Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0010535

Physical Location & Seq

Genomic Coordinates Reverse (-)

21993415 .. 21994212

Gene Structure 798 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G218300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGAAGCCCTACGCTGCCACAAAGCTTTCTGCTGATGCGAAGCCTTTTTCACCCCTCTCGCCTCACCTCCATCAACCACCGCCGCAACATCATCTGCCTCATGTTCCTGTTCAAGCTTCTCTGCATCACCCAGTATTTTACCAACCGCAATATTATGAGCCAAGTAATTTTTCTGGTGGTGGCCATTGGAGTTGGCAATCTCCTCAGTATCACCAATTAGGGTTTAACAACATTCCTGTGCATCATGGTGTTGGGTTTTGTTATGGTCCTCCTCCGGTACCATTCGTGTACGATCAAGGTCTTCCGCAGTTTAACATGCAGACTTTGAGGAACAAAATTGTTCAACAAGTGGAATACTATTTCAGTGATGAAAATCTTTGCAAGGATTATTTCTTGAGATCACTGATGGATAACAAAGGATGGGTTCCGATATCCAACGTTGCTGAATTTAACAAGCTCAAGAGAATGTGCACAAACATACCATTTATCCTTGATGTTCTGATGCAGCGCTCAACTCGTGTAGAAGTGCATGGTCACATGATACGACGACGTAATGAGTGGCAAAGGTGGCTTCCGGTTTCTGCAGGCTCAACGACAAACCCGCAAACTCAAGTTTCCTTGGAGGAGAAGGAATTCATGGAAAGCCTGCTAGTAAAGAACGTATATGGCGATGATGTTGCTGTTGAGTTTGATGGTGGGTCGGTTGTGTATAATGCTTCTAATGGTGGTTTAAGTGGAAGACGAGCAGCCCCGGCCATGAAGACAGAGTGGAAGCCCAAGGCTTTCAAGTGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000932 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005844 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010286 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0071704 GO:0090304 GO:1901360 GO:1901361 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

266

Amino Acids

30.28

Weight (kDa)

8.72

Isoelectric Point (pI)

