Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0010535

Physical Location & Seq

Genomic Coordinates Forward (+)

6949878 .. 6950672

Gene Structure 795 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g09190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGCCGATACGCGACGTCAAGACCCTCAACCCTATGAAATCCCACTCCGCCACGAAGCTCTCTGCCGATGCGAAAGCATTCTTTCCAGGAAAAACAAGCAGCCGTGATAAACAAAACCCTAATCGTTCACCTCTTTTTCCTCCACCCTTGCCCTACCACCAACAACACTATATTCCTCCTCCTATGTTTTATCACCGTACATCATGTCCTACACCGGTCAATCCGCAAATGCAGTGTGTTCAGTTTCCTCCGTTTTACTATGTTCCTTCTAATCCCGTGATCACGATTGACCAAGGCCTTACGGTTAATCCATGGGCTCCATTACCGCCACAAGATTTAGTGGTTTTGAGAAGTAATATCGTTAGGCAAATAGAGTATTATTTCAGTGATAAAAATCTAAAGAAGGATCATTACCTGATTTCGATTATGGATGACCAGGGATGGGTTTCGATATCCACTATCGCTGAATTTAAGAGACTCAAGAATATGTGCACCGACATACCGTTTATCCTTGATTCGCTGTTGTTGGGCTCGACCAGTGTGGAAGTGCAGGGTTACAAGATACGGCTACGGGACAATTGGTTGAAGTGGATTCCGGTTCATGCGGACTCTACCGTAACATCAAAACAGCATATTCAGCCGGAGCAACTTAGGTCTGCCAATAATCGTGATAAAATTGTTGACGGTTCTTCTGATGGAAAATATTCAACGGATCTCTTGCTATCGAGCACTGGACATGGCACTGCAGATAGTGTTCTTGATGGTGGATCTCTTGTGTTTACTACTGATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000932 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005844 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010286 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0071704 GO:0090304 GO:1901360 GO:1901361 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

265

Amino Acids

29.8

Weight (kDa)

8.65

Isoelectric Point (pI)

