Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005180

Physical Location & Seq

Genomic Coordinates Reverse (-)

4959270 .. 4960031

Gene Structure 762 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG064600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGATACAACAACTAGTCAAATATCAAAGCTATATGGCTTCTCCTCCTCCACCGTCCTTGCCCACACCAAATCGCTCAACCCTACACGACTCTTCAATCTCTCCCATCTTTCAAAAAAATTCACGAATTTCCTTGCTTCGAATTCCCAACCCTCGCTCTGTATTTAGAGTTTATGTCAAACCAATTACAAATACAAATAGTAATCAAAATGATGCCGATCATGAGCAACGCTCTGTAGACAAATTCAAACTGGTCAGGAGAAACTTGCTATTCAGTGCGCTAGGATCAAAGATGAGTGAAATACCACCGGCTTTTAGTGAATCCGAAGCATATGCTGCGGCCGAGTCAACGCCCATGAAGCTAGTAGAACTCACTGAGTTCCCGATCACTTTGGACTCGGTGATCAGCGTCACTGTGCCGAGGCCGAAGAAGTGTCGGACAAAGGAGGAAAAGGAAGAGGAAGAGGAGGTGTTAGCGATTCAAGGGATCGAGTTTGTGGCGGATGAGTTTGTGAAGTTCGACGTGCATGTCAACGATGACGAAGAAGATCTGAGTCGACCCGATAACTCGGAATTTGCGGGGAGCTTTGTGTATTTGCCGCATCGGAGGAAGACAGTGACGACGAGTCTTAGGCTTGGGATAACGGACTTGTTGGACGATTTGGGTGCTGACGGTGATGACAGTATCAAGGTGACTTTGGTGCCAAAGCATGTGAAACGACCTGTCACTATTGGGAAGATCAAGATCGAGTTTCTCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00350 ko00950 ko01100 ko01110 map00350 map00950 map01100 map01110

Pfam Domains

Protein Families

PPO1_DWL PPO1_KFDV Tyrosinase

Protein Analysis

253

Amino Acids

28.54

Weight (kDa)

6.02

Isoelectric Point (pI)

