Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0010535

Physical Location & Seq

Genomic Coordinates Reverse (-)

20805034 .. 20806321

Gene Structure 1288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1176000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGTTGTTGAGGGACAATATTATAAAGCAAATAGAGTATTATTTCAGTGATGAAAATCTAAAGAAAGACCGTTACTTAATTTCATTGATGGATGACCAAGGATGGGTCCCAATAACCACCATTGCTGACTTTAAAAGGGTATGTTTTGGTATCATAGTAGATATTGCAGAAGCTAAGGTAATACATGCTGATCCAGTTTTTCTTTTGGTCAGCTGTGTGATCTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000932 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005844 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010286 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0071704 GO:0090304 GO:1901360 GO:1901361 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

76

Amino Acids

8.74

Weight (kDa)

4.83

Isoelectric Point (pI)

28.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
La	PF05383	7 - 47	5.5e-21	La domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010535)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02470 FvH4_4g29920 FvH4_4g29960
malus_domestica	MD11G1176000.v1.1
prunus_persica	Prupe.3G218300_v2.0.a1
pyrus_communis	pycom17g09190
rosa_laevigata	RLG00000006380 RLG00000031169
rosa_multiflora	Rmu_sc0002682.1_g000003
rosa_roxburghii	Rroxscaffold_5G00379320
rosa_rugosa	Rorug04G0406200
rosa_samantha	Rh4BG370000 Rh4CG384100 Rh4DG364900 Rh5AG033300 Rh5BG031700 Rh5CG036000 Rh5DG032300
rosa_wichuraiana	Rw0G006370 Rw0G016310 Rw5G003070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	23
AclWI	GGATC	1 cut(s)	185
AfiI	CCNNNNNNNGG	1 cut(s)	103
AluBI	AGCT	2 cut(s)	173, 213
AluI	AGCT	2 cut(s)	173, 213
AlwI	GGATC	1 cut(s)	185
AspS9I	GGNCC	1 cut(s)	106
AvaII	GGWCC	1 cut(s)	106
BccI	CCATC	2 cut(s)	82, 96
Bme18I	GGWCC	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	106
BmiI	GGNNCC	2 cut(s)	107, 108
Bpu10I	CCTNAGC	1 cut(s)	174
BsaBI	GATNNNNATC	1 cut(s)	54
BsaJI	CCNNGG	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
Bse1I	ACTGG	1 cut(s)	194
Bse3DI	GCAATG	1 cut(s)	120
Bse8I	GATNNNNATC	1 cut(s)	54
BseDI	CCNNGG	1 cut(s)	97
BseGI	GGATG	2 cut(s)	97, 107
BseJI	GATNNNNATC	1 cut(s)	54
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseMI	GCAATG	1 cut(s)	120
BseNI	ACTGG	1 cut(s)	194
BslFI	GGGAC	2 cut(s)	26, 92
BslI	CCNNNNNNNGG	1 cut(s)	103
BsmFI	GGGAC	2 cut(s)	26, 92
Bsp143I	GATC	2 cut(s)	190, 219
BspLI	GGNNCC	2 cut(s)	107, 108
BspPI	GGATC	1 cut(s)	185
BsrDI	GCAATG	1 cut(s)	120
BsrI	ACTGG	1 cut(s)	194
BssECI	CCNNGG	1 cut(s)	97
BssMI	GATC	2 cut(s)	190, 219
BssT1I	CCWWGG	1 cut(s)	97
Bst4CI	ACNGT	1 cut(s)	71
BstDEI	CTNAG	1 cut(s)	174
BstF5I	GGATG	2 cut(s)	97, 107
BstKTI	GATC	2 cut(s)	193, 222
BstMBI	GATC	2 cut(s)	190, 219
BstNSI	RCATGY	1 cut(s)	188
BtsCI	GGATG	2 cut(s)	97, 107
BtsIMutI	CAGTG	1 cut(s)	52
Cfr13I	GGNCC	1 cut(s)	106
CviAII	CATG	1 cut(s)	185
CviJI	RGCY	2 cut(s)	173, 213
CviKI_1	RGCY	2 cut(s)	173, 213
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	2 cut(s)	192, 221
DpnII	GATC	2 cut(s)	190, 219
DraI	TTTAAA	1 cut(s)	133
Eco130I	CCWWGG	1 cut(s)	97
Eco47I	GGWCC	1 cut(s)	106
EcoO109I	RGGNCCY	1 cut(s)	106
EcoT14I	CCWWGG	1 cut(s)	97
ErhI	CCWWGG	1 cut(s)	97
FaeI	CATG	1 cut(s)	188
FaiI	YATR	4 cut(s)	23, 142, 155, 186
FaqI	GGGAC	2 cut(s)	26, 92
FatI	CATG	1 cut(s)	184
FokI	GGATG	2 cut(s)	104, 114
Hin1II	CATG	1 cut(s)	188
HpyCH4III	ACNGT	1 cut(s)	71
HpyCH4V	TGCA	1 cut(s)	167
HpyF3I	CTNAG	1 cut(s)	174
Hsp92II	CATG	1 cut(s)	188
KflI	GGGWCCC	1 cut(s)	106
Kzo9I	GATC	2 cut(s)	190, 219
LpnPI	CCDG	1 cut(s)	207
MaeIII	GTNAC	1 cut(s)	71
MalI	GATC	2 cut(s)	192, 221
MboI	GATC	2 cut(s)	190, 219
MluCI	AATT	1 cut(s)	78
MnlI	CCTC	1 cut(s)	3
MseI	TTAA	2 cut(s)	77, 132
MspA1I	CMGCKG	1 cut(s)	213
NdeII	GATC	2 cut(s)	190, 219
NlaIII	CATG	1 cut(s)	188
NlaIV	GGNNCC	2 cut(s)	107, 108
NspI	RCATGY	1 cut(s)	188
PpuMI	RGGWCCY	1 cut(s)	106
PsiI	TTATAA	1 cut(s)	23
Psp5II	RGGWCCY	1 cut(s)	106
PspN4I	GGNNCC	2 cut(s)	107, 108
PspPI	GGNCC	1 cut(s)	106
PspPPI	RGGWCCY	1 cut(s)	106
PvuII	CAGCTG	1 cut(s)	213
SaqAI	TTAA	2 cut(s)	77, 132
Sau3AI	GATC	2 cut(s)	190, 219
Sau96I	GGNCC	1 cut(s)	106
SetI	ASST	3 cut(s)	175, 180, 215
SgeI	CNNG	3 cut(s)	110, 197, 206
SinI	GGWCC	1 cut(s)	106
Sse9I	AATT	1 cut(s)	78
SspI	AATATT	1 cut(s)	19
StyI	CCWWGG	1 cut(s)	97
TaaI	ACNGT	1 cut(s)	71
TasI	AATT	1 cut(s)	78
Tru1I	TTAA	2 cut(s)	77, 132
Tru9I	TTAA	2 cut(s)	77, 132
TscAI	CASTG	1 cut(s)	52
TspDTI	ATGAA	2 cut(s)	66, 72
TspRI	CASTG	1 cut(s)	52
VpaK11BI	GGWCC	1 cut(s)	106
XceI	RCATGY	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.