Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0010535

Physical Location & Seq

Genomic Coordinates Reverse (-)

29836260 .. 29838281

Gene Structure 2022 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g29960.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGAATCATCACGCAGCTGGTAATGACCATAGGTCAAGATGTCTCAATCCTGCTGCCAAGCCTTTTCTGCCTCTGCATGAAAACCAACCTATTCCTTCTTCACTACAATCCTTCAAACCAGGCCAACGAGATGTTGCAGCACCGCCTTTTCAACCTATGCGACCCCAGCCTCACCTTCTTCCTGTTCATGGCTATTATAACCAGCCCTGCATCAGTGGATACAATAATCCAGTTCACGTTTTTGTGCAGCCAAACCAGCCTCAACCTGGATATCATGCTACCAATGTCTATAATCCTGTTATCGGACCTGTGCCGTTTTCTAAACCTCAGTTTCTTGGTCAGGATCCATATCACCAATTAGGTCAGCCAAGTATGGGATTTCACTCTTTGAATTCAGGGGTTCCATCAGCCTCGTTGAGTGATAATATTGTGAAGCAAATTGAATATTATTTCAGTGATGAGAATCTGGCGCATGATTATTATCTGATTTCGCTGATGGATGACCAAGGGTGGGTTCCCATATCAACTGTCGCCAAGTTTAAAAGGGTCGAGAGAATGTGTACGGATATACCATTTATTCTTGACTCGCTTTTGTTTGGTTCAAGACTTGTAGAAGTGCAGGGGAATAAGATCAGAAGGCGTCGTGGTGGAGCGTGTAGTGGTAACCTTCGCAGTGAAAGTCATAAACAGATGCGAGGAAACATGTTAGAAGCAAAAATCTCCACAGGCAATATAAGAAGAGATGATGTGGAGTTTTCTGAGGGTAGAGCAGCAACCTCTCCTCTGGAAATGAATCTGCAGCTTCTTCACAATGGAGGAAGACATGGATCTATATACCGGAGGCTTGATCTAGAGACTCTCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000932 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005844 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010286 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0071704 GO:0090304 GO:1901360 GO:1901361 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

289

Amino Acids

32.36

Weight (kDa)

8.86

Isoelectric Point (pI)

