Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002682.1

Orthogroup ID

OG0010535

Physical Location & Seq

Genomic Coordinates Reverse (-)

10799 .. 11479

Gene Structure 681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002682.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

atgatgacaatgcatcagcagcatgtagctggtaaggaccataggtcaagaagtctcaatcctgctgccaagccctttttgtctctacatgaaaaccaacaacctattccttcttcactacaacccttcaaaccaggcatacaagatgttgcagcaccgccttttcaacctatgctacaccagcctcacgttcttcctgtttatggatatcataaccaggcatgcagcattagaggatacatgaatccagttcaaggttttgtgcacccaaatcagcctcaacctcgatattacgctggcaatttctttaatcctatttttggatctgtgccgctcgttacacctcagttttttggtcatgatccatgttaccaattaggtcagccaagtatgggatctcattctttgaatccaggggttccatcagcatcgttgagggataaaattgtgaagcaaatagaatactatttcagtgatgagaatctgccacatgaccattatctaatttcgttgatggatgaccaagggtgggttccaatatcaactgttgccaagtttagaagggttgagagaatgtgtgcggatataccatttattcttgactcattgttgtttggttcaagtgttgtagaagtgcagggtaacaagttaagaggacttcgtgatgagtggtcaaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000932 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005844 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010286 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0071704 GO:0090304 GO:1901360 GO:1901361 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

226

Amino Acids

25.54

Weight (kDa)

7.21

Isoelectric Point (pI)