59.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010535)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02470 FvH4_4g29920 FvH4_4g29960
malus_domestica	MD11G1176000.v1.1
prunus_persica	Prupe.3G218300_v2.0.a1
pyrus_communis	pycom17g09190
rosa_laevigata	RLG00000006380 RLG00000031169
rosa_multiflora	Rmu_sc0002682.1_g000003
rosa_roxburghii	Rroxscaffold_5G00379320
rosa_rugosa	Rorug04G0406200
rosa_samantha	Rh4BG370000 Rh4CG384100 Rh4DG364900 Rh5AG033300 Rh5BG031700 Rh5CG036000 Rh5DG032300
rosa_wichuraiana	Rw0G006370 Rw0G016310 Rw5G003070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	277
AccB1I	GGYRCC	1 cut(s)	277
AciI	CCGC	5 cut(s)	80, 83, 146, 305, 602
AclI	AACGTT	1 cut(s)	438
AcoI	YGGCCR	2 cut(s)	181, 753
AcsI	RAATTY	2 cut(s)	446, 632
AfaI	GTAC	2 cut(s)	279, 290
AfeI	AGCGCT	1 cut(s)	509
AgsI	TTSAA	3 cut(s)	113, 344, 787
AjuI	GAANNNNNNNTTGG	2 cut(s)	154, 186
AluBI	AGCT	3 cut(s)	25, 116, 457
AluI	AGCT	3 cut(s)	25, 116, 457
Alw21I	GWGCWC	1 cut(s)	473
Alw44I	GTGCAC	1 cut(s)	469
Aor51HI	AGCGCT	1 cut(s)	509
AoxI	GGCC	2 cut(s)	181, 753
ApaLI	GTGCAC	1 cut(s)	469
ApeKI	GCWGC	3 cut(s)	14, 505, 746
ApoI	RAATTY	2 cut(s)	446, 632
Asp700I	GAANNNNTTC	1 cut(s)	632
Asp718I	GGTACC	1 cut(s)	277
AspLEI	GCGC	1 cut(s)	510
AspS9I	GGNCC	1 cut(s)	266
AsuC2I	CCSGG	1 cut(s)	752
AsuHPI	GGTGA	4 cut(s)	42, 56, 119, 203
AvaII	GGWCC	1 cut(s)	266
BaeGI	GKGCMC	1 cut(s)	473
BalI	TGGCCA	1 cut(s)	183
BanI	GGYRCC	1 cut(s)	277
BauI	CACGAG	1 cut(s)	516
BbsI	GAAGAC	3 cut(s)	293, 745, 767
Bbv12I	GWGCWC	1 cut(s)	473
BbvI	GCAGC	2 cut(s)	517, 758
BccI	CCATC	4 cut(s)	78, 400, 414, 686
BcgI	CGANNNNNNTGC	2 cut(s)	659, 693
BcnI	CCSGG	1 cut(s)	752
BfaI	CTAG	1 cut(s)	650
BfmI	CTRYAG	1 cut(s)	582
BfoI	RGCGCY	1 cut(s)	511
BisI	GCNGC	4 cut(s)	15, 83, 506, 747
BlsI	GCNGC	4 cut(s)	16, 84, 507, 748
Bme1390I	CCNGG	1 cut(s)	752
Bme18I	GGWCC	1 cut(s)	266
BmgT120I	GGNCC	1 cut(s)	266
BmiI	GGNNCC	2 cut(s)	279, 426
BmrFI	CCNGG	1 cut(s)	752
BmrI	ACTGGG	1 cut(s)	125
BmsI	GCATC	4 cut(s)	25, 133, 250, 492
BmuI	ACTGGG	1 cut(s)	125
BpiI	GAAGAC	3 cut(s)	293, 745, 767
BpuEI	CTTGAG	3 cut(s)	415, 443, 594
BpuMI	CCSGG	1 cut(s)	752
BsaBI	GATNNNNATC	1 cut(s)	372
BsaJI	CCNNGG	3 cut(s)	618, 750, 777
BsaWI	WCCGGW	2 cut(s)	274, 574
Bse1I	ACTGG	1 cut(s)	131
Bse8I	GATNNNNATC	1 cut(s)	372
BseDI	CCNNGG	3 cut(s)	618, 750, 777
BseGI	GGATG	1 cut(s)	425
BseJI	GATNNNNATC	1 cut(s)	372
BseMII	CTCAG	1 cut(s)	218
BseNI	ACTGG	1 cut(s)	131
BseRI	GAGGAG	3 cut(s)	192, 261, 638
BseSI	GKGCMC	1 cut(s)	473
BseXI	GCAGC	2 cut(s)	517, 758
BshFI	GGCC	2 cut(s)	183, 755
BshNI	GGYRCC	1 cut(s)	277
BsiHKAI	GWGCWC	1 cut(s)	473