61.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
La	PF05383	143 - 197	2.2e-22	La domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010535)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02470 FvH4_4g29920 FvH4_4g29960
malus_domestica	MD11G1176000.v1.1
prunus_persica	Prupe.3G218300_v2.0.a1
pyrus_communis	pycom17g09190
rosa_laevigata	RLG00000006380 RLG00000031169
rosa_multiflora	Rmu_sc0002682.1_g000003
rosa_roxburghii	Rroxscaffold_5G00379320
rosa_rugosa	Rorug04G0406200
rosa_samantha	Rh4BG370000 Rh4CG384100 Rh4DG364900 Rh5AG033300 Rh5BG031700 Rh5CG036000 Rh5DG032300
rosa_wichuraiana	Rw0G006370 Rw0G016310 Rw5G003070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	198
AciI	CCGC	1 cut(s)	143
AclWI	GGATC	3 cut(s)	338, 351, 835
AcsI	RAATTY	1 cut(s)	391
AcyI	GRCGYC	1 cut(s)	640
AfaI	GTAC	1 cut(s)	562
AfiI	CCNNNNNNNGG	5 cut(s)	188, 266, 302, 374, 511
AflIII	ACRYGT	1 cut(s)	702
AgsI	TTSAA	5 cut(s)	115, 152, 391, 443, 603
AhdI	GACNNNNNGTC	1 cut(s)	31
AjnI	CCWGG	2 cut(s)	118, 265
AjuI	GAANNNNNNNTTGG	2 cut(s)	498, 530
AluBI	AGCT	2 cut(s)	17, 802
AluI	AGCT	2 cut(s)	17, 802
Alw26I	GTCTC	2 cut(s)	47, 848
AlwI	GGATC	3 cut(s)	338, 351, 835
AoxI	GGCC	1 cut(s)	121
ApeKI	GCWGC	6 cut(s)	14, 53, 137, 247, 770, 799
ApoI	RAATTY	1 cut(s)	391
AspLEI	GCGC	1 cut(s)	472
AspS9I	GGNCC	1 cut(s)	305
AsuHPI	GGTGA	2 cut(s)	164, 344
AvaII	GGWCC	1 cut(s)	305
BamHI	GGATCC	1 cut(s)	343
BbsI	GAAGAC	1 cut(s)	826
BbvI	GCAGC	6 cut(s)	26, 40, 149, 259, 782, 811
BccI	CCATC	2 cut(s)	412, 490
BceAI	ACGGC	1 cut(s)	298
BciT130I	CCWGG	2 cut(s)	120, 267
BciVI	GTATCC	1 cut(s)	212
BcoDI	GTCTC	2 cut(s)	47, 848
BfaI	CTAG	1 cut(s)	851
BfmI	CTRYAG	1 cut(s)	797
BfuI	GTATCC	1 cut(s)	212
BisI	GCNGC	6 cut(s)	15, 54, 138, 248, 771, 800
BlsI	GCNGC	6 cut(s)	16, 55, 139, 249, 772, 801
Bme1390I	CCNGG	2 cut(s)	120, 267
Bme18I	GGWCC	1 cut(s)	305
BmeRI	GACNNNNNGTC	1 cut(s)	31
BmgT120I	GGNCC	1 cut(s)	305
BmiI	GGNNCC	3 cut(s)	345, 402, 516
BmrFI	CCNGG	2 cut(s)	120, 267
BmsI	GCATC	2 cut(s)	219, 681
BpiI	GAAGAC	1 cut(s)	826
BsaBI	GATNNNNATC	3 cut(s)	348, 462, 480
BsaHI	GRCGYC	1 cut(s)	640
BsaJI	CCNNGG	1 cut(s)	505
BsaWI	WCCGGW	1 cut(s)	837
Bsc4I	CCNNNNNNNGG	5 cut(s)	188, 266, 302, 374, 511
Bse1I	ACTGG	1 cut(s)	230
Bse8I	GATNNNNATC	3 cut(s)	348, 462, 480
BseBI	CCWGG	2 cut(s)	120, 267
BseDI	CCNNGG	1 cut(s)	505
BseGI	GGATG	1 cut(s)	505
BseJI	GATNNNNATC	3 cut(s)	348, 462, 480
BseLI	CCNNNNNNNGG	5 cut(s)	188, 266, 302, 374, 511
BseMII	CTCAG	2 cut(s)	341, 750
BseNI	ACTGG	1 cut(s)	230
BseRI	GAGGAG	1 cut(s)	771
BseXI	GCAGC	6 cut(s)	26, 40, 149, 259, 782, 811
BseYI	CCCAGC	1 cut(s)	165
BsgI	GTGCAG	2 cut(s)	266, 638
BshFI	GGCC	1 cut(s)	123
BsiSI	CCGG	1 cut(s)	838
BslI	CCNNNNNNNGG	5 cut(s)	188, 266, 302, 374, 511
