Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0010535

Physical Location & Seq

Genomic Coordinates Reverse (-)

2226278 .. 2227201

Gene Structure 924 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG031700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGATGATGATGCATCAGCAAGTTGGTAACAGACGCGGTGCAAACTCATATGCACCTTCTTTTCTTCCTATGCTACATTATCAACCTCAGGTTCTTCCTCTTTCTGGGTATAACTACCAGCCACATCTTGGATATTCACCTTTTGTGCACCAAACTACGCCTCAACCGCCATACTATGCTACCACATTTTATAATCCTGTAGAACCAGATTACTTTGGCGCTTTCGGAACTTGGCCTTCTGTTGAACCTCAGTTTTCTTGTCATGCTCCGAGCATTATGCCAAATATGGGATCTCATTCTTTGAATTCAAGGGATGCAGTAGCCTCATTAAGGGGTGATATTATGAAGCAGATAGAGTACTATTTTAGTGATGAAAATTTGAATAAGCCTGACCGTTACCTGATTTCGTTGATGGATGACAAAGGGTGGGTTCCAGTACCTATCATTGCCGGGTTTCATAGGGTTAAAGCAATGTGTAAATCTGTAACCTTCATTCTTGAGTCGCTGTTAGACTCGAGTATAGTAGAAGTCCGAGGTAACAGGATAAGAAGACGTGATGTGTGGTCAAAGTGGATTTCATCAGCTAAGCTAGCTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000932 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005844 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010286 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0071704 GO:0090304 GO:1901360 GO:1901361 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

199

Amino Acids

22.74

Weight (kDa)

8.83

Isoelectric Point (pI)