57.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPO1_KFDV	PF12143	127 - 251	2e-47	Chloroplastic Polyphenol Oxidase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005180)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g04681 FvH4_3g04690
malus_domestica	MD10G1298200.v1.1
prunus_persica	Prupe.4G042000_v2.0.a1 Prupe.4G042100_v2.0.a1
pyrus_communis	pycom10g25130
rosa_chinensis	RchiOBHm_Chr5g0007721 RchiOBHm_Chr5g0007731
rosa_laevigata	RLG00000014973 RLG00000014974 RLG00000031481 RLG00000031482
rosa_multiflora	Rmu_sc0005098.1_g000022 Rmu_sc0005098.1_g000023
rosa_roxburghii	Rroxscaffold_1G00068680 Rroxscaffold_1G00068690
rosa_rugosa	Rorug04G0429700 Rorug04G0429800
rosa_samantha	Rh3AG210400 Rh5AG058100 Rh5AG058200 Rh5BG054700 Rh5BG054900 Rh5CG064600 Rh5CG064700 Rh5CG482400 Rh5DG053900 Rh5DG054000
rosa_wichuraiana	Rw5G006150 Rw5G006160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	527
AccB1I	GGYRCC	1 cut(s)	700
AccI	GTMKAC	2 cut(s)	237, 556
AciI	CCGC	4 cut(s)	338, 500, 578, 599
AclWI	GGATC	2 cut(s)	292, 494
AcoI	YGGCCR	1 cut(s)	339
AcsI	RAATTY	5 cut(s)	118, 126, 141, 242, 572
AgsI	TTSAA	4 cut(s)	96, 113, 247, 482
AhdI	GACNNNNNGTC	1 cut(s)	624
AhlI	ACTAGT	1 cut(s)	13
AjiI	CACGTC	1 cut(s)	523
AluBI	AGCT	3 cut(s)	30, 361, 585
AluI	AGCT	3 cut(s)	30, 361, 585
AlwI	GGATC	2 cut(s)	292, 494
AoxI	GGCC	2 cut(s)	339, 422
ApeKI	GCWGC	1 cut(s)	335
ApoI	RAATTY	5 cut(s)	118, 126, 141, 242, 572
AspLEI	GCGC	1 cut(s)	280
AsuHPI	GGTGA	3 cut(s)	412, 686, 703
AsuII	TTCGAA	1 cut(s)	139
BanI	GGYRCC	1 cut(s)	700
BbsI	GAAGAC	1 cut(s)	617
BbvI	GCAGC	1 cut(s)	322
BccI	CCATC	1 cut(s)	113
BcgI	CGANNNNNNTGC	4 cut(s)	314, 348, 647, 681
BclI	TGATCA	1 cut(s)	402
BcuI	ACTAGT	1 cut(s)	13
BfaI	CTAG	3 cut(s)	14, 281, 362
BfmI	CTRYAG	1 cut(s)	234
BglII	AGATCT	1 cut(s)	547
BisI	GCNGC	3 cut(s)	336, 339, 599
BlsI	GCNGC	3 cut(s)	337, 340, 600
BmeRI	GACNNNNNGTC	1 cut(s)	624
BmgBI	CACGTC	1 cut(s)	523
BmiI	GGNNCC	1 cut(s)	702
BmsI	GCATC	2 cut(s)	202, 610
BpiI	GAAGAC	1 cut(s)	617
BplI	GAGNNNNNCTC	2 cut(s)	215, 247
Bpu14I	TTCGAA	1 cut(s)	139
BsaBI	GATNNNNATC	2 cut(s)	216, 743
BsaJI	CCNNGG	1 cut(s)	419
Bse118I	RCCGGY	1 cut(s)	307
Bse1I	ACTGG	1 cut(s)	255
Bse8I	GATNNNNATC	2 cut(s)	216, 743
BseDI	CCNNGG	1 cut(s)	419
BseGI	GGATG	1 cut(s)	508
BseJI	GATNNNNATC	2 cut(s)	216, 743
BseMII	CTCAG	2 cut(s)	366, 542
BseNI	ACTGG	1 cut(s)	255
BseRI	GAGGAG	3 cut(s)	33, 36, 479
BseX3I	CGGCCG	1 cut(s)	339
BseXI	GCAGC	1 cut(s)	322
Bsh1285I	CGRYCG	1 cut(s)	342
BshFI	GGCC	2 cut(s)	341, 424
BshNI	GGYRCC	1 cut(s)	700
BsiEI	CGRYCG	1 cut(s)	342
