Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0010535

Physical Location & Seq

Genomic Coordinates Reverse (-)

29817068 .. 29818378

Gene Structure 1311 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g29920.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGATGCCTCCGCAAGCCTGTAAGCTAGCCTCTTCAATGGCGACAATGACCTGCAAGCTAGCCTCTTCAATGACAACAATGCATCAGCAAGTTAGTAATGATCACATTACAAAAACTCTGAATCCTGCGGCCAAGCCCTTTTTGCCTCTGCATAGAGATTATTACTCAATGCCTTCCTCACTGCCATCTTATAACATCGCTCCGGCACCTCTTCTTCTTCCTAACTTCTACCAACCTTACATCCCATACTGTTACCTGCAGCCATGTCTTAATCAACCTCAACCTCAATGTTATACTGCCAATTTCTATAACCCTAGCTCTTTTGTTACCCCTCAGCTTTCTGGTCATGTTGCTCCTTGTTTCGTGCCGAATACAGGATGTCATTCTTCGGCTTCTAAGGACCCATTGAGGGCTAATATTCTCAAACAAATTGAGTACTATTTCAGTGATGAAAATCTGCAGCATGATAGGTACCTAATCTCGTTGATGGATGACAAAGGATGGGTTCCAGTATCTATCATCGCCACATTTAACAGGGTTAAAGCAATGTCTACATCTATACCTTTCATTCTTGATTCGTTGGTTGATTCTAGAATTCTGGAAGTCGAGGGTAACAAGATAAGGAGACGTGATGAGTGGCCAAAGTGGATTTCTTCTACTACAATAACCAAGCAAACAAATAAAGTTTCACCAGCTGAACAACAACCGGGACTTGAGATTGTCGTTCCCCAAGAAATACCTATCTCTGTTGGGAATACCAATGCGAATGGAGTGTTATCAGAGAAGATTCTGACTCCGATCTTAACCACATTGGCTGCTCCCCGAGGAGTAGAGTCTGCAAAAGAGTTTGCTCTTACTGAATCAAGTGAGCCTGTGTTGGAGGGACAAACTGAAGCCGGTGCGCATTGCACTAAGTCTATCAATGCAGCCAACTCTATACTTAGCACGCCAACTACGGCTACACCGATGAACCAACAAGGGAAAGTGGAGATTATGCCTCCATCTCTGCCATTTCGGCACGATACGGTGAAAGGAAAGGGACAGTTAGAGAGCTCATCATCTCCCAGGTACTTCAAGAAAGCTCAACTGATACGGCCATTGTTGGATTTTGAATTCGTTCGTGCTTATCTTGTAAAGGGTGATGAAGTGTTTGATGATGATAGATTCAGTGAGTATCGCCTGCAAACACAAAAGAAGAAACGAAAGGAGCTAGGAGAGGCTAAGTCTCCCCATATTACCTTCTCGGGCAGTTATCTTACTAGAAATAAAACAAGTACTATGAAGTTCAATCTCCAATTTATGTATGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000932 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005844 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010286 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0071704 GO:0090304 GO:1901360 GO:1901361 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

437

Amino Acids

48.8

Weight (kDa)

8.82

Isoelectric Point (pI)