58.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
La	PF05383	114 - 169	5.8e-19	La domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010535)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02470 FvH4_4g29920 FvH4_4g29960
malus_domestica	MD11G1176000.v1.1
prunus_persica	Prupe.3G218300_v2.0.a1
pyrus_communis	pycom17g09190
rosa_laevigata	RLG00000006380 RLG00000031169
rosa_multiflora	Rmu_sc0002682.1_g000003
rosa_roxburghii	Rroxscaffold_5G00379320
rosa_rugosa	Rorug04G0406200
rosa_samantha	Rh4BG370000 Rh4CG384100 Rh4DG364900 Rh5AG033300 Rh5BG031700 Rh5CG036000 Rh5DG032300
rosa_wichuraiana	Rw0G006370 Rw0G016310 Rw5G003070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	192
AccB7I	CCANNNNNTGG	1 cut(s)	128
AccII	CGCG	1 cut(s)	36
AciI	CCGC	2 cut(s)	36, 167
AclWI	GGATC	1 cut(s)	298
AcsI	RAATTY	2 cut(s)	304, 376
AfaI	GTAC	2 cut(s)	359, 438
AfiI	CCNNNNNNNGG	4 cut(s)	104, 128, 287, 330
AgsI	TTSAA	4 cut(s)	245, 304, 309, 382
AjiI	CACGTC	1 cut(s)	554
AluBI	AGCT	3 cut(s)	584, 589, 593
AluI	AGCT	3 cut(s)	584, 589, 593
Alw21I	GWGCWC	1 cut(s)	150
Alw44I	GTGCAC	1 cut(s)	146
AlwI	GGATC	1 cut(s)	298
Ama87I	CYCGRG	1 cut(s)	514
AoxI	GGCC	1 cut(s)	233
ApaLI	GTGCAC	1 cut(s)	146
ApoI	RAATTY	2 cut(s)	304, 376
AspLEI	GCGC	1 cut(s)	221
AsuC2I	CCSGG	1 cut(s)	451
AsuHPI	GGTGA	2 cut(s)	129, 347
AsuNHI	GCTAGC	1 cut(s)	589
AvaI	CYCGRG	1 cut(s)	514
AxyI	CCTNAGG	1 cut(s)	87
BaeGI	GKGCMC	1 cut(s)	150
BbsI	GAAGAC	1 cut(s)	556
Bbv12I	GWGCWC	1 cut(s)	150
BccI	CCATC	1 cut(s)	406
BcgI	CGANNNNNNTGC	2 cut(s)	259, 293
BcnI	CCSGG	1 cut(s)	451
BfaI	CTAG	1 cut(s)	590
BfmI	CTRYAG	1 cut(s)	198
BfoI	RGCGCY	1 cut(s)	222
BlpI	GCTNAGC	1 cut(s)	585
BmcAI	AGTACT	1 cut(s)	359
Bme1390I	CCNGG	1 cut(s)	451
BmeT110I	CYCGRG	1 cut(s)	514
BmgBI	CACGTC	1 cut(s)	554
BmiI	GGNNCC	1 cut(s)	432
BmrFI	CCNGG	1 cut(s)	451
BmsI	GCATC	2 cut(s)	22, 304
BmtI	GCTAGC	1 cut(s)	593
BpiI	GAAGAC	1 cut(s)	556
Bpu1102I	GCTNAGC	1 cut(s)	585
BpuEI	CTTGAG	1 cut(s)	518
BpuMI	CCSGG	1 cut(s)	451
BsaJI	CCNNGG	1 cut(s)	532
Bsc4I	CCNNNNNNNGG	4 cut(s)	104, 128, 287, 330
Bse1I	ACTGG	1 cut(s)	434
Bse21I	CCTNAGG	1 cut(s)	87
Bse3DI	GCAATG	2 cut(s)	444, 477
BseDI	CCNNGG	1 cut(s)	532
BseGI	GGATG	2 cut(s)	319, 421
BseLI	CCNNNNNNNGG	4 cut(s)	104, 128, 287, 330
BseMI	GCAATG	2 cut(s)	444, 477
BseMII	CTCAG	2 cut(s)	101, 263
BseNI	ACTGG	1 cut(s)	434
BseSI	GKGCMC	1 cut(s)	150
Bsh1236I	CGCG	1 cut(s)	36
BshFI	GGCC	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	150
BsiHKCI	CYCGRG	1 cut(s)	514
BsiSI	CCGG	1 cut(s)	450
BslI	CCNNNNNNNGG	4 cut(s)	104, 128, 287, 330
BsnI	GGCC	1 cut(s)	235
BsoBI	CYCGRG	1 cut(s)	514
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp143I	GATC	1 cut(s)	290
Bsp1720I	GCTNAGC	1 cut(s)	585
BspACI	CCGC	2 cut(s)	36, 167
BspANI	GGCC	1 cut(s)	235
BspCNI	CTCAG	2 cut(s)	100, 262
BspFNI	CGCG	1 cut(s)	36
BspLI	GGNNCC	1 cut(s)	432
BspOI	GCTAGC	1 cut(s)	593
BspPI	GGATC	1 cut(s)	298
BsrDI	GCAATG	2 cut(s)	444, 477
BsrI	ACTGG	1 cut(s)	434
BssECI	CCNNGG	1 cut(s)	532
BssMI	GATC	1 cut(s)	290
Bst4CI	ACNGT	1 cut(s)	395
BstC8I	GCNNGC	1 cut(s)	591
BstDEI	CTNAG	3 cut(s)	87, 249, 585
BstENI	CCTNNNNNAGG	1 cut(s)	328
BstF5I	GGATG	2 cut(s)	319, 421
BstFNI	CGCG	1 cut(s)	36
BstH2I	RGCGCY	1 cut(s)	222
BstHHI	GCGC	1 cut(s)	221
BstKTI	GATC	1 cut(s)	293
BstMBI	GATC	1 cut(s)	290
BstMWI	GCNNNNNNNGC	2 cut(s)	166, 590
BstSCI	CCNGG	1 cut(s)	449
BstSFI	CTRYAG	1 cut(s)	198
BstSLI	GKGCMC	1 cut(s)	150
BstUI	CGCG	1 cut(s)	36
BstV2I	GAAGAC	1 cut(s)	556
BstX2I	RGATCY	1 cut(s)	290
BstYI	RGATCY	1 cut(s)	290