54.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
La	PF05383	120 - 174	1.9e-22	La domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010535)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02470 FvH4_4g29920 FvH4_4g29960
malus_domestica	MD11G1176000.v1.1
prunus_persica	Prupe.3G218300_v2.0.a1
pyrus_communis	pycom17g09190
rosa_laevigata	RLG00000006380 RLG00000031169
rosa_multiflora	Rmu_sc0002682.1_g000003
rosa_roxburghii	Rroxscaffold_5G00379320
rosa_rugosa	Rorug04G0406200
rosa_samantha	Rh4BG370000 Rh4CG384100 Rh4DG364900 Rh5AG033300 Rh5BG031700 Rh5CG036000 Rh5DG032300
rosa_wichuraiana	Rw0G006370 Rw0G016310 Rw5G003070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	18
AccII	CGCG	1 cut(s)	12
AciI	CCGC	4 cut(s)	48, 224, 326, 605
AclWI	GGATC	3 cut(s)	414, 720, 775
AcsI	RAATTY	1 cut(s)	467
AcyI	GRCGYC	1 cut(s)	15
AfaI	GTAC	1 cut(s)	199
AfiI	CCNNNNNNNGG	1 cut(s)	442
AgeI	ACCGGT	1 cut(s)	214
AgsI	TTSAA	2 cut(s)	586, 708
AjnI	CCWGG	2 cut(s)	85, 435
AluBI	AGCT	1 cut(s)	58
AluI	AGCT	1 cut(s)	58
Alw21I	GWGCWC	2 cut(s)	494, 731
Alw26I	GTCTC	1 cut(s)	469
Alw44I	GTGCAC	1 cut(s)	490
AlwI	GGATC	3 cut(s)	414, 720, 775
AoxI	GGCC	1 cut(s)	295
ApaLI	GTGCAC	1 cut(s)	490
ApeKI	GCWGC	1 cut(s)	99
ApoI	RAATTY	1 cut(s)	467
AsiGI	ACCGGT	1 cut(s)	214
Asp700I	GAANNNNTTC	2 cut(s)	77, 703
AsuHPI	GGTGA	2 cut(s)	120, 185
BaeGI	GKGCMC	1 cut(s)	494
BanII	GRGCYC	2 cut(s)	319, 533
BarI	GAAGNNNNNNTAC	2 cut(s)	395, 427
Bbv12I	GWGCWC	2 cut(s)	494, 731
BbvI	GCAGC	1 cut(s)	111
BccI	CCATC	3 cut(s)	435, 689, 755
BceAI	ACGGC	2 cut(s)	87, 581
BciT130I	CCWGG	2 cut(s)	87, 437
BclI	TGATCA	1 cut(s)	279
BcoDI	GTCTC	1 cut(s)	469
BfmI	CTRYAG	1 cut(s)	744
BisI	GCNGC	1 cut(s)	100
BlsI	GCNGC	1 cut(s)	101
Bme1390I	CCNGG	2 cut(s)	87, 437
BmiI	GGNNCC	1 cut(s)	318
BmrFI	CCNGG	2 cut(s)	87, 437
BmsI	GCATC	1 cut(s)	58
BpuEI	CTTGAG	1 cut(s)	464
BsaBI	GATNNNNATC	1 cut(s)	393
BsaHI	GRCGYC	1 cut(s)	15
BsaJI	CCNNGG	3 cut(s)	292, 311, 436
BsaWI	WCCGGW	2 cut(s)	214, 595
Bsc4I	CCNNNNNNNGG	1 cut(s)	442
Bse118I	RCCGGY	1 cut(s)	214
Bse1I	ACTGG	2 cut(s)	537, 736
Bse8I	GATNNNNATC	1 cut(s)	393
BseBI	CCWGG	2 cut(s)	87, 437
BseDI	CCNNGG	3 cut(s)	292, 311, 436
BseGI	GGATG	2 cut(s)	436, 446
BseJI	GATNNNNATC	1 cut(s)	393
BseLI	CCNNNNNNNGG	1 cut(s)	442
BseNI	ACTGG	2 cut(s)	537, 736
BseRI	GAGGAG	1 cut(s)	168
BseSI	GKGCMC	1 cut(s)	494
BseXI	GCAGC	1 cut(s)	111
BsgI	GTGCAG	1 cut(s)	569
Bsh1236I	CGCG	1 cut(s)	12
BshFI	GGCC	1 cut(s)	297
BshTI	ACCGGT	1 cut(s)	214
BsiHKAI	GWGCWC	2 cut(s)	494, 731
BsiSI	CCGG	3 cut(s)	215, 596, 641
BslFI	GGGAC	1 cut(s)	587
BslI	CCNNNNNNNGG	1 cut(s)	442
BsmAI	GTCTC	1 cut(s)	469
BsmFI	GGGAC	1 cut(s)	587
BsmI	GAATGC	1 cut(s)	77
BsnI	GGCC	1 cut(s)	297
Bsp1286I	GDGCHC	4 cut(s)	319, 494, 533, 731