BsmAI	GTCTC	2 cut(s)	47, 848
BsnI	GGCC	1 cut(s)	123
Bsp143I	GATC	4 cut(s)	343, 630, 827, 847
BspACI	CCGC	1 cut(s)	143
BspANI	GGCC	1 cut(s)	123
BspCNI	CTCAG	2 cut(s)	340, 751
BspLI	GGNNCC	3 cut(s)	345, 402, 516
BspMAI	CTGCAG	1 cut(s)	801
BspPI	GGATC	3 cut(s)	338, 351, 835
BsrI	ACTGG	1 cut(s)	230
BssECI	CCNNGG	1 cut(s)	505
BssMI	GATC	4 cut(s)	343, 630, 827, 847
BssNI	GRCGYC	1 cut(s)	640
BssT1I	CCWWGG	1 cut(s)	505
Bst2UI	CCWGG	2 cut(s)	120, 267
Bst4CI	ACNGT	1 cut(s)	529
Bst6I	CTCTTC	1 cut(s)	733
BstACI	GRCGYC	1 cut(s)	640
BstDEI	CTNAG	2 cut(s)	327, 759
BstEII	GGTNACC	1 cut(s)	662
BstF5I	GGATG	1 cut(s)	505
BstHHI	GCGC	1 cut(s)	472
BstKTI	GATC	4 cut(s)	346, 633, 830, 850
BstMAI	GTCTC	2 cut(s)	47, 848
BstMBI	GATC	4 cut(s)	343, 630, 827, 847
BstMWI	GCNNNNNNNGC	3 cut(s)	67, 166, 256
BstNI	CCWGG	2 cut(s)	120, 267
BstNSI	RCATGY	1 cut(s)	706
BstPI	GGTNACC	1 cut(s)	662
BstSCI	CCNGG	2 cut(s)	118, 265
BstSFI	CTRYAG	1 cut(s)	797
BstV1I	GCAGC	6 cut(s)	26, 40, 149, 259, 782, 811
BstV2I	GAAGAC	1 cut(s)	826
BstX2I	RGATCY	2 cut(s)	343, 827
BstYI	RGATCY	2 cut(s)	343, 827
BsuI	GTATCC	1 cut(s)	212
BsuRI	GGCC	1 cut(s)	123
BtsCI	GGATG	1 cut(s)	505
BtsI	GCAGTG	1 cut(s)	679
BtsIMutI	CAGTG	3 cut(s)	220, 460, 679
CfoI	GCGC	1 cut(s)	472
Cfr13I	GGNCC	1 cut(s)	305
CseI	GACGC	1 cut(s)	629
Csp6I	GTAC	1 cut(s)	561
CviAII	CATG	6 cut(s)	77, 188, 275, 473, 703, 824
CviQI	GTAC	1 cut(s)	561
DdeI	CTNAG	2 cut(s)	327, 759
DpnI	GATC	4 cut(s)	345, 632, 829, 849
DpnII	GATC	4 cut(s)	343, 630, 827, 847
DraI	TTTAAA	1 cut(s)	541
DriI	GACNNNNNGTC	1 cut(s)	31
Eam1104I	CTCTTC	1 cut(s)	733
Eam1105I	GACNNNNNGTC	1 cut(s)	31
EarI	CTCTTC	1 cut(s)	733
Eco130I	CCWWGG	1 cut(s)	505
Eco32I	GATATC	1 cut(s)	272
Eco47I	GGWCC	1 cut(s)	305
Eco91I	GGTNACC	1 cut(s)	662
EcoO65I	GGTNACC	1 cut(s)	662
EcoRI	GAATTC	1 cut(s)	391
EcoRII	CCWGG	2 cut(s)	118, 265
EcoRV	GATATC	1 cut(s)	272
EcoT14I	CCWWGG	1 cut(s)	505
ErhI	CCWWGG	1 cut(s)	505
FaeI	CATG	6 cut(s)	80, 191, 278, 476, 706, 827
FatI	CATG	6 cut(s)	76, 187, 274, 472, 702, 823
Fnu4HI	GCNGC	6 cut(s)	15, 54, 138, 248, 771, 800
FokI	GGATG	1 cut(s)	512
Fsp4HI	GCNGC	6 cut(s)	15, 54, 138, 248, 771, 800
FspBI	CTAG	1 cut(s)	851
GlaI	GCGC	1 cut(s)	471
GluI	GCNGC	6 cut(s)	15, 54, 138, 248, 771, 800
GsaI	CCCAGC	1 cut(s)	169
HaeIII	GGCC	1 cut(s)	123
HapII	CCGG	1 cut(s)	838
HgaI	GACGC	1 cut(s)	629
HhaI	GCGC	1 cut(s)	472
Hin1I	GRCGYC	1 cut(s)	640
Hin1II	CATG	6 cut(s)	80, 191, 278, 476, 706, 827
Hin6I	GCGC	1 cut(s)	470
HinP1I	GCGC	1 cut(s)	470
HinfI	GANTC	5 cut(s)	4, 463, 584, 793, 856
HpaII	CCGG	1 cut(s)	838
HphI	GGTGA	2 cut(s)	164, 344
Hpy166II	GTNNAC	2 cut(s)	235, 561
Hpy188I	TCNGA	4 cut(s)	305, 486, 635, 760
Hpy188III	TCNNGA	7 cut(s)	36, 341, 550, 581, 603, 785, 851
Hpy8I	GTNNAC	2 cut(s)	235, 561
