523, 557
DraI	TTTAAA	1 cut(s)	721
Eco130I	CCWWGG	1 cut(s)	685
Eco47I	GGWCC	1 cut(s)	202
EcoNI	CCTNNNNNAGG	1 cut(s)	595
EcoRI	GAATTC	1 cut(s)	571
EcoRII	CCWGG	2 cut(s)	63, 298
EcoT14I	CCWWGG	1 cut(s)	685
EcoT22I	ATGCAT	2 cut(s)	180, 392
ErhI	CCWWGG	1 cut(s)	685
FaeI	CATG	8 cut(s)	54, 169, 191, 257, 390, 524, 531, 656
FatI	CATG	8 cut(s)	50, 165, 187, 253, 386, 520, 527, 652
FbaI	TGATCA	2 cut(s)	145, 168
Fnu4HI	GCNGC	5 cut(s)	185, 231, 318, 459, 494
FokI	GGATG	1 cut(s)	692
Fsp4HI	GCNGC	5 cut(s)	185, 231, 318, 459, 494
FspBI	CTAG	1 cut(s)	549
GluI	GCNGC	5 cut(s)	185, 231, 318, 459, 494
HaeIII	GGCC	1 cut(s)	547
Hin1I	GRCGYC	1 cut(s)	820
Hin1II	CATG	8 cut(s)	54, 169, 191, 257, 390, 524, 531, 656
HinfI	GANTC	3 cut(s)	14, 643, 764
Hpy166II	GTNNAC	2 cut(s)	427, 741
Hpy188I	TCNGA	1 cut(s)	80
Hpy188III	TCNNGA	4 cut(s)	143, 521, 761, 824
Hpy8I	GTNNAC	2 cut(s)	427, 741
Hpy99I	CGWCG	1 cut(s)	825
HpyAV	CCTTC	1 cut(s)	285
HpyCH4III	ACNGT	2 cut(s)	709, 771
HpyCH4IV	ACGT	2 cut(s)	354, 820
HpyCH4V	TGCA	8 cut(s)	74, 96, 155, 178, 317, 390, 427, 799
HpyF10VI	GCNNNNNNNGC	3 cut(s)	184, 244, 346
HpyF3I	CTNAG	1 cut(s)	507
HpySE526I	ACGT	2 cut(s)	354, 820
Hsp92I	GRCGYC	1 cut(s)	820
Hsp92II	CATG	8 cut(s)	54, 169, 191, 257, 390, 524, 531, 656
Ksp22I	TGATCA	2 cut(s)	145, 168
Kzo9I	GATC	6 cut(s)	31, 145, 168, 485, 523, 557
Lsp1109I	GCAGC	4 cut(s)	196, 217, 329, 445
LweI	GCATC	1 cut(s)	187
MaeI	CTAG	1 cut(s)	549
MaeII	ACGT	2 cut(s)	354, 820
MaeIII	GTNAC	2 cut(s)	530, 803
MalI	GATC	6 cut(s)	33, 147, 170, 487, 525, 559
MboI	GATC	6 cut(s)	31, 145, 168, 485, 523, 557
MboII	GAAGA	3 cut(s)	270, 350, 828
MflI	RGATCY	3 cut(s)	31, 485, 557
MhlI	GDGCHC	1 cut(s)	429
MluCI	AATT	6 cut(s)	463, 536, 571, 606, 666, 838
MlyI	GAGTC	1 cut(s)	758
MnlI	CCTC	7 cut(s)	258, 360, 450, 456, 516, 591, 601
Mph1103I	ATGCAT	2 cut(s)	180, 392
MseI	TTAA	5 cut(s)	405, 471, 501, 720, 812
MspR9I	CCNGG	2 cut(s)	65, 300
MvaI	CCWGG	2 cut(s)	65, 300
MwoI	GCNNNNNNNGC	3 cut(s)	184, 244, 346
NdeII	GATC	6 cut(s)	31, 145, 168, 485, 523, 557
NlaIII	CATG	8 cut(s)	54, 169, 191, 257, 390, 524, 531, 656
NlaIV	GGNNCC	2 cut(s)	582, 696
NsiI	ATGCAT	2 cut(s)	180, 392
NspI	RCATGY	2 cut(s)	54, 191
PagI	TCATGA	1 cut(s)	520
PfeI	GAWTC	2 cut(s)	14, 643
PkrI	GCNGC	5 cut(s)	186, 232, 319, 460, 495
PleI	GAGTC	1 cut(s)	758
PpsI	GAGTC	1 cut(s)	758
PshBI	ATTAAT	1 cut(s)	405
PsiI	TTATAA	2 cut(s)	57, 378
Psp6I	CCWGG	2 cut(s)	63, 298
PspGI	CCWGG	2 cut(s)	63, 298
PspN4I	GGNNCC	2 cut(s)	582, 696
PspPI	GGNCC	1 cut(s)	202
PsuI	RGATCY	3 cut(s)	31, 485, 557
RsaI	GTAC	1 cut(s)	742
RsaNI	GTAC	1 cut(s)	741
SaqAI	TTAA	5 cut(s)	405, 471, 501, 720, 812
SatI	GCNGC	5 cut(s)	185, 231, 318, 459, 494
Sau3AI	GATC	6 cut(s)	31, 145, 168, 485, 523, 557
Sau96I	GGNCC	1 cut(s)	202
SchI	GAGTC	1 cut(s)	758
ScrFI	CCNGG	2 cut(s)	65, 300
SduI	GDGCHC	1 cut(s)	429
SetI	ASST	9 cut(s)	196, 212, 337, 357, 421, 448, 508, 544, 823
SfaNI	GCATC	1 cut(s)	187
SinI	GGWCC	1 cut(s)	202
Sse9I	AATT	6 cut(s)	463, 536, 571, 606, 666, 838
SsiI	CCGC	2 cut(s)	323, 494
SspMI	CTAG	1 cut(s)	549
StyD4I	CCNGG	2 cut(s)	63, 298
StyI	CCWWGG	1 cut(s)	685
TaaI	ACNGT	2 cut(s)	709, 771
TaiI	ACGT	2 cut(s)	357, 823
TaqI	TCGA	2 cut(s)	448, 823
TasI	AATT	6 cut(s)	463, 536, 571, 606, 666, 838
TauI	GCSGC	1 cut(s)	496
TfiI	GAWTC	2 cut(s)	14, 643
Tru1I	TTAA	5 cut(s)	405, 471, 501, 720, 812
Tru9I	TTAA	5 cut(s)	405, 471, 501, 720, 812
TscAI	CASTG	3 cut(s)	103, 640, 774
TseI	GCWGC	4 cut(s)	184, 230, 317, 458
TspDTI	ATGAA	3 cut(s)	17, 97, 270
TspGWI	ACGGA	2 cut(s)	573, 758
TspRI	CASTG	3 cut(s)	103, 640, 774
VneI	GTGCAC	1 cut(s)	425
VpaK11BI	GGWCC	1 cut(s)	202
VspI	ATTAAT	1 cut(s)	405
XagI	CCTNNNNNAGG	1 cut(s)	595
XapI	RAATTY	1 cut(s)	571
XceI	RCATGY	2 cut(s)	54, 191
XspI	CTAG	1 cut(s)	549
ZraI	GACGTC	1 cut(s)	821
Zsp2I	ATGCAT	2 cut(s)	180, 392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.