53.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010535)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02470 FvH4_4g29920 FvH4_4g29960
malus_domestica	MD11G1176000.v1.1
prunus_persica	Prupe.3G218300_v2.0.a1
pyrus_communis	pycom17g09190
rosa_laevigata	RLG00000006380 RLG00000031169
rosa_multiflora	Rmu_sc0002682.1_g000003
rosa_roxburghii	Rroxscaffold_5G00379320
rosa_rugosa	Rorug04G0406200
rosa_samantha	Rh4BG370000 Rh4CG384100 Rh4DG364900 Rh5AG033300 Rh5BG031700 Rh5CG036000 Rh5DG032300
rosa_wichuraiana	Rw0G006370 Rw0G016310 Rw5G003070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	334
AciI	CCGC	3 cut(s)	158, 332, 581
AclWI	GGATC	3 cut(s)	331, 356, 403
AfiI	CCNNNNNNNGG	5 cut(s)	203, 254, 320, 392, 529
AgsI	TTSAA	5 cut(s)	130, 167, 254, 409, 621
AhdI	GACNNNNNGTC	1 cut(s)	43
AjnI	CCWGG	3 cut(s)	133, 216, 412
AjuI	GAANNNNNNNTTGG	4 cut(s)	90, 122, 516, 548
AluBI	AGCT	1 cut(s)	29
AluI	AGCT	1 cut(s)	29
Alw21I	GWGCWC	1 cut(s)	267
Alw26I	GTCTC	2 cut(s)	59, 87
Alw44I	GTGCAC	1 cut(s)	263
AlwI	GGATC	3 cut(s)	331, 356, 403
ApaLI	GTGCAC	1 cut(s)	263
ApeKI	GCWGC	4 cut(s)	19, 65, 152, 225
AspS9I	GGNCC	1 cut(s)	37
AvaII	GGWCC	1 cut(s)	37
BaeGI	GKGCMC	1 cut(s)	267
Bbv12I	GWGCWC	1 cut(s)	267
BbvI	GCAGC	4 cut(s)	31, 52, 164, 237
BccI	CCATC	2 cut(s)	430, 508
BciT130I	CCWGG	3 cut(s)	135, 218, 414
BciVI	GTATCC	1 cut(s)	230
BcoDI	GTCTC	2 cut(s)	59, 87
BfuI	GTATCC	1 cut(s)	230
BisI	GCNGC	5 cut(s)	20, 66, 153, 226, 332
BlsI	GCNGC	5 cut(s)	21, 67, 154, 227, 333
Bme1390I	CCNGG	3 cut(s)	135, 218, 414
Bme18I	GGWCC	1 cut(s)	37
BmeRI	GACNNNNNGTC	1 cut(s)	43
BmgT120I	GGNCC	1 cut(s)	37
BmiI	GGNNCC	2 cut(s)	420, 534
BmrFI	CCNGG	3 cut(s)	135, 218, 414
BmsI	GCATC	2 cut(s)	22, 437
BsaBI	GATNNNNATC	1 cut(s)	480
BsaJI	CCNNGG	2 cut(s)	413, 523
Bsc4I	CCNNNNNNNGG	5 cut(s)	203, 254, 320, 392, 529
Bse1I	ACTGG	1 cut(s)	248
Bse8I	GATNNNNATC	1 cut(s)	480
BseBI	CCWGG	3 cut(s)	135, 218, 414
BseDI	CCNNGG	2 cut(s)	413, 523
BseGI	GGATG	1 cut(s)	523
BseJI	GATNNNNATC	1 cut(s)	480
BseLI	CCNNNNNNNGG	5 cut(s)	203, 254, 320, 392, 529
BseMII	CTCAG	1 cut(s)	359
BseNI	ACTGG	1 cut(s)	248
BseSI	GKGCMC	1 cut(s)	267
BseXI	GCAGC	4 cut(s)	31, 52, 164, 237
BsgI	GTGCAG	1 cut(s)	656
BsiHKAI	GWGCWC	1 cut(s)	267
BslI	CCNNNNNNNGG	5 cut(s)	203, 254, 320, 392, 529
BsmAI	GTCTC	2 cut(s)	59, 87
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp143I	GATC	3 cut(s)	323, 361, 395
BspACI	CCGC	3 cut(s)	158, 332, 581
BspCNI	CTCAG	1 cut(s)	358
BspHI	TCATGA	1 cut(s)	358
BspLI	GGNNCC	2 cut(s)	420, 534
BspPI	GGATC	3 cut(s)	331, 356, 403
BsrBI	CCGCTC	1 cut(s)	334
BsrI	ACTGG	1 cut(s)	248
BssECI	CCNNGG	2 cut(s)	413, 523
BssMI	GATC	3 cut(s)	323, 361, 395
BssT1I	CCWWGG	1 cut(s)	523
Bst2UI	CCWGG	3 cut(s)	135, 218, 414
Bst4CI	ACNGT	1 cut(s)	547
BstC8I	GCNNGC	2 cut(s)	223, 298
BstDEI	CTNAG	1 cut(s)	345
BstF5I	GGATG	1 cut(s)	523
BstKTI	GATC	3 cut(s)	326, 364, 398
BstMAI	GTCTC	2 cut(s)	59, 87
BstMBI	GATC	3 cut(s)	323, 361, 395
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 181
BstNI	CCWGG	3 cut(s)	135, 218, 414
BstNSI	RCATGY	2 cut(s)	26, 225
BstSCI	CCNGG	3 cut(s)	133, 216, 412
BstSLI	GKGCMC	1 cut(s)	267
BstV1I	GCAGC	4 cut(s)	31, 52, 164, 237
BstX2I	RGATCY	2 cut(s)	323, 395
BstYI	RGATCY	2 cut(s)	323, 395
BsuI	GTATCC	1 cut(s)	230
BtsCI	GGATG	1 cut(s)	523
BtsIMutI	CAGTG	1 cut(s)	478
Cac8I	GCNNGC	2 cut(s)	223, 298
CciI	TCATGA	1 cut(s)	358
Cfr13I	GGNCC	1 cut(s)	37
CviAII	CATG	7 cut(s)	23, 89, 222, 241, 359, 366, 491
