Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005180

Physical Location & Seq

Genomic Coordinates Reverse (-)

2692716 .. 2693360

Gene Structure 645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g04690.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGTCTATGAATCTGATTCCCCATTACTCAACCCCTTCAATCTGTTACTCATTCCCAAACAAAACCCTAATCTCCTCAGTCCAAAATCGTAGTACTAGAGCTACGCATAACAATGATCAAAACCTTGGCAACCACCAAGTTTCTGTTCTGAAATTCGACAGGAGAAATGTGCTTCTGGGTTTGGGAGGTTTAACTTTGGTGAATCATCCACACCTAGCACGCGCGGCCGAGTCGAAGAAGCTGGTTCGGCTCACTGAGTTCCCGACGGCTTTGGACTCGGTGATCAGTGTGATGGTGCCGAGGCCGAGGAGGTCGAGGAGCAAGAAGGAAAAGGAAGAGGAAGAGGAGGTGCTGTCGATCGAAGGCATTGAGTTCGTGGCCGATAAGGCTGTGAAGTTCGACGTGCATGTGAACGATGACGAGGACGATCTGAGTCGACCTAGCGAGTCTCAGTTTGCCGGAAGCTTGGTGTTTTTGCCGCAGAGCCGGAAGAGGGTGAGGACTAGTTTGCATTTGGGGATAACGGACTTGTTGGAGGATTTGGGAGCTGATGGTGATAGTAGTATTAAGGTGACCTTGGTGCCAAGGTATGTGCAACGACCTATCACCATTGGGAGGATCAAGATCGAGTATTTCAGTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00350 ko00950 ko01100 ko01110 map00350 map00950 map01100 map01110

Pfam Domains

Protein Families

PPO1_DWL PPO1_KFDV Tyrosinase

Protein Analysis

215

Amino Acids

24.02

Weight (kDa)

8.67

Isoelectric Point (pI)