BsiSI	CCGG	3 cut(s)	275, 575, 752
BsnI	GGCC	2 cut(s)	183, 755
Bsp1286I	GDGCHC	1 cut(s)	473
Bsp143I	GATC	2 cut(s)	292, 398
BspACI	CCGC	5 cut(s)	80, 83, 146, 305, 602
BspANI	GGCC	2 cut(s)	183, 755
BspCNI	CTCAG	1 cut(s)	217
BspLI	GGNNCC	2 cut(s)	279, 426
BspMAI	CTGCAG	1 cut(s)	586
BspT107I	GGYRCC	1 cut(s)	277
BsrI	ACTGG	1 cut(s)	131
BssECI	CCNNGG	3 cut(s)	618, 750, 777
BssMI	GATC	2 cut(s)	292, 398
BssSI	CACGAG	1 cut(s)	516
BssT1I	CCWWGG	2 cut(s)	618, 777
Bst2BI	CACGAG	1 cut(s)	516
BstC8I	GCNNGC	2 cut(s)	586, 647
BstDEI	CTNAG	1 cut(s)	204
BstF5I	GGATG	1 cut(s)	425
BstH2I	RGCGCY	1 cut(s)	511
BstHHI	GCGC	1 cut(s)	510
BstKTI	GATC	2 cut(s)	295, 401
BstMBI	GATC	2 cut(s)	292, 398
BstMWI	GCNNNNNNNGC	2 cut(s)	568, 752
BstNSI	RCATGY	1 cut(s)	319
BstSCI	CCNGG	1 cut(s)	750
BstSFI	CTRYAG	1 cut(s)	582
BstSLI	GKGCMC	1 cut(s)	473
BstV1I	GCAGC	2 cut(s)	517, 758
BstV2I	GAAGAC	3 cut(s)	293, 745, 767
BsuRI	GGCC	2 cut(s)	183, 755
BtgZI	GCGATG	1 cut(s)	684
BtsCI	GGATG	1 cut(s)	425
BtsIMutI	CAGTG	2 cut(s)	370, 401
Cac8I	GCNNGC	2 cut(s)	586, 647
CfoI	GCGC	1 cut(s)	510
Cfr13I	GGNCC	1 cut(s)	266
Csp6I	GTAC	2 cut(s)	278, 289
CviAII	CATG	7 cut(s)	101, 245, 316, 530, 538, 637, 757
CviQI	GTAC	2 cut(s)	278, 289
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	2 cut(s)	294, 400
DpnII	GATC	2 cut(s)	292, 398
EaeI	YGGCCR	2 cut(s)	181, 753
Eco130I	CCWWGG	2 cut(s)	618, 777
Eco32I	GATATC	1 cut(s)	432
Eco47I	GGWCC	1 cut(s)	266
Eco47III	AGCGCT	1 cut(s)	509
EcoRI	GAATTC	1 cut(s)	632
EcoRV	GATATC	1 cut(s)	432
EcoT14I	CCWWGG	2 cut(s)	618, 777
ErhI	CCWWGG	2 cut(s)	618, 777
FaeI	CATG	7 cut(s)	104, 248, 319, 533, 541, 640, 760
FatI	CATG	7 cut(s)	100, 244, 315, 529, 537, 636, 756
FauI	CCCGC	1 cut(s)	609
Fnu4HI	GCNGC	4 cut(s)	15, 83, 506, 747
FokI	GGATG	1 cut(s)	432
Fsp4HI	GCNGC	4 cut(s)	15, 83, 506, 747
FspBI	CTAG	1 cut(s)	650
GlaI	GCGC	1 cut(s)	509
GluI	GCNGC	4 cut(s)	15, 83, 506, 747
HaeII	RGCGCY	1 cut(s)	511
HaeIII	GGCC	2 cut(s)	183, 755
HapII	CCGG	3 cut(s)	275, 575, 752
HhaI	GCGC	1 cut(s)	510
Hin1II	CATG	7 cut(s)	104, 248, 319, 533, 541, 640, 760
Hin6I	GCGC	1 cut(s)	508
HinP1I	GCGC	1 cut(s)	508
HindIII	AAGCTT	2 cut(s)	23, 114
HpaII	CCGG	3 cut(s)	275, 575, 752
HphI	GGTGA	4 cut(s)	42, 56, 119, 203
Hpy166II	GTNNAC	2 cut(s)	289, 471
Hpy188I	TCNGA	2 cut(s)	429, 501
Hpy188III	TCNNGA	2 cut(s)	394, 460
Hpy8I	GTNNAC	2 cut(s)	289, 471
Hpy99I	CGWCG	2 cut(s)	549, 552
HpyAV	CCTTC	1 cut(s)	622
HpyCH4IV	ACGT	3 cut(s)	438, 550, 660
HpyCH4V	TGCA	8 cut(s)	124, 241, 319, 381, 471, 505, 529, 584
HpyF10VI	GCNNNNNNNGC	2 cut(s)	568, 752
HpyF3I	CTNAG	1 cut(s)	204
HpySE526I	ACGT	3 cut(s)	438, 550, 660