CviJI	RGCY	5 cut(s)	29, 73, 184, 277, 385
CviKI_1	RGCY	5 cut(s)	29, 73, 184, 277, 385
DdeI	CTNAG	1 cut(s)	345
DpnI	GATC	3 cut(s)	325, 363, 397
DpnII	GATC	3 cut(s)	323, 361, 395
DriI	GACNNNNNGTC	1 cut(s)	43
Eam1105I	GACNNNNNGTC	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	523
Eco32I	GATATC	1 cut(s)	209
Eco47I	GGWCC	1 cut(s)	37
EcoRII	CCWGG	3 cut(s)	133, 216, 412
EcoRV	GATATC	1 cut(s)	209
EcoT14I	CCWWGG	1 cut(s)	523
EcoT22I	ATGCAT	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	523
FaeI	CATG	7 cut(s)	26, 92, 225, 244, 362, 369, 494
FatI	CATG	7 cut(s)	22, 88, 221, 240, 358, 365, 490
Fnu4HI	GCNGC	5 cut(s)	20, 66, 153, 226, 332
FokI	GGATG	1 cut(s)	530
Fsp4HI	GCNGC	5 cut(s)	20, 66, 153, 226, 332
GluI	GCNGC	5 cut(s)	20, 66, 153, 226, 332
Hin1II	CATG	7 cut(s)	26, 92, 225, 244, 362, 369, 494
HinfI	GANTC	4 cut(s)	244, 409, 481, 602
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188III	TCNNGA	4 cut(s)	48, 359, 599, 662
Hpy8I	GTNNAC	1 cut(s)	265
HpyAV	CCTTC	3 cut(s)	120, 136, 555
HpyCH4III	ACNGT	1 cut(s)	547
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	5 cut(s)	13, 152, 225, 265, 637
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 181
HpyF3I	CTNAG	1 cut(s)	345
HpySE526I	ACGT	1 cut(s)	189
Hsp92II	CATG	7 cut(s)	26, 92, 225, 244, 362, 369, 494
Kzo9I	GATC	3 cut(s)	323, 361, 395
Lsp1109I	GCAGC	4 cut(s)	31, 52, 164, 237
LweI	GCATC	2 cut(s)	22, 437
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	3 cut(s)	337, 368, 641
MalI	GATC	3 cut(s)	325, 363, 397
MbiI	CCGCTC	1 cut(s)	334
MboI	GATC	3 cut(s)	323, 361, 395
MboII	GAAGA	2 cut(s)	105, 185
MflI	RGATCY	2 cut(s)	323, 395
MhlI	GDGCHC	1 cut(s)	267
MluCI	AATT	5 cut(s)	301, 374, 444, 504, 676
MlyI	GAGTC	1 cut(s)	596
MnlI	CCTC	7 cut(s)	195, 227, 288, 294, 354, 429, 647
Mph1103I	ATGCAT	1 cut(s)	15
MseI	TTAA	2 cut(s)	309, 650
MspR9I	CCNGG	3 cut(s)	135, 218, 414
MvaI	CCWGG	3 cut(s)	135, 218, 414
MwoI	GCNNNNNNNGC	2 cut(s)	19, 181
NdeII	GATC	3 cut(s)	323, 361, 395
NlaIII	CATG	7 cut(s)	26, 92, 225, 244, 362, 369, 494
NlaIV	GGNNCC	2 cut(s)	420, 534
NsiI	ATGCAT	1 cut(s)	15
NspI	RCATGY	2 cut(s)	26, 225
PaeI	GCATGC	1 cut(s)	225
PagI	TCATGA	1 cut(s)	358
PfeI	GAWTC	3 cut(s)	244, 409, 481
PkrI	GCNGC	5 cut(s)	21, 67, 154, 227, 333
PleI	GAGTC	1 cut(s)	596
PpsI	GAGTC	1 cut(s)	596
Psp6I	CCWGG	3 cut(s)	133, 216, 412
PspGI	CCWGG	3 cut(s)	133, 216, 412
PspN4I	GGNNCC	2 cut(s)	420, 534
PspPI	GGNCC	1 cut(s)	37
PsuI	RGATCY	2 cut(s)	323, 395
SaqAI	TTAA	2 cut(s)	309, 650
SatI	GCNGC	5 cut(s)	20, 66, 153, 226, 332
Sau3AI	GATC	3 cut(s)	323, 361, 395
Sau96I	GGNCC	1 cut(s)	37
SchI	GAGTC	1 cut(s)	596
ScrFI	CCNGG	3 cut(s)	135, 218, 414
SduI	GDGCHC	1 cut(s)	267
SetI	ASST	9 cut(s)	31, 47, 106, 172, 192, 259, 286, 346, 382
SfaNI	GCATC	2 cut(s)	22, 437
SinI	GGWCC	1 cut(s)	37
SphI	GCATGC	1 cut(s)	225
Sse9I	AATT	5 cut(s)	301, 374, 444, 504, 676
SsiI	CCGC	3 cut(s)	158, 332, 581
StyD4I	CCNGG	3 cut(s)	133, 216, 412
StyI	CCWWGG	1 cut(s)	523
TaaI	ACNGT	1 cut(s)	547
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	1 cut(s)	286
TasI	AATT	5 cut(s)	301, 374, 444, 504, 676
TauI	GCSGC	1 cut(s)	334
TfiI	GAWTC	3 cut(s)	244, 409, 481
Tru1I	TTAA	2 cut(s)	309, 650
Tru9I	TTAA	2 cut(s)	309, 650
TscAI	CASTG	1 cut(s)	478
TseI	GCWGC	4 cut(s)	19, 65, 152, 225
TspDTI	ATGAA	2 cut(s)	105, 257
TspRI	CASTG	1 cut(s)	478
VneI	GTGCAC	1 cut(s)	263
VpaK11BI	GGWCC	1 cut(s)	37
XceI	RCATGY	2 cut(s)	26, 225
Zsp2I	ATGCAT	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.