60.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPO1_KFDV	PF12143	87 - 211	3e-44	Chloroplastic Polyphenol Oxidase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005180)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g04681 FvH4_3g04690
malus_domestica	MD10G1298200.v1.1
prunus_persica	Prupe.4G042000_v2.0.a1 Prupe.4G042100_v2.0.a1
pyrus_communis	pycom10g25130
rosa_chinensis	RchiOBHm_Chr5g0007721 RchiOBHm_Chr5g0007731
rosa_laevigata	RLG00000014973 RLG00000014974 RLG00000031481 RLG00000031482
rosa_multiflora	Rmu_sc0005098.1_g000022 Rmu_sc0005098.1_g000023
rosa_roxburghii	Rroxscaffold_1G00068680 Rroxscaffold_1G00068690
rosa_rugosa	Rorug04G0429700 Rorug04G0429800
rosa_samantha	Rh3AG210400 Rh5AG058100 Rh5AG058200 Rh5BG054700 Rh5BG054900 Rh5CG064600 Rh5CG064700 Rh5CG482400 Rh5DG053900 Rh5DG054000
rosa_wichuraiana	Rw5G006150 Rw5G006160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	295, 580
AccI	GTMKAC	1 cut(s)	436
AccII	CGCG	2 cut(s)	222, 224
AciI	CCGC	2 cut(s)	224, 479
AclWI	GGATC	1 cut(s)	626
AcoI	YGGCCR	2 cut(s)	225, 378
AcsI	RAATTY	1 cut(s)	152
AfaI	GTAC	1 cut(s)	94
AfiI	CCNNNNNNNGG	2 cut(s)	493, 615
AgsI	TTSAA	1 cut(s)	39
AhlI	ACTAGT	1 cut(s)	503
AjiI	CACGTC	1 cut(s)	403
AjuI	GAANNNNNNNTTGG	2 cut(s)	129, 161
AluBI	AGCT	4 cut(s)	101, 241, 465, 548
AluI	AGCT	4 cut(s)	101, 241, 465, 548
Alw26I	GTCTC	1 cut(s)	453
AlwI	GGATC	1 cut(s)	626
AoxI	GGCC	3 cut(s)	225, 302, 378
ApoI	RAATTY	1 cut(s)	152
AspLEI	GCGC	1 cut(s)	224
AsuHPI	GGTGA	6 cut(s)	211, 292, 508, 566, 583, 598
BanI	GGYRCC	2 cut(s)	295, 580
BccI	CCATC	2 cut(s)	286, 545
BceAI	ACGGC	1 cut(s)	282
BcgI	CGANNNNNNTGC	2 cut(s)	355, 389
BclI	TGATCA	2 cut(s)	115, 282
BcoDI	GTCTC	1 cut(s)	453
BcuI	ACTAGT	1 cut(s)	503
BfaI	CTAG	5 cut(s)	96, 215, 441, 504, 643
BglI	GCCNNNNNGGC	1 cut(s)	386
BisI	GCNGC	2 cut(s)	225, 479
BlsI	GCNGC	2 cut(s)	226, 480
BmcAI	AGTACT	1 cut(s)	94
BmgBI	CACGTC	1 cut(s)	403
BmiI	GGNNCC	2 cut(s)	297, 582
BsaBI	GATNNNNATC	1 cut(s)	623
BsaJI	CCNNGG	5 cut(s)	124, 299, 305, 576, 584
BsaXI	ACNNNNNCTCC	2 cut(s)	338, 368
Bsc4I	CCNNNNNNNGG	2 cut(s)	493, 615
Bse8I	GATNNNNATC	1 cut(s)	623
BseDI	CCNNGG	5 cut(s)	124, 299, 305, 576, 584
BseGI	GGATG	1 cut(s)	205
BseJI	GATNNNNATC	1 cut(s)	623
BseLI	CCNNNNNNNGG	2 cut(s)	493, 615
BseMII	CTCAG	4 cut(s)	90, 246, 422, 464
BseRI	GAGGAG	4 cut(s)	64, 322, 331, 359
BseX3I	CGGCCG	1 cut(s)	225
Bsh1236I	CGCG	2 cut(s)	222, 224
Bsh1285I	CGRYCG	2 cut(s)	228, 360
BshFI	GGCC	3 cut(s)	227, 304, 380
BshNI	GGYRCC	2 cut(s)	295, 580
BsiEI	CGRYCG	2 cut(s)	228, 360
BsiSI	CCGG	2 cut(s)	459, 487