Bsp143I	GATC	4 cut(s)	279, 406, 712, 767
Bsp19I	CCATGG	1 cut(s)	311
BspACI	CCGC	4 cut(s)	48, 224, 326, 605
BspANI	GGCC	1 cut(s)	297
BspFNI	CGCG	1 cut(s)	12
BspLI	GGNNCC	1 cut(s)	318
BspMAI	CTGCAG	1 cut(s)	748
BspPI	GGATC	3 cut(s)	414, 720, 775
BsrFI	RCCGGY	1 cut(s)	214
BsrI	ACTGG	2 cut(s)	537, 736
BssAI	RCCGGY	1 cut(s)	214
BssECI	CCNNGG	3 cut(s)	292, 311, 436
BssMI	GATC	4 cut(s)	279, 406, 712, 767
BssNI	GRCGYC	1 cut(s)	15
BssT1I	CCWWGG	2 cut(s)	292, 311
Bst2UI	CCWGG	2 cut(s)	87, 437
Bst4CI	ACNGT	5 cut(s)	197, 304, 504, 616, 686
BstACI	GRCGYC	1 cut(s)	15
BstDEI	CTNAG	1 cut(s)	650
BstDSI	CCRYGG	1 cut(s)	311
BstF5I	GGATG	2 cut(s)	436, 446
BstFNI	CGCG	1 cut(s)	12
BstKTI	GATC	4 cut(s)	282, 409, 715, 770
BstMAI	GTCTC	1 cut(s)	469
BstMBI	GATC	4 cut(s)	279, 406, 712, 767
BstMWI	GCNNNNNNNGC	1 cut(s)	637
BstNI	CCWGG	2 cut(s)	87, 437
BstSCI	CCNGG	2 cut(s)	85, 435
BstSFI	CTRYAG	1 cut(s)	744
BstSLI	GKGCMC	1 cut(s)	494
BstUI	CGCG	1 cut(s)	12
BstV1I	GCAGC	1 cut(s)	111
BstX2I	RGATCY	2 cut(s)	712, 767
BstYI	RGATCY	2 cut(s)	712, 767
BsuRI	GGCC	1 cut(s)	297
BtgI	CCRYGG	1 cut(s)	311
BtsCI	GGATG	2 cut(s)	436, 446
BtsI	GCAGTG	2 cut(s)	239, 741
BtsIMutI	CAGTG	5 cut(s)	239, 391, 544, 729, 741
Cfr10I	RCCGGY	1 cut(s)	214
Csp6I	GTAC	1 cut(s)	198
CspAI	ACCGGT	1 cut(s)	214
CviAII	CATG	4 cut(s)	204, 312, 602, 737
CviJI	RGCY	7 cut(s)	58, 102, 297, 317, 531, 568, 640
CviKI_1	RGCY	7 cut(s)	58, 102, 297, 317, 531, 568, 640
CviQI	GTAC	1 cut(s)	198
DdeI	CTNAG	1 cut(s)	650
DpnI	GATC	4 cut(s)	281, 408, 714, 769
DpnII	GATC	4 cut(s)	279, 406, 712, 767
EciI	GGCGGA	1 cut(s)	37
Eco130I	CCWWGG	2 cut(s)	292, 311
Eco147I	AGGCCT	1 cut(s)	297
Eco24I	GRGCYC	2 cut(s)	319, 533
Eco32I	GATATC	1 cut(s)	453
EcoRII	CCWGG	2 cut(s)	85, 435
EcoRV	GATATC	1 cut(s)	453
EcoT14I	CCWWGG	2 cut(s)	292, 311
EcoT38I	GRGCYC	2 cut(s)	319, 533
ErhI	CCWWGG	2 cut(s)	292, 311
FaeI	CATG	4 cut(s)	207, 315, 605, 740
FaqI	GGGAC	1 cut(s)	587
FatI	CATG	4 cut(s)	203, 311, 601, 736
FbaI	TGATCA	1 cut(s)	279
Fnu4HI	GCNGC	1 cut(s)	100
FokI	GGATG	2 cut(s)	443, 453
FriOI	GRGCYC	2 cut(s)	319, 533
Fsp4HI	GCNGC	1 cut(s)	100
GluI	GCNGC	1 cut(s)	100
HaeIII	GGCC	1 cut(s)	297
HapII	CCGG	3 cut(s)	215, 596, 641
Hin1I	GRCGYC	1 cut(s)	15
Hin1II	CATG	4 cut(s)	207, 315, 605, 740
HincII	GTYRAC	1 cut(s)	682
HindII	GTYRAC	1 cut(s)	682
HinfI	GANTC	4 cut(s)	477, 515, 592, 608
HpaII	CCGG	3 cut(s)	215, 596, 641
HphI	GGTGA	2 cut(s)	120, 185
Hpy166II	GTNNAC	4 cut(s)	128, 492, 682, 780
Hpy188I	TCNGA	1 cut(s)	694
Hpy188III	TCNNGA	5 cut(s)	19, 283, 481, 668, 758
Hpy8I	GTNNAC	4 cut(s)	128, 492, 682, 780
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	2 cut(s)	276, 397
HpyCH4III	ACNGT	5 cut(s)	197, 304, 504, 616, 686