59.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
La	PF05383	140 - 194	2.1e-22	La domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010535)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02470 FvH4_4g29920 FvH4_4g29960
malus_domestica	MD11G1176000.v1.1
prunus_persica	Prupe.3G218300_v2.0.a1
pyrus_communis	pycom17g09190
rosa_laevigata	RLG00000006380 RLG00000031169
rosa_multiflora	Rmu_sc0002682.1_g000003
rosa_roxburghii	Rroxscaffold_5G00379320
rosa_rugosa	Rorug04G0406200
rosa_samantha	Rh4BG370000 Rh4CG384100 Rh4DG364900 Rh5AG033300 Rh5BG031700 Rh5CG036000 Rh5DG032300
rosa_wichuraiana	Rw0G006370 Rw0G016310 Rw5G003070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	192
Acc16I	TGCGCA	1 cut(s)	903
Acc36I	ACCTGC	2 cut(s)	59, 264
Acc65I	GGTACC	1 cut(s)	471
AccB1I	GGYRCC	2 cut(s)	205, 471
AccI	GTMKAC	1 cut(s)	551
AciI	CCGC	2 cut(s)	11, 128
AcoI	YGGCCR	3 cut(s)	129, 638, 1094
AcsI	RAATTY	2 cut(s)	594, 1112
AcuI	CTGAAG	1 cut(s)	912
AfaI	GTAC	4 cut(s)	437, 473, 1070, 1276
AfiI	CCNNNNNNNGG	2 cut(s)	374, 409
AgsI	TTSAA	5 cut(s)	36, 69, 1075, 1112, 1288
AjiI	CACGTC	1 cut(s)	629
AjnI	CCWGG	1 cut(s)	1064
AjuI	GAANNNNNNNTTGG	2 cut(s)	634, 666
AluBI	AGCT	8 cut(s)	25, 58, 318, 337, 695, 1053, 1082, 1210
AluI	AGCT	8 cut(s)	25, 58, 318, 337, 695, 1053, 1082, 1210
Alw21I	GWGCWC	1 cut(s)	1055
Alw26I	GTCTC	2 cut(s)	619, 1230
Ama87I	CYCGRG	2 cut(s)	822, 1243
AoxI	GGCC	3 cut(s)	129, 638, 1094
ApeKI	GCWGC	4 cut(s)	259, 460, 815, 926
ApoI	RAATTY	2 cut(s)	594, 1112
Asp700I	GAANNNNTTC	1 cut(s)	1116
Asp718I	GGTACC	1 cut(s)	471
AspLEI	GCGC	1 cut(s)	904
AspS9I	GGNCC	1 cut(s)	400
AsuC2I	CCSGG	1 cut(s)	708
AsuHPI	GGTGA	3 cut(s)	681, 1039, 1151
AsuNHI	GCTAGC	2 cut(s)	25, 58
AvaI	CYCGRG	2 cut(s)	822, 1243
AvaII	GGWCC	1 cut(s)	400
BalI	TGGCCA	1 cut(s)	640
BanI	GGYRCC	2 cut(s)	205, 471
BanII	GRGCYC	1 cut(s)	1055
Bbv12I	GWGCWC	1 cut(s)	1055
BbvCI	CCTCAGC	1 cut(s)	333
BbvI	GCAGC	4 cut(s)	271, 472, 802, 938
BccI	CCATC	4 cut(s)	193, 481, 495, 1009
BceAI	ACGGC	2 cut(s)	972, 1109
BciT130I	CCWGG	1 cut(s)	1066
BclI	TGATCA	1 cut(s)	100
BcnI	CCSGG	1 cut(s)	708
BcoDI	GTCTC	2 cut(s)	619, 1230
BfaI	CTAG	6 cut(s)	26, 59, 315, 591, 1211, 1260
BfmI	CTRYAG	2 cut(s)	257, 458
BfuAI	ACCTGC	2 cut(s)	59, 264
BglI	GCCNNNNNGGC	1 cut(s)	1015
BisI	GCNGC	5 cut(s)	129, 260, 461, 816, 927
BlsI	GCNGC	5 cut(s)	130, 261, 462, 817, 928
BmcAI	AGTACT	2 cut(s)	437, 1276
Bme1390I	CCNGG	2 cut(s)	708, 1066
Bme18I	GGWCC	1 cut(s)	400
BmeT110I	CYCGRG	2 cut(s)	822, 1243
BmgBI	CACGTC	1 cut(s)	629
BmgT120I	GGNCC	1 cut(s)	400