Hsp92II	CATG	7 cut(s)	104, 248, 319, 533, 541, 640, 760
HspAI	GCGC	1 cut(s)	508
KpnI	GGTACC	1 cut(s)	281
Kzo9I	GATC	2 cut(s)	292, 398
LpnPI	CCDG	9 cut(s)	120, 144, 159, 249, 288, 570, 588, 659, 765
Lsp1109I	GCAGC	2 cut(s)	517, 758
LweI	GCATC	4 cut(s)	25, 133, 250, 492
MaeI	CTAG	1 cut(s)	650
MaeII	ACGT	3 cut(s)	438, 550, 660
MaeIII	GTNAC	1 cut(s)	533
MalI	GATC	2 cut(s)	294, 400
MboI	GATC	2 cut(s)	292, 398
MboII	GAAGA	3 cut(s)	293, 750, 772
MhlI	GDGCHC	1 cut(s)	473
MlsI	TGGCCA	1 cut(s)	183
MluCI	AATT	5 cut(s)	166, 215, 336, 446, 632
MluNI	TGGCCA	1 cut(s)	183
MmeI	TCCRAC	1 cut(s)	459
MnlI	CCTC	9 cut(s)	65, 72, 77, 108, 213, 279, 282, 321, 616
Mox20I	TGGCCA	1 cut(s)	183
MroXI	GAANNNNTTC	1 cut(s)	632
MscI	TGGCCA	1 cut(s)	183
MseI	TTAA	4 cut(s)	225, 312, 450, 731
MslI	CAYNNNNRTG	2 cut(s)	236, 246
Msp20I	TGGCCA	1 cut(s)	183
MspI	CCGG	3 cut(s)	275, 575, 752
MspR9I	CCNGG	1 cut(s)	752
MwoI	GCNNNNNNNGC	2 cut(s)	568, 752
NciI	CCSGG	1 cut(s)	752
NdeII	GATC	2 cut(s)	292, 398
NlaIII	CATG	7 cut(s)	104, 248, 319, 533, 541, 640, 760
NlaIV	GGNNCC	2 cut(s)	279, 426
NmuCI	GTSAC	1 cut(s)	533
NspI	RCATGY	1 cut(s)	319
PcsI	WCGNNNNNNNCGW	1 cut(s)	666
PdmI	GAANNNNTTC	1 cut(s)	632
PkrI	GCNGC	4 cut(s)	16, 84, 507, 748
Psp1406I	AACGTT	1 cut(s)	438
PspN4I	GGNNCC	2 cut(s)	279, 426
PspPI	GGNCC	1 cut(s)	266
PstI	CTGCAG	1 cut(s)	586
RsaI	GTAC	2 cut(s)	279, 290
RsaNI	GTAC	2 cut(s)	278, 289
RseI	CAYNNNNRTG	2 cut(s)	236, 246
SaqAI	TTAA	4 cut(s)	225, 312, 450, 731
SatI	GCNGC	4 cut(s)	15, 83, 506, 747
Sau3AI	GATC	2 cut(s)	292, 398
Sau96I	GGNCC	1 cut(s)	266
ScrFI	CCNGG	1 cut(s)	752
SduI	GDGCHC	1 cut(s)	473
SetI	ASST	9 cut(s)	27, 69, 118, 301, 441, 459, 553, 569, 663
SfaNI	GCATC	4 cut(s)	25, 133, 250, 492
SfcI	CTRYAG	1 cut(s)	582
SinI	GGWCC	1 cut(s)	266
SmiMI	CAYNNNNRTG	2 cut(s)	236, 246
SmlI	CTYRAG	3 cut(s)	394, 458, 609
SmoI	CTYRAG	3 cut(s)	394, 458, 609
Sse9I	AATT	5 cut(s)	166, 215, 336, 446, 632
SsiI	CCGC	5 cut(s)	80, 83, 146, 305, 602
SspI	AATATT	1 cut(s)	152
SspMI	CTAG	1 cut(s)	650
StyD4I	CCNGG	1 cut(s)	750
StyI	CCWWGG	2 cut(s)	618, 777
TaiI	ACGT	3 cut(s)	441, 553, 663
TasI	AATT	5 cut(s)	166, 215, 336, 446, 632
TauI	GCSGC	1 cut(s)	85
Tru1I	TTAA	4 cut(s)	225, 312, 450, 731
Tru9I	TTAA	4 cut(s)	225, 312, 450, 731
TscAI	CASTG	2 cut(s)	370, 408
TseFI	GTSAC	1 cut(s)	533
TseI	GCWGC	3 cut(s)	14, 505, 746
Tsp45I	GTSAC	1 cut(s)	533
TspDTI	ATGAA	4 cut(s)	17, 384, 625, 773
TspRI	CASTG	2 cut(s)	370, 408
VneI	GTGCAC	1 cut(s)	469
VpaK11BI	GGWCC	1 cut(s)	266
XapI	RAATTY	2 cut(s)	446, 632
XceI	RCATGY	1 cut(s)	319
XmnI	GAANNNNTTC	1 cut(s)	632
XspI	CTAG	1 cut(s)	650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.