Rh5AG033300

La-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0010535
Physical Location & Seq
Reverse (-)
2269978 .. 2270911
934 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG033300.1

Sequence Viewer

Length: 603 bp
ATGATGATGATGCATCAGCAAGTTGGTAACAGAAGTGGTGCAAACTCATATGCACCTCCTTTTCTTCCTATGCTACATTATCAACCTCAGGTTCTTCCTCTTTCTGGGTATAACTACCAGCCATATCTTGCTGGATACCATCCTTTTGTGCACCAAACTACGCCTCAACCGCCATACTATGCTACCACATTTTATAATCCTGTAGAACCAGATTACTTTGGCGCTTTCGGAACTCGGCCTTCTGTTGAACCTCAGTTTTCTTGTCATGCTCCGAGTTTTATGCCAAATTTGGGATCTCATTCTTTGAATTCAAGGGATGCAGTAGCCTCGTTAAGGGGTGATATTATGAAGCAGGTAGAGTACTATTTTAGTGACGAAAATTTGAATAAGCCTGACCGTTACCTGATTTCGTTGATGGATGACAAAGGGTGGGTTCCAGTACCTATCATTGCCGGGTTTCATAGGGTTAAAGCAATGTGTAAATCTGTAACCTTCATTCTTGAGTCGCTGTTAGACTCGAGTATAGTAGAAGTCCGAGGTAACAGGATAAGAAGACGTGATGTGTGGTCAAAGTGGATTTCATCAGCTAAGCTAGCTACATGA

Protein Analysis

200

Amino Acids

22.8

Weight (kDa)

8.82

Isoelectric Point (pI)