BsiSI	CCGG	1 cut(s)	308
BsnI	GGCC	2 cut(s)	341, 424
Bsp119I	TTCGAA	1 cut(s)	139
Bsp143I	GATC	8 cut(s)	217, 284, 384, 402, 486, 547, 738, 744
BspACI	CCGC	4 cut(s)	338, 500, 578, 599
BspANI	GGCC	2 cut(s)	341, 424
BspCNI	CTCAG	2 cut(s)	367, 543
BspHI	TCATGA	1 cut(s)	220
BspLI	GGNNCC	1 cut(s)	702
BspPI	GGATC	2 cut(s)	292, 494
BspT104I	TTCGAA	1 cut(s)	139
BspT107I	GGYRCC	1 cut(s)	700
BsrFI	RCCGGY	1 cut(s)	307
BsrI	ACTGG	1 cut(s)	255
BssAI	RCCGGY	1 cut(s)	307
BssECI	CCNNGG	1 cut(s)	419
BssMI	GATC	8 cut(s)	217, 284, 384, 402, 486, 547, 738, 744
Bst4CI	ACNGT	5 cut(s)	54, 415, 616, 674, 683
Bst6I	CTCTTC	3 cut(s)	97, 450, 456
BstAPI	GCANNNNNTGC	1 cut(s)	335
BstBI	TTCGAA	1 cut(s)	139
BstDEI	CTNAG	3 cut(s)	375, 551, 629
BstF5I	GGATG	1 cut(s)	508
BstHHI	GCGC	1 cut(s)	280
BstKTI	GATC	8 cut(s)	220, 287, 387, 405, 489, 550, 741, 747
BstMBI	GATC	8 cut(s)	217, 284, 384, 402, 486, 547, 738, 744
BstMCI	CGRYCG	1 cut(s)	342
BstMWI	GCNNNNNNNGC	2 cut(s)	335, 358
BstNSI	RCATGY	2 cut(s)	530, 713
BstSFI	CTRYAG	1 cut(s)	234
BstV1I	GCAGC	1 cut(s)	322
BstV2I	GAAGAC	1 cut(s)	617
BstX2I	RGATCY	1 cut(s)	547
BstYI	RGATCY	1 cut(s)	547
BstZI	CGGCCG	1 cut(s)	339
BsuRI	GGCC	2 cut(s)	341, 424
BtrI	CACGTC	1 cut(s)	523
BtsCI	GGATG	1 cut(s)	508
BtsIMutI	CAGTG	4 cut(s)	280, 372, 411, 621
CciI	TCATGA	1 cut(s)	220
CfoI	GCGC	1 cut(s)	280
Cfr10I	RCCGGY	1 cut(s)	307
CseI	GACGC	1 cut(s)	397
CspCI	CAANNNNNGTGG	2 cut(s)	39, 74
CviAII	CATG	4 cut(s)	221, 355, 527, 710
CviJI	RGCY	8 cut(s)	30, 38, 311, 341, 361, 424, 585, 634
CviKI_1	RGCY	8 cut(s)	30, 38, 311, 341, 361, 424, 585, 634
DdeI	CTNAG	3 cut(s)	375, 551, 629
DpnI	GATC	8 cut(s)	219, 286, 386, 404, 488, 549, 740, 746
DpnII	GATC	8 cut(s)	217, 284, 384, 402, 486, 547, 738, 744
DrdI	GACNNNNNNGTC	1 cut(s)	527
DriI	GACNNNNNGTC	1 cut(s)	624
DseDI	GACNNNNNNGTC	1 cut(s)	527
EaeI	YGGCCR	1 cut(s)	339
EagI	CGGCCG	1 cut(s)	339
Eam1104I	CTCTTC	3 cut(s)	97, 450, 456
Eam1105I	GACNNNNNGTC	1 cut(s)	624
EarI	CTCTTC	3 cut(s)	97, 450, 456
EciI	GGCGGA	1 cut(s)	515
EclXI	CGGCCG	1 cut(s)	339
Eco52I	CGGCCG	1 cut(s)	339
EcoRI	GAATTC	1 cut(s)	141
FaeI	CATG	4 cut(s)	224, 358, 530, 713
FaiI	YATR	9 cut(s)	33, 35, 174, 222, 331, 333, 356, 528, 711
FatI	CATG	4 cut(s)	220, 354, 526, 709
FauI	CCCGC	1 cut(s)	571
FauNDI	CATATG	1 cut(s)	331
FbaI	TGATCA	1 cut(s)	402
FblI	GTMKAC	2 cut(s)	237, 556
Fnu4HI	GCNGC	3 cut(s)	336, 339, 599
FokI	GGATG	1 cut(s)	515
Fsp4HI	GCNGC	3 cut(s)	336, 339, 599
FspBI	CTAG	3 cut(s)	14, 281, 362
GlaI	GCGC	1 cut(s)	279
GluI	GCNGC	3 cut(s)	336, 339, 599
HaeIII	GGCC	2 cut(s)	341, 424