BslI	CCNNNNNNNGG	2 cut(s)	493, 615
BsmAI	GTCTC	1 cut(s)	453
BsnI	GGCC	3 cut(s)	227, 304, 380
Bsp143I	GATC	6 cut(s)	115, 282, 357, 427, 618, 624
BspACI	CCGC	2 cut(s)	224, 479
BspANI	GGCC	3 cut(s)	227, 304, 380
BspCNI	CTCAG	4 cut(s)	89, 247, 423, 463
BspFNI	CGCG	2 cut(s)	222, 224
BspLI	GGNNCC	2 cut(s)	297, 582
BspPI	GGATC	1 cut(s)	626
BspT107I	GGYRCC	2 cut(s)	295, 580
BssECI	CCNNGG	5 cut(s)	124, 299, 305, 576, 584
BssMI	GATC	6 cut(s)	115, 282, 357, 427, 618, 624
BssT1I	CCWWGG	3 cut(s)	124, 576, 584
Bst6I	CTCTTC	3 cut(s)	330, 336, 485
BstC8I	GCNNGC	1 cut(s)	220
BstDEI	CTNAG	4 cut(s)	76, 255, 431, 450
BstEII	GGTNACC	1 cut(s)	571
BstF5I	GGATG	1 cut(s)	205
BstFNI	CGCG	2 cut(s)	222, 224
BstHHI	GCGC	1 cut(s)	224
BstKTI	GATC	6 cut(s)	118, 285, 360, 430, 621, 627
BstMAI	GTCTC	1 cut(s)	453
BstMBI	GATC	6 cut(s)	115, 282, 357, 427, 618, 624
BstMCI	CGRYCG	2 cut(s)	228, 360
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 247, 386
BstNSI	RCATGY	1 cut(s)	410
BstPI	GGTNACC	1 cut(s)	571
BstUI	CGCG	2 cut(s)	222, 224
BstZI	CGGCCG	1 cut(s)	225
BsuRI	GGCC	3 cut(s)	227, 304, 380
BtrI	CACGTC	1 cut(s)	403
BtsCI	GGATG	1 cut(s)	205
BtsIMutI	CAGTG	3 cut(s)	252, 292, 643
Cac8I	GCNNGC	1 cut(s)	220
CfoI	GCGC	1 cut(s)	224
Csp6I	GTAC	1 cut(s)	93
CviAII	CATG	1 cut(s)	407
CviQI	GTAC	1 cut(s)	93
DdeI	CTNAG	4 cut(s)	76, 255, 431, 450
DpnI	GATC	6 cut(s)	117, 284, 359, 429, 620, 626
DpnII	GATC	6 cut(s)	115, 282, 357, 427, 618, 624
EaeI	YGGCCR	2 cut(s)	225, 378
EagI	CGGCCG	1 cut(s)	225
Eam1104I	CTCTTC	3 cut(s)	330, 336, 485
EarI	CTCTTC	3 cut(s)	330, 336, 485
EclXI	CGGCCG	1 cut(s)	225
Eco130I	CCWWGG	3 cut(s)	124, 576, 584
Eco52I	CGGCCG	1 cut(s)	225
Eco91I	GGTNACC	1 cut(s)	571
EcoO65I	GGTNACC	1 cut(s)	571
EcoT14I	CCWWGG	3 cut(s)	124, 576, 584
ErhI	CCWWGG	3 cut(s)	124, 576, 584
FaeI	CATG	1 cut(s)	410
FaiI	YATR	4 cut(s)	8, 108, 408, 591
FalI	AAGNNNNNCTT	2 cut(s)	560, 592
FatI	CATG	1 cut(s)	406
FbaI	TGATCA	2 cut(s)	115, 282
FblI	GTMKAC	1 cut(s)	436
Fnu4HI	GCNGC	2 cut(s)	225, 479
FokI	GGATG	1 cut(s)	192
Fsp4HI	GCNGC	2 cut(s)	225, 479
FspBI	CTAG	5 cut(s)	96, 215, 441, 504, 643
GlaI	GCGC	1 cut(s)	223
GluI	GCNGC	2 cut(s)	225, 479
HaeIII	GGCC	3 cut(s)	227, 304, 380
HapII	CCGG	2 cut(s)	459, 487
HhaI	GCGC	1 cut(s)	224
Hin1II	CATG	1 cut(s)	410
Hin6I	GCGC	1 cut(s)	222
HinP1I	GCGC	1 cut(s)	222
HincII	GTYRAC	1 cut(s)	437
HindII	GTYRAC	1 cut(s)	437
HindIII	AAGCTT	1 cut(s)	463
HinfI	GANTC	7 cut(s)	10, 16, 202, 230, 275, 433, 446
HpaII	CCGG	2 cut(s)	459, 487
HphI	GGTGA	6 cut(s)	211, 292, 508, 566, 583, 598
Hpy166II	GTNNAC	2 cut(s)	412, 437