56.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
La PF05383 115 - 170 3.8e-19 La domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 195
Acc36I ACCTGC 1 cut(s) 343
AciI CCGC 1 cut(s) 170
AclWI GGATC 1 cut(s) 301
AcsI RAATTY 3 cut(s) 286, 307, 379
AfaI GTAC 2 cut(s) 362, 441
AfiI CCNNNNNNNGG 3 cut(s) 104, 290, 333
AgsI TTSAA 4 cut(s) 248, 307, 312, 385
AjiI CACGTC 1 cut(s) 557
AluBI AGCT 3 cut(s) 587, 592, 596
AluI AGCT 3 cut(s) 587, 592, 596
Alw21I GWGCWC 1 cut(s) 153
Alw44I GTGCAC 1 cut(s) 149
AlwI GGATC 1 cut(s) 301
Ama87I CYCGRG 1 cut(s) 517
AoxI GGCC 1 cut(s) 236
ApaLI GTGCAC 1 cut(s) 149
ApoI RAATTY 3 cut(s) 286, 307, 379
AspLEI GCGC 1 cut(s) 224
AsuC2I CCSGG 1 cut(s) 454
AsuHPI GGTGA 1 cut(s) 350
AsuNHI GCTAGC 1 cut(s) 592
AvaI CYCGRG 1 cut(s) 517
AxyI CCTNAGG 1 cut(s) 87
BaeGI GKGCMC 1 cut(s) 153
BbsI GAAGAC 1 cut(s) 559
Bbv12I GWGCWC 1 cut(s) 153
BccI CCATC 2 cut(s) 147, 409
BcgI CGANNNNNNTGC 4 cut(s) 262, 296, 309, 343
BciVI GTATCC 1 cut(s) 128
BcnI CCSGG 1 cut(s) 454
BfaI CTAG 1 cut(s) 593
BfmI CTRYAG 1 cut(s) 201
BfoI RGCGCY 1 cut(s) 225
BfuAI ACCTGC 1 cut(s) 343
BfuI GTATCC 1 cut(s) 128
BlpI GCTNAGC 1 cut(s) 588
BmcAI AGTACT 1 cut(s) 362
Bme1390I CCNGG 1 cut(s) 454
BmeT110I CYCGRG 1 cut(s) 517
BmgBI CACGTC 1 cut(s) 557
BmiI GGNNCC 1 cut(s) 435
BmrFI CCNGG 1 cut(s) 454
BmsI GCATC 2 cut(s) 22, 307
BmtI GCTAGC 1 cut(s) 596
BpiI GAAGAC 1 cut(s) 559
Bpu1102I GCTNAGC 1 cut(s) 588
BpuEI CTTGAG 1 cut(s) 521
BpuMI CCSGG 1 cut(s) 454
BsaJI CCNNGG 1 cut(s) 535
Bsc4I CCNNNNNNNGG 3 cut(s) 104, 290, 333
Bse1I ACTGG 1 cut(s) 437
Bse21I CCTNAGG 1 cut(s) 87
Bse3DI GCAATG 2 cut(s) 447, 480
BseDI CCNNGG 1 cut(s) 535
BseGI GGATG 3 cut(s) 139, 322, 424
BseLI CCNNNNNNNGG 3 cut(s) 104, 290, 333
BseMI GCAATG 2 cut(s) 447, 480
BseMII CTCAG 2 cut(s) 101, 266
BseNI ACTGG 1 cut(s) 437
BseSI GKGCMC 1 cut(s) 153
BshFI GGCC 1 cut(s) 238
BsiHKAI GWGCWC 1 cut(s) 153
BsiHKCI CYCGRG 1 cut(s) 517
BsiSI CCGG 1 cut(s) 453
BslI CCNNNNNNNGG 3 cut(s) 104, 290, 333
BsnI GGCC 1 cut(s) 238
BsoBI CYCGRG 1 cut(s) 517
Bsp1286I GDGCHC 1 cut(s) 153
Bsp143I GATC 1 cut(s) 293
Bsp1720I GCTNAGC 1 cut(s) 588
BspACI CCGC 1 cut(s) 170
BspANI GGCC 1 cut(s) 238
BspCNI CTCAG 2 cut(s) 100, 265
BspLI GGNNCC 1 cut(s) 435
BspMI ACCTGC 1 cut(s) 343
BspOI GCTAGC 1 cut(s) 596
BspPI GGATC 1 cut(s) 301
BsrDI GCAATG 2 cut(s) 447, 480
BsrI ACTGG 1 cut(s) 437
BssECI CCNNGG 1 cut(s) 535
BssMI GATC 1 cut(s) 293
Bst4CI ACNGT 1 cut(s) 398
BstC8I GCNNGC 1 cut(s) 594
BstDEI CTNAG 3 cut(s) 87, 252, 588
BstENI CCTNNNNNAGG 1 cut(s) 331
BstF5I GGATG 3 cut(s) 139, 322, 424
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 1 cut(s) 224
BstKTI GATC 1 cut(s) 296
BstMBI GATC 1 cut(s) 293
BstMWI GCNNNNNNNGC 2 cut(s) 169, 593
BstSCI CCNGG 1 cut(s) 452
BstSFI CTRYAG 1 cut(s) 201
BstSLI GKGCMC 1 cut(s) 153
BstV2I GAAGAC 1 cut(s) 559
BstX2I RGATCY 1 cut(s) 293
BstYI RGATCY 1 cut(s) 293
Bsu36I CCTNAGG 1 cut(s) 87
BsuI GTATCC 1 cut(s) 128
BsuRI GGCC 1 cut(s) 238
BtrI CACGTC 1 cut(s) 557
BtsCI GGATG 3 cut(s) 139, 322, 424
BveI ACCTGC 1 cut(s) 343
Cac8I GCNNGC 1 cut(s) 594
CfoI GCGC 1 cut(s) 224
Csp6I GTAC 2 cut(s) 361, 440
CviAII CATG 2 cut(s) 266, 600