BmiI	GGNNCC	4 cut(s)	207, 402, 473, 507
BmrFI	CCNGG	2 cut(s)	708, 1066
BmsI	GCATC	1 cut(s)	91
BmtI	GCTAGC	2 cut(s)	29, 62
Bpu10I	CCTNAGC	1 cut(s)	333
BpuEI	CTTGAG	1 cut(s)	734
BpuMI	CCSGG	1 cut(s)	708
BsaBI	GATNNNNATC	1 cut(s)	453
BsaJI	CCNNGG	2 cut(s)	823, 1064
Bsc4I	CCNNNNNNNGG	2 cut(s)	374, 409
Bse118I	RCCGGY	1 cut(s)	896
Bse1I	ACTGG	1 cut(s)	509
Bse3DI	GCAATG	2 cut(s)	552, 904
Bse8I	GATNNNNATC	1 cut(s)	453
BseBI	CCWGG	1 cut(s)	1066
BseDI	CCNNGG	2 cut(s)	823, 1064
BseGI	GGATG	4 cut(s)	240, 383, 496, 506
BseJI	GATNNNNATC	1 cut(s)	453
BseLI	CCNNNNNNNGG	2 cut(s)	374, 409
BseMI	GCAATG	2 cut(s)	552, 904
BseMII	CTCAG	1 cut(s)	347
BseNI	ACTGG	1 cut(s)	509
BseRI	GAGGAG	1 cut(s)	840
BseXI	GCAGC	4 cut(s)	271, 472, 802, 938
BshFI	GGCC	3 cut(s)	131, 640, 1096
BshNI	GGYRCC	2 cut(s)	205, 471
BsiHKAI	GWGCWC	1 cut(s)	1055
BsiHKCI	CYCGRG	2 cut(s)	822, 1243
BsiSI	CCGG	3 cut(s)	203, 707, 897
BslFI	GGGAC	3 cut(s)	723, 897, 1053
BslI	CCNNNNNNNGG	2 cut(s)	374, 409
BsmAI	GTCTC	2 cut(s)	619, 1230
BsmBI	CGTCTC	1 cut(s)	619
BsmFI	GGGAC	3 cut(s)	723, 897, 1053
BsnI	GGCC	3 cut(s)	131, 640, 1096
BsoBI	CYCGRG	2 cut(s)	822, 1243
Bsp1286I	GDGCHC	1 cut(s)	1055
Bsp143I	GATC	2 cut(s)	100, 798
BspACI	CCGC	2 cut(s)	11, 128
BspANI	GGCC	3 cut(s)	131, 640, 1096
BspCNI	CTCAG	1 cut(s)	346
BspLI	GGNNCC	4 cut(s)	207, 402, 473, 507
BspMAI	CTGCAG	2 cut(s)	261, 462
BspMI	ACCTGC	2 cut(s)	59, 264
BspOI	GCTAGC	2 cut(s)	29, 62
BspT107I	GGYRCC	2 cut(s)	205, 471
BsrDI	GCAATG	2 cut(s)	552, 904
BsrFI	RCCGGY	1 cut(s)	896
BsrI	ACTGG	1 cut(s)	509
BssAI	RCCGGY	1 cut(s)	896
BssECI	CCNNGG	2 cut(s)	823, 1064
BssMI	GATC	2 cut(s)	100, 798
Bst2UI	CCWGG	1 cut(s)	1066
Bst4CI	ACNGT	3 cut(s)	251, 1027, 1044
Bst6I	CTCTTC	3 cut(s)	37, 70, 216
BstC8I	GCNNGC	6 cut(s)	15, 27, 56, 60, 947, 1181
BstDEI	CTNAG	5 cut(s)	333, 396, 912, 941, 1221
BstF5I	GGATG	4 cut(s)	240, 383, 496, 506
BstHHI	GCGC	1 cut(s)	904
BstKTI	GATC	2 cut(s)	103, 801
BstMAI	GTCTC	2 cut(s)	619, 1230
BstMBI	GATC	2 cut(s)	100, 798
BstMWI	GCNNNNNNNGC	2 cut(s)	142, 1015
BstNI	CCWGG	1 cut(s)	1066
BstSCI	CCNGG	2 cut(s)	706, 1064
BstSFI	CTRYAG	2 cut(s)	257, 458
BstV1I	GCAGC	4 cut(s)	271, 472, 802, 938
BsuRI	GGCC	3 cut(s)	131, 640, 1096
BtgZI	GCGATG	2 cut(s)	181, 505
BtrI	CACGTC	1 cut(s)	629
BtsCI	GGATG	4 cut(s)	240, 383, 496, 506
BtsI	GCAGTG	1 cut(s)	179
BtsIMutI	CAGTG	3 cut(s)	179, 451, 1174
BveI	ACCTGC	2 cut(s)	59, 264
Cac8I	GCNNGC	6 cut(s)	15, 27, 56, 60, 947, 1181
CfoI	GCGC	1 cut(s)	904
Cfr10I	RCCGGY	1 cut(s)	896
Cfr13I	GGNCC	1 cut(s)	400
Csp6I	GTAC	4 cut(s)	436, 472, 1069, 1275