Hpy99I	CGWCG	1 cut(s)	645
HpyAV	CCTTC	5 cut(s)	105, 121, 185, 630, 677
HpyCH4III	ACNGT	1 cut(s)	529
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	6 cut(s)	76, 137, 210, 247, 619, 799
HpyF10VI	GCNNNNNNNGC	3 cut(s)	67, 166, 256
HpyF3I	CTNAG	2 cut(s)	327, 759
HpySE526I	ACGT	1 cut(s)	237
Hsp92I	GRCGYC	1 cut(s)	640
Hsp92II	CATG	6 cut(s)	80, 191, 278, 476, 706, 827
HspAI	GCGC	1 cut(s)	470
Kzo9I	GATC	4 cut(s)	343, 630, 827, 847
LmnI	GCTCC	1 cut(s)	650
Lsp1109I	GCAGC	6 cut(s)	26, 40, 149, 259, 782, 811
LweI	GCATC	2 cut(s)	219, 681
MaeI	CTAG	1 cut(s)	851
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	1 cut(s)	662
MalI	GATC	4 cut(s)	345, 632, 829, 849
MboI	GATC	4 cut(s)	343, 630, 827, 847
MboII	GAAGA	5 cut(s)	90, 170, 750, 797, 831
MflI	RGATCY	2 cut(s)	343, 827
MluCI	AATT	3 cut(s)	356, 391, 438
MlyI	GAGTC	2 cut(s)	578, 850
MseI	TTAA	1 cut(s)	540
MspA1I	CMGCKG	1 cut(s)	17
MspI	CCGG	1 cut(s)	838
MspR9I	CCNGG	2 cut(s)	120, 267
MvaI	CCWGG	2 cut(s)	120, 267
MwoI	GCNNNNNNNGC	3 cut(s)	67, 166, 256
NdeII	GATC	4 cut(s)	343, 630, 827, 847
NlaIII	CATG	6 cut(s)	80, 191, 278, 476, 706, 827
NlaIV	GGNNCC	3 cut(s)	345, 402, 516
NspI	RCATGY	1 cut(s)	706
PciI	ACATGT	1 cut(s)	702
PfeI	GAWTC	3 cut(s)	4, 463, 793
PkrI	GCNGC	6 cut(s)	16, 55, 139, 249, 772, 801
PleI	GAGTC	2 cut(s)	578, 850
PpsI	GAGTC	2 cut(s)	578, 850
PscI	ACATGT	1 cut(s)	702
PsiI	TTATAA	1 cut(s)	198
Psp6I	CCWGG	2 cut(s)	118, 265
PspEI	GGTNACC	1 cut(s)	662
PspFI	CCCAGC	1 cut(s)	165
PspGI	CCWGG	2 cut(s)	118, 265
PspN4I	GGNNCC	3 cut(s)	345, 402, 516
PspPI	GGNCC	1 cut(s)	305
PstI	CTGCAG	1 cut(s)	801
PsuI	RGATCY	2 cut(s)	343, 827
PvuII	CAGCTG	1 cut(s)	17
RsaI	GTAC	1 cut(s)	562
RsaNI	GTAC	1 cut(s)	561
SaqAI	TTAA	1 cut(s)	540
SatI	GCNGC	6 cut(s)	15, 54, 138, 248, 771, 800
Sau3AI	GATC	4 cut(s)	343, 630, 827, 847
Sau96I	GGNCC	1 cut(s)	305
SchI	GAGTC	2 cut(s)	578, 850
ScrFI	CCNGG	2 cut(s)	120, 267
SfaNI	GCATC	2 cut(s)	219, 681
SfcI	CTRYAG	1 cut(s)	797
SinI	GGWCC	1 cut(s)	305
Sse9I	AATT	3 cut(s)	356, 391, 438
SsiI	CCGC	1 cut(s)	143
SspI	AATATT	2 cut(s)	427, 446
SspMI	CTAG	1 cut(s)	851
StyD4I	CCNGG	2 cut(s)	118, 265
StyI	CCWWGG	1 cut(s)	505
TaaI	ACNGT	1 cut(s)	529
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	1 cut(s)	549
TasI	AATT	3 cut(s)	356, 391, 438
TfiI	GAWTC	3 cut(s)	4, 463, 793
Tru1I	TTAA	1 cut(s)	540
Tru9I	TTAA	1 cut(s)	540
TscAI	CASTG	3 cut(s)	220, 460, 679
TseI	GCWGC	6 cut(s)	14, 53, 137, 247, 770, 799
TspDTI	ATGAA	4 cut(s)	17, 93, 176, 806
TspGWI	ACGGA	1 cut(s)	578
TspRI	CASTG	3 cut(s)	220, 460, 679
VpaK11BI	GGWCC	1 cut(s)	305
XapI	RAATTY	1 cut(s)	391
XbaI	TCTAGA	1 cut(s)	850
XceI	RCATGY	1 cut(s)	706
XcmI	CCANNNNNNNNNTGG	1 cut(s)	263
XspI	CTAG	1 cut(s)	851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.