Hpy188I	TCNGA	3 cut(s)	15, 150, 432
Hpy188III	TCNNGA	2 cut(s)	262, 622
Hpy8I	GTNNAC	2 cut(s)	412, 437
Hpy99I	CGWCG	2 cut(s)	268, 404
HpyAV	CCTTC	3 cut(s)	45, 319, 356
HpyCH4IV	ACGT	1 cut(s)	402
HpyCH4V	TGCA	3 cut(s)	406, 511, 595
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 247, 386
HpyF3I	CTNAG	4 cut(s)	76, 255, 431, 450
HpySE526I	ACGT	1 cut(s)	402
Hsp92II	CATG	1 cut(s)	410
HspAI	GCGC	1 cut(s)	222
Ksp22I	TGATCA	2 cut(s)	115, 282
Kzo9I	GATC	6 cut(s)	115, 282, 357, 427, 618, 624
LmnI	GCTCC	2 cut(s)	318, 545
LpnPI	CCDG	5 cut(s)	145, 161, 227, 472, 500
MaeI	CTAG	5 cut(s)	96, 215, 441, 504, 643
MaeII	ACGT	1 cut(s)	402
MaeIII	GTNAC	2 cut(s)	44, 571
MalI	GATC	6 cut(s)	117, 284, 359, 429, 620, 626
MboI	GATC	6 cut(s)	115, 282, 357, 427, 618, 624
MboII	GAAGA	4 cut(s)	247, 347, 353, 502
MluCI	AATT	1 cut(s)	152
MlyI	GAGTC	4 cut(s)	239, 269, 442, 455
MmeI	TCCRAC	1 cut(s)	513
MseI	TTAA	2 cut(s)	191, 567
MslI	CAYNNNNRTG	1 cut(s)	111
MspI	CCGG	2 cut(s)	459, 487
MvnI	CGCG	2 cut(s)	222, 224
MwoI	GCNNNNNNNGC	3 cut(s)	224, 247, 386
NdeII	GATC	6 cut(s)	115, 282, 357, 427, 618, 624
NlaIII	CATG	1 cut(s)	410
NlaIV	GGNNCC	2 cut(s)	297, 582
NmeAIII	GCCGAG	3 cut(s)	253, 324, 330
NmuCI	GTSAC	1 cut(s)	571
NspI	RCATGY	1 cut(s)	410
PfeI	GAWTC	3 cut(s)	10, 16, 202
PkrI	GCNGC	2 cut(s)	226, 480
Ple19I	CGATCG	1 cut(s)	360
PleI	GAGTC	4 cut(s)	238, 269, 441, 454
PpsI	GAGTC	4 cut(s)	238, 269, 441, 454
PspEI	GGTNACC	1 cut(s)	571
PspN4I	GGNNCC	2 cut(s)	297, 582
PvuI	CGATCG	1 cut(s)	360
RsaI	GTAC	1 cut(s)	94
RsaNI	GTAC	1 cut(s)	93
RseI	CAYNNNNRTG	1 cut(s)	111
SalI	GTCGAC	1 cut(s)	435
SaqAI	TTAA	2 cut(s)	191, 567
SatI	GCNGC	2 cut(s)	225, 479
Sau3AI	GATC	6 cut(s)	115, 282, 357, 427, 618, 624
ScaI	AGTACT	1 cut(s)	94
SchI	GAGTC	4 cut(s)	239, 269, 442, 455
SmiMI	CAYNNNNRTG	1 cut(s)	111
SpeI	ACTAGT	1 cut(s)	503
Sse9I	AATT	1 cut(s)	152
SsiI	CCGC	2 cut(s)	224, 479
SspMI	CTAG	5 cut(s)	96, 215, 441, 504, 643
StyI	CCWWGG	3 cut(s)	124, 576, 584
TaiI	ACGT	1 cut(s)	405
TaqI	TCGA	8 cut(s)	156, 233, 314, 356, 360, 399, 436, 627
TasI	AATT	1 cut(s)	152
TatI	WGTACW	1 cut(s)	92
TauI	GCSGC	2 cut(s)	227, 481
TfiI	GAWTC	3 cut(s)	10, 16, 202
Tru1I	TTAA	2 cut(s)	191, 567
Tru9I	TTAA	2 cut(s)	191, 567
TscAI	CASTG	3 cut(s)	259, 292, 643
TseFI	GTSAC	1 cut(s)	571
Tsp45I	GTSAC	1 cut(s)	571
TspDTI	ATGAA	1 cut(s)	23
TspGWI	ACGGA	1 cut(s)	539
TspRI	CASTG	3 cut(s)	259, 292, 643
XapI	RAATTY	1 cut(s)	152
XceI	RCATGY	1 cut(s)	410
XmiI	GTMKAC	1 cut(s)	436
XspI	CTAG	5 cut(s)	96, 215, 441, 504, 643
ZrmI	AGTACT	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.