CviAII	CATG	3 cut(s)	264, 347, 464
CviQI	GTAC	4 cut(s)	436, 472, 1069, 1275
DdeI	CTNAG	5 cut(s)	333, 396, 912, 941, 1221
DpnI	GATC	2 cut(s)	102, 800
DpnII	GATC	2 cut(s)	100, 798
EaeI	YGGCCR	3 cut(s)	129, 638, 1094
Eam1104I	CTCTTC	3 cut(s)	37, 70, 216
EarI	CTCTTC	3 cut(s)	37, 70, 216
Ecl136II	GAGCTC	1 cut(s)	1053
Eco24I	GRGCYC	1 cut(s)	1055
Eco47I	GGWCC	1 cut(s)	400
Eco53kI	GAGCTC	1 cut(s)	1053
Eco57I	CTGAAG	1 cut(s)	912
Eco88I	CYCGRG	2 cut(s)	822, 1243
EcoICRI	GAGCTC	1 cut(s)	1053
EcoO109I	RGGNCCY	1 cut(s)	400
EcoRI	GAATTC	2 cut(s)	594, 1112
EcoRII	CCWGG	1 cut(s)	1064
EcoT22I	ATGCAT	1 cut(s)	84
EcoT38I	GRGCYC	1 cut(s)	1055
Esp3I	CGTCTC	1 cut(s)	619
FaeI	CATG	3 cut(s)	267, 350, 467
FaqI	GGGAC	3 cut(s)	723, 897, 1053
FatI	CATG	3 cut(s)	263, 346, 463
FbaI	TGATCA	1 cut(s)	100
FblI	GTMKAC	1 cut(s)	551
Fnu4HI	GCNGC	5 cut(s)	129, 260, 461, 816, 927
FokI	GGATG	4 cut(s)	227, 390, 503, 513
FriOI	GRGCYC	1 cut(s)	1055
Fsp4HI	GCNGC	5 cut(s)	129, 260, 461, 816, 927
FspAI	RTGCGCAY	1 cut(s)	903
FspBI	CTAG	6 cut(s)	26, 59, 315, 591, 1211, 1260
FspI	TGCGCA	1 cut(s)	903
GlaI	GCGC	1 cut(s)	903
GluI	GCNGC	5 cut(s)	129, 260, 461, 816, 927
HaeIII	GGCC	3 cut(s)	131, 640, 1096
HapII	CCGG	3 cut(s)	203, 707, 897
HhaI	GCGC	1 cut(s)	904
Hin1II	CATG	3 cut(s)	267, 350, 467
Hin6I	GCGC	1 cut(s)	902
HinP1I	GCGC	1 cut(s)	902
HinfI	GANTC	8 cut(s)	121, 575, 587, 787, 793, 833, 860, 1164
HpaII	CCGG	3 cut(s)	203, 707, 897
HphI	GGTGA	3 cut(s)	681, 1039, 1151
Hpy166II	GTNNAC	1 cut(s)	552
Hpy188I	TCNGA	4 cut(s)	120, 781, 792, 798
Hpy188III	TCNNGA	4 cut(s)	572, 591, 599, 1075
Hpy8I	GTNNAC	1 cut(s)	552
HpyAV	CCTTC	2 cut(s)	183, 1249
HpyCH4III	ACNGT	3 cut(s)	251, 1027, 1044
HpyCH4IV	ACGT	1 cut(s)	628
HpyCH4V	TGCA	9 cut(s)	54, 82, 151, 259, 460, 839, 909, 926, 1183
HpyF10VI	GCNNNNNNNGC	2 cut(s)	142, 1015
HpyF3I	CTNAG	5 cut(s)	333, 396, 912, 941, 1221
HpySE526I	ACGT	1 cut(s)	628
Hsp92II	CATG	3 cut(s)	267, 350, 467
HspAI	GCGC	1 cut(s)	902
KpnI	GGTACC	1 cut(s)	475
Ksp22I	TGATCA	1 cut(s)	100
Kzo9I	GATC	2 cut(s)	100, 798
LmnI	GCTCC	4 cut(s)	205, 358, 823, 1207
Lsp1109I	GCAGC	4 cut(s)	271, 472, 802, 938
LweI	GCATC	1 cut(s)	91
MaeI	CTAG	6 cut(s)	26, 59, 315, 591, 1211, 1260
MaeII	ACGT	1 cut(s)	628
MaeIII	GTNAC	3 cut(s)	251, 325, 611
MalI	GATC	2 cut(s)	102, 800
MboI	GATC	2 cut(s)	100, 798
MboII	GAAGA	9 cut(s)	24, 57, 203, 206, 209, 378, 645, 796, 1207
MhlI	GDGCHC	1 cut(s)	1055
MlsI	TGGCCA	1 cut(s)	640
MluCI	AATT	5 cut(s)	301, 429, 594, 1112, 1295
MluNI	TGGCCA	1 cut(s)	640
MlyI	GAGTC	2 cut(s)	787, 842
MmeI	TCCRAC	2 cut(s)	858, 1083