Bsu36I	CCTNAGG	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	235
BtrI	CACGTC	1 cut(s)	554
BtsCI	GGATG	2 cut(s)	319, 421
Cac8I	GCNNGC	1 cut(s)	591
CfoI	GCGC	1 cut(s)	221
CseI	GACGC	1 cut(s)	42
Csp6I	GTAC	2 cut(s)	358, 437
CviAII	CATG	2 cut(s)	263, 597
CviJI	RGCY	7 cut(s)	121, 235, 323, 388, 584, 589, 593
CviKI_1	RGCY	7 cut(s)	121, 235, 323, 388, 584, 589, 593
CviQI	GTAC	2 cut(s)	358, 437
DdeI	CTNAG	3 cut(s)	87, 249, 585
DpnI	GATC	1 cut(s)	292
DpnII	GATC	1 cut(s)	290
Eco81I	CCTNAGG	1 cut(s)	87
Eco88I	CYCGRG	1 cut(s)	514
EcoNI	CCTNNNNNAGG	1 cut(s)	328
EcoRI	GAATTC	1 cut(s)	304
EcoT22I	ATGCAT	1 cut(s)	15
FaeI	CATG	2 cut(s)	266, 600
FatI	CATG	2 cut(s)	262, 596
FauNDI	CATATG	1 cut(s)	49
FokI	GGATG	2 cut(s)	326, 428
FspBI	CTAG	1 cut(s)	590
GlaI	GCGC	1 cut(s)	220
HaeII	RGCGCY	1 cut(s)	222
HaeIII	GGCC	1 cut(s)	235
HapII	CCGG	1 cut(s)	450
HgaI	GACGC	1 cut(s)	42
HhaI	GCGC	1 cut(s)	221
Hin1II	CATG	2 cut(s)	266, 600
Hin6I	GCGC	1 cut(s)	219
HinP1I	GCGC	1 cut(s)	219
HinfI	GANTC	2 cut(s)	500, 512
HpaII	CCGG	1 cut(s)	450
HphI	GGTGA	2 cut(s)	129, 347
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	3 cut(s)	227, 270, 533
Hpy188III	TCNNGA	1 cut(s)	497
Hpy8I	GTNNAC	1 cut(s)	148
HpyAV	CCTTC	3 cut(s)	66, 246, 499
HpyCH4III	ACNGT	1 cut(s)	395
HpyCH4IV	ACGT	1 cut(s)	553
HpyCH4V	TGCA	5 cut(s)	13, 41, 53, 148, 317
HpyF10VI	GCNNNNNNNGC	2 cut(s)	166, 590
HpyF3I	CTNAG	3 cut(s)	87, 249, 585
HpySE526I	ACGT	1 cut(s)	553
Hsp92II	CATG	2 cut(s)	266, 600
HspAI	GCGC	1 cut(s)	219
Kzo9I	GATC	1 cut(s)	290
LmnI	GCTCC	1 cut(s)	271
LweI	GCATC	2 cut(s)	22, 304
MaeI	CTAG	1 cut(s)	590
MaeII	ACGT	1 cut(s)	553
MaeIII	GTNAC	4 cut(s)	26, 395, 484, 536
MalI	GATC	1 cut(s)	292
MboI	GATC	1 cut(s)	290
MboII	GAAGA	3 cut(s)	56, 86, 561
MflI	RGATCY	1 cut(s)	290
MhlI	GDGCHC	1 cut(s)	150
MluCI	AATT	2 cut(s)	304, 376
MlyI	GAGTC	2 cut(s)	506, 509
MnlI	CCTC	6 cut(s)	96, 108, 171, 258, 334, 527
Mph1103I	ATGCAT	1 cut(s)	15
MseI	TTAA	2 cut(s)	329, 465
MspI	CCGG	1 cut(s)	450
MspR9I	CCNGG	1 cut(s)	451
MvnI	CGCG	1 cut(s)	36
MwoI	GCNNNNNNNGC	2 cut(s)	166, 590
NciI	CCSGG	1 cut(s)	451
NdeI	CATATG	1 cut(s)	49
NdeII	GATC	1 cut(s)	290
NheI	GCTAGC	1 cut(s)	589
NlaIII	CATG	2 cut(s)	266, 600
NlaIV	GGNNCC	1 cut(s)	432
NsiI	ATGCAT	1 cut(s)	15
PaeR7I	CTCGAG	1 cut(s)	514
PflMI	CCANNNNNTGG	1 cut(s)	128
PleI	GAGTC	2 cut(s)	506, 508
PpsI	GAGTC	2 cut(s)	506, 508
PsiI	TTATAA	1 cut(s)	192
PspN4I	GGNNCC	1 cut(s)	432
PspXI	VCTCGAGB	1 cut(s)	514
PsuI	RGATCY	1 cut(s)	290
RsaI	GTAC	2 cut(s)	359, 438
RsaNI	GTAC	2 cut(s)	358, 437
SaqAI	TTAA	2 cut(s)	329, 465
Sau3AI	GATC	1 cut(s)	290
ScaI	AGTACT	1 cut(s)	359
SchI	GAGTC	2 cut(s)	506, 509
ScrFI	CCNGG	1 cut(s)	451
SduI	GDGCHC	1 cut(s)	150
SfaNI	GCATC	2 cut(s)	22, 304
SfcI	CTRYAG	1 cut(s)	198
Sfr274I	CTCGAG	1 cut(s)	514
SlaI	CTCGAG	1 cut(s)	514
SmlI	CTYRAG	2 cut(s)	497, 514
SmoI	CTYRAG	2 cut(s)	497, 514
Sse9I	AATT	2 cut(s)	304, 376
SsiI	CCGC	2 cut(s)	36, 167
SspMI	CTAG	1 cut(s)	590
StyD4I	CCNGG	1 cut(s)	449
TaaI	ACNGT	1 cut(s)	395
TaiI	ACGT	1 cut(s)	556
TaqI	TCGA	1 cut(s)	515
TasI	AATT	2 cut(s)	304, 376
TatI	WGTACW	1 cut(s)	357
Tru1I	TTAA	2 cut(s)	329, 465
Tru9I	TTAA	2 cut(s)	329, 465
TspDTI	ATGAA	5 cut(s)	359, 387, 446, 481, 567
Van91I	CCANNNNNTGG	1 cut(s)	128
VneI	GTGCAC	1 cut(s)	146
XagI	CCTNNNNNAGG	1 cut(s)	328
XapI	RAATTY	2 cut(s)	304, 376
XcmI	CCANNNNNNNNNTGG	1 cut(s)	125
XhoI	CTCGAG	1 cut(s)	514
XspI	CTAG	1 cut(s)	590
ZrmI	AGTACT	1 cut(s)	359
Zsp2I	ATGCAT	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.