CviJI RGCY 7 cut(s) 121, 238, 326, 391, 587, 592, 596
CviKI_1 RGCY 7 cut(s) 121, 238, 326, 391, 587, 592, 596
CviQI GTAC 2 cut(s) 361, 440
DdeI CTNAG 3 cut(s) 87, 252, 588
DpnI GATC 1 cut(s) 295
DpnII GATC 1 cut(s) 293
Eco81I CCTNAGG 1 cut(s) 87
Eco88I CYCGRG 1 cut(s) 517
EcoNI CCTNNNNNAGG 1 cut(s) 331
EcoRI GAATTC 1 cut(s) 307
EcoT22I ATGCAT 1 cut(s) 15
FaeI CATG 2 cut(s) 269, 603
FatI CATG 2 cut(s) 265, 599
FauNDI CATATG 1 cut(s) 49
FokI GGATG 3 cut(s) 126, 329, 431
FspBI CTAG 1 cut(s) 593
GlaI GCGC 1 cut(s) 223
HaeII RGCGCY 1 cut(s) 225
HaeIII GGCC 1 cut(s) 238
HapII CCGG 1 cut(s) 453
HhaI GCGC 1 cut(s) 224
Hin1II CATG 2 cut(s) 269, 603
Hin6I GCGC 1 cut(s) 222
HinP1I GCGC 1 cut(s) 222
HinfI GANTC 2 cut(s) 503, 515
HpaII CCGG 1 cut(s) 453
HphI GGTGA 1 cut(s) 350
Hpy166II GTNNAC 1 cut(s) 151
Hpy188I TCNGA 3 cut(s) 230, 273, 536
Hpy188III TCNNGA 1 cut(s) 500
Hpy8I GTNNAC 1 cut(s) 151
HpyAV CCTTC 2 cut(s) 249, 502
HpyCH4III ACNGT 1 cut(s) 398
HpyCH4IV ACGT 1 cut(s) 556
HpyCH4V TGCA 5 cut(s) 13, 41, 53, 151, 320
HpyF10VI GCNNNNNNNGC 2 cut(s) 169, 593
HpyF3I CTNAG 3 cut(s) 87, 252, 588
HpySE526I ACGT 1 cut(s) 556
Hsp92II CATG 2 cut(s) 269, 603
HspAI GCGC 1 cut(s) 222
Kzo9I GATC 1 cut(s) 293
LmnI GCTCC 1 cut(s) 274
LweI GCATC 2 cut(s) 22, 307
MaeI CTAG 1 cut(s) 593
MaeII ACGT 1 cut(s) 556
MaeIII GTNAC 5 cut(s) 26, 371, 398, 487, 539
MalI GATC 1 cut(s) 295
MboI GATC 1 cut(s) 293
MboII GAAGA 3 cut(s) 56, 86, 564
MflI RGATCY 1 cut(s) 293
MhlI GDGCHC 1 cut(s) 153
MluCI AATT 3 cut(s) 286, 307, 379
MlyI GAGTC 2 cut(s) 509, 512
MnlI CCTC 7 cut(s) 66, 96, 108, 174, 261, 337, 530
Mph1103I ATGCAT 1 cut(s) 15
MseI TTAA 2 cut(s) 332, 468
MspI CCGG 1 cut(s) 453
MspR9I CCNGG 1 cut(s) 454
MwoI GCNNNNNNNGC 2 cut(s) 169, 593
NciI CCSGG 1 cut(s) 454
NdeI CATATG 1 cut(s) 49
NdeII GATC 1 cut(s) 293
NheI GCTAGC 1 cut(s) 592
NlaIII CATG 2 cut(s) 269, 603
NlaIV GGNNCC 1 cut(s) 435
NmeAIII GCCGAG 1 cut(s) 214
NmuCI GTSAC 1 cut(s) 371
NsiI ATGCAT 1 cut(s) 15
PaeR7I CTCGAG 1 cut(s) 517
PleI GAGTC 2 cut(s) 509, 511
PpsI GAGTC 2 cut(s) 509, 511
PsiI TTATAA 1 cut(s) 195
PspN4I GGNNCC 1 cut(s) 435
PspXI VCTCGAGB 1 cut(s) 517
PsuI RGATCY 1 cut(s) 293
RsaI GTAC 2 cut(s) 362, 441
RsaNI GTAC 2 cut(s) 361, 440
SaqAI TTAA 2 cut(s) 332, 468
Sau3AI GATC 1 cut(s) 293
ScaI AGTACT 1 cut(s) 362
SchI GAGTC 2 cut(s) 509, 512
ScrFI CCNGG 1 cut(s) 454
SduI GDGCHC 1 cut(s) 153
SfaNI GCATC 2 cut(s) 22, 307
SfcI CTRYAG 1 cut(s) 201
Sfr274I CTCGAG 1 cut(s) 517
SlaI CTCGAG 1 cut(s) 517
SmlI CTYRAG 2 cut(s) 500, 517
SmoI CTYRAG 2 cut(s) 500, 517
Sse9I AATT 3 cut(s) 286, 307, 379
SsiI CCGC 1 cut(s) 170
SspMI CTAG 1 cut(s) 593
StyD4I CCNGG 1 cut(s) 452
TaaI ACNGT 1 cut(s) 398
TaiI ACGT 1 cut(s) 559
TaqI TCGA 1 cut(s) 518
TasI AATT 3 cut(s) 286, 307, 379
TatI WGTACW 1 cut(s) 360
Tru1I TTAA 2 cut(s) 332, 468
Tru9I TTAA 2 cut(s) 332, 468
TseFI GTSAC 1 cut(s) 371
Tsp45I GTSAC 1 cut(s) 371
TspDTI ATGAA 4 cut(s) 362, 449, 484, 570
VneI GTGCAC 1 cut(s) 149
XagI CCTNNNNNAGG 1 cut(s) 331
XapI RAATTY 3 cut(s) 286, 307, 379
XhoI CTCGAG 1 cut(s) 517
XspI CTAG 1 cut(s) 593
ZrmI AGTACT 1 cut(s) 362
Zsp2I ATGCAT 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.