Mox20I	TGGCCA	1 cut(s)	640
Mph1103I	ATGCAT	1 cut(s)	84
MroXI	GAANNNNTTC	1 cut(s)	1116
MscI	TGGCCA	1 cut(s)	640
MseI	TTAA	4 cut(s)	270, 531, 540, 803
Msp20I	TGGCCA	1 cut(s)	640
MspA1I	CMGCKG	1 cut(s)	695
MspI	CCGG	3 cut(s)	203, 707, 897
MspR9I	CCNGG	2 cut(s)	708, 1066
MvaI	CCWGG	1 cut(s)	1066
MwoI	GCNNNNNNNGC	2 cut(s)	142, 1015
NciI	CCSGG	1 cut(s)	708
NdeII	GATC	2 cut(s)	100, 798
NheI	GCTAGC	2 cut(s)	25, 58
NlaIII	CATG	3 cut(s)	267, 350, 467
NlaIV	GGNNCC	4 cut(s)	207, 402, 473, 507
NsbI	TGCGCA	1 cut(s)	903
NsiI	ATGCAT	1 cut(s)	84
PcsI	WCGNNNNNNNCGW	1 cut(s)	962
PdmI	GAANNNNTTC	1 cut(s)	1116
PfeI	GAWTC	6 cut(s)	121, 575, 587, 787, 860, 1164
PkrI	GCNGC	5 cut(s)	130, 261, 462, 817, 928
PleI	GAGTC	2 cut(s)	787, 841
PpsI	GAGTC	2 cut(s)	787, 841
PpuMI	RGGWCCY	1 cut(s)	400
PsiI	TTATAA	1 cut(s)	192
Psp124BI	GAGCTC	1 cut(s)	1055
Psp5II	RGGWCCY	1 cut(s)	400
Psp6I	CCWGG	1 cut(s)	1064
PspGI	CCWGG	1 cut(s)	1064
PspN4I	GGNNCC	4 cut(s)	207, 402, 473, 507
PspPI	GGNCC	1 cut(s)	400
PspPPI	RGGWCCY	1 cut(s)	400
PstI	CTGCAG	2 cut(s)	261, 462
PvuII	CAGCTG	1 cut(s)	695
RsaI	GTAC	4 cut(s)	437, 473, 1070, 1276
RsaNI	GTAC	4 cut(s)	436, 472, 1069, 1275
SacI	GAGCTC	1 cut(s)	1055
SaqAI	TTAA	4 cut(s)	270, 531, 540, 803
SatI	GCNGC	5 cut(s)	129, 260, 461, 816, 927
Sau3AI	GATC	2 cut(s)	100, 798
Sau96I	GGNCC	1 cut(s)	400
ScaI	AGTACT	2 cut(s)	437, 1276
SchI	GAGTC	2 cut(s)	787, 842
ScrFI	CCNGG	2 cut(s)	708, 1066
SduI	GDGCHC	1 cut(s)	1055
SfaNI	GCATC	1 cut(s)	91
SfcI	CTRYAG	2 cut(s)	257, 458
SinI	GGWCC	1 cut(s)	400
SmlI	CTYRAG	1 cut(s)	713
SmoI	CTYRAG	1 cut(s)	713
Sse9I	AATT	5 cut(s)	301, 429, 594, 1112, 1295
SsiI	CCGC	2 cut(s)	11, 128
SspI	AATATT	1 cut(s)	418
SspMI	CTAG	6 cut(s)	26, 59, 315, 591, 1211, 1260
SstI	GAGCTC	1 cut(s)	1055
StyD4I	CCNGG	2 cut(s)	706, 1064
TaaI	ACNGT	3 cut(s)	251, 1027, 1044
TaiI	ACGT	1 cut(s)	631
TaqI	TCGA	1 cut(s)	606
TasI	AATT	5 cut(s)	301, 429, 594, 1112, 1295
TatI	WGTACW	2 cut(s)	435, 1274
TauI	GCSGC	1 cut(s)	131
TfiI	GAWTC	6 cut(s)	121, 575, 587, 787, 860, 1164
Tru1I	TTAA	4 cut(s)	270, 531, 540, 803
Tru9I	TTAA	4 cut(s)	270, 531, 540, 803
TscAI	CASTG	3 cut(s)	186, 451, 1174
TseI	GCWGC	4 cut(s)	259, 460, 815, 926
TspDTI	ATGAA	5 cut(s)	465, 556, 983, 1158, 1295
TspRI	CASTG	3 cut(s)	186, 451, 1174
VpaK11BI	GGWCC	1 cut(s)	400
XapI	RAATTY	2 cut(s)	594, 1112
XbaI	TCTAGA	1 cut(s)	590
XmiI	GTMKAC	1 cut(s)	551
XmnI	GAANNNNTTC	1 cut(s)	1116
XspI	CTAG	6 cut(s)	26, 59, 315, 591, 1211, 1260
ZrmI	AGTACT	2 cut(s)	437, 1276
Zsp2I	ATGCAT	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.