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	4 cut(s)	232, 492, 550, 746
HpyF10VI	GCNNNNNNNGC	1 cut(s)	637
HpyF3I	CTNAG	1 cut(s)	650
HpySE526I	ACGT	1 cut(s)	15
Hsp92I	GRCGYC	1 cut(s)	15
Hsp92II	CATG	4 cut(s)	207, 315, 605, 740
Ksp22I	TGATCA	1 cut(s)	279
Kzo9I	GATC	4 cut(s)	279, 406, 712, 767
LmnI	GCTCC	2 cut(s)	322, 643
Lsp1109I	GCAGC	1 cut(s)	111
LweI	GCATC	1 cut(s)	58
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	2 cut(s)	554, 616
MalI	GATC	4 cut(s)	281, 408, 714, 769
MboI	GATC	4 cut(s)	279, 406, 712, 767
MboII	GAAGA	1 cut(s)	681
MfeI	CAATTG	1 cut(s)	577
MflI	RGATCY	2 cut(s)	712, 767
MhlI	GDGCHC	4 cut(s)	319, 494, 533, 731
MluCI	AATT	4 cut(s)	467, 577, 675, 790
MlyI	GAGTC	2 cut(s)	471, 602
MnlI	CCTC	6 cut(s)	35, 141, 150, 186, 189, 258
MroXI	GAANNNNTTC	2 cut(s)	77, 703
MseI	TTAA	2 cut(s)	306, 471
MspI	CCGG	3 cut(s)	215, 596, 641
MspR9I	CCNGG	2 cut(s)	87, 437
MunI	CAATTG	1 cut(s)	577
Mva1269I	GAATGC	1 cut(s)	77
MvaI	CCWGG	2 cut(s)	87, 437
MvnI	CGCG	1 cut(s)	12
MwoI	GCNNNNNNNGC	1 cut(s)	637
NcoI	CCATGG	1 cut(s)	311
NdeII	GATC	4 cut(s)	279, 406, 712, 767
NlaIII	CATG	4 cut(s)	207, 315, 605, 740
NlaIV	GGNNCC	1 cut(s)	318
PceI	AGGCCT	1 cut(s)	297
PctI	GAATGC	1 cut(s)	77
PdmI	GAANNNNTTC	2 cut(s)	77, 703
PfeI	GAWTC	2 cut(s)	515, 592
PfoI	TCCNGGA	1 cut(s)	85
PinAI	ACCGGT	1 cut(s)	214
PkrI	GCNGC	1 cut(s)	101
PleI	GAGTC	2 cut(s)	471, 602
PpsI	GAGTC	2 cut(s)	471, 602
Psp6I	CCWGG	2 cut(s)	85, 435
PspGI	CCWGG	2 cut(s)	85, 435
PspN4I	GGNNCC	1 cut(s)	318
PstI	CTGCAG	1 cut(s)	748
PsuI	RGATCY	2 cut(s)	712, 767
RsaI	GTAC	1 cut(s)	199
RsaNI	GTAC	1 cut(s)	198
SaqAI	TTAA	2 cut(s)	306, 471
SatI	GCNGC	1 cut(s)	100
Sau3AI	GATC	4 cut(s)	279, 406, 712, 767
SchI	GAGTC	2 cut(s)	471, 602
ScrFI	CCNGG	2 cut(s)	87, 437
SduI	GDGCHC	4 cut(s)	319, 494, 533, 731
SetI	ASST	5 cut(s)	18, 60, 133, 417, 656
SfaNI	GCATC	1 cut(s)	58
SfcI	CTRYAG	1 cut(s)	744
SmlI	CTYRAG	1 cut(s)	479
SmoI	CTYRAG	1 cut(s)	479
Sse9I	AATT	4 cut(s)	467, 577, 675, 790
SseBI	AGGCCT	1 cut(s)	297
SsiI	CCGC	4 cut(s)	48, 224, 326, 605
SspI	AATATT	1 cut(s)	704
StuI	AGGCCT	1 cut(s)	297
StyD4I	CCNGG	2 cut(s)	85, 435
StyI	CCWWGG	2 cut(s)	292, 311
TaaI	ACNGT	5 cut(s)	197, 304, 504, 616, 686
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	4 cut(s)	422, 449, 533, 725
TasI	AATT	4 cut(s)	467, 577, 675, 790
TfiI	GAWTC	2 cut(s)	515, 592
Tru1I	TTAA	2 cut(s)	306, 471
Tru9I	TTAA	2 cut(s)	306, 471
TscAI	CASTG	5 cut(s)	239, 391, 544, 736, 748
TseI	GCWGC	1 cut(s)	99
TspDTI	ATGAA	2 cut(s)	50, 590
TspGWI	ACGGA	2 cut(s)	240, 725
TspRI	CASTG	5 cut(s)	239, 391, 544, 736, 748
VneI	GTGCAC	1 cut(s)	490
XapI	RAATTY	1 cut(s)	467
XmnI	GAANNNNTTC	2 cut(s)	77, 703
ZraI	GACGTC	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.