HapII	CCGG	1 cut(s)	308
HgaI	GACGC	1 cut(s)	397
HhaI	GCGC	1 cut(s)	280
Hin1II	CATG	4 cut(s)	224, 358, 530, 713
Hin6I	GCGC	1 cut(s)	278
HinP1I	GCGC	1 cut(s)	278
HincII	GTYRAC	3 cut(s)	348, 532, 557
HindII	GTYRAC	3 cut(s)	348, 532, 557
HinfI	GANTC	7 cut(s)	89, 320, 344, 395, 478, 553, 625
HpaII	CCGG	1 cut(s)	308
HphI	GGTGA	3 cut(s)	412, 686, 703
Hpy166II	GTNNAC	4 cut(s)	238, 348, 532, 557
Hpy188I	TCNGA	5 cut(s)	325, 438, 552, 571, 606
Hpy188III	TCNNGA	5 cut(s)	123, 221, 256, 382, 742
Hpy8I	GTNNAC	4 cut(s)	238, 348, 532, 557
Hpy99I	CGWCG	2 cut(s)	524, 625
HpyCH4III	ACNGT	5 cut(s)	54, 415, 616, 674, 683
HpyCH4IV	ACGT	1 cut(s)	522
HpyCH4V	TGCA	1 cut(s)	526
HpyF10VI	GCNNNNNNNGC	2 cut(s)	335, 358
HpyF3I	CTNAG	3 cut(s)	375, 551, 629
HpySE526I	ACGT	1 cut(s)	522
Hsp92II	CATG	4 cut(s)	224, 358, 530, 713
HspAI	GCGC	1 cut(s)	278
Ksp22I	TGATCA	1 cut(s)	402
Kzo9I	GATC	8 cut(s)	217, 284, 384, 402, 486, 547, 738, 744
LmnI	GCTCC	1 cut(s)	582
LpnPI	CCDG	4 cut(s)	236, 241, 321, 735
Lsp1109I	GCAGC	1 cut(s)	322
LweI	GCATC	2 cut(s)	202, 610
MaeI	CTAG	3 cut(s)	14, 281, 362
MaeII	ACGT	1 cut(s)	522
MaeIII	GTNAC	4 cut(s)	409, 616, 691, 724
MalI	GATC	8 cut(s)	219, 286, 386, 404, 488, 549, 740, 746
MboI	GATC	8 cut(s)	217, 284, 384, 402, 486, 547, 738, 744
MboII	GAAGA	8 cut(s)	84, 439, 467, 473, 554, 557, 622, 748
MflI	RGATCY	1 cut(s)	547
MluCI	AATT	6 cut(s)	118, 126, 141, 183, 242, 572
MlyI	GAGTC	5 cut(s)	83, 353, 389, 562, 634
MmeI	TCCRAC	2 cut(s)	416, 633
MnlI	CCTC	9 cut(s)	54, 57, 162, 414, 439, 451, 457, 460, 600
MspI	CCGG	1 cut(s)	308
MwoI	GCNNNNNNNGC	2 cut(s)	335, 358
NdeI	CATATG	1 cut(s)	331
NdeII	GATC	8 cut(s)	217, 284, 384, 402, 486, 547, 738, 744
NlaIII	CATG	4 cut(s)	224, 358, 530, 713
NlaIV	GGNNCC	1 cut(s)	702
NmeAIII	GCCGAG	2 cut(s)	367, 444
NmuCI	GTSAC	4 cut(s)	409, 616, 691, 724
NspI	RCATGY	2 cut(s)	530, 713
NspV	TTCGAA	1 cut(s)	139
PagI	TCATGA	1 cut(s)	220
PfeI	GAWTC	2 cut(s)	320, 478
PkrI	GCNGC	3 cut(s)	337, 340, 600
PleI	GAGTC	5 cut(s)	83, 352, 389, 561, 633
PpsI	GAGTC	5 cut(s)	83, 352, 389, 561, 633
PspN4I	GGNNCC	1 cut(s)	702
PsuI	RGATCY	1 cut(s)	547
SalI	GTCGAC	1 cut(s)	555
SatI	GCNGC	3 cut(s)	336, 339, 599
Sau3AI	GATC	8 cut(s)	217, 284, 384, 402, 486, 547, 738, 744
SchI	GAGTC	5 cut(s)	83, 353, 389, 562, 634
SetI	ASST	7 cut(s)	32, 363, 471, 525, 587, 693, 724
SfaNI	GCATC	2 cut(s)	202, 610
SfcI	CTRYAG	1 cut(s)	234
SfuI	TTCGAA	1 cut(s)	139
SpeI	ACTAGT	1 cut(s)	13
Sse9I	AATT	6 cut(s)	118, 126, 141, 183, 242, 572
SsiI	CCGC	4 cut(s)	338, 500, 578, 599
SspMI	CTAG	3 cut(s)	14, 281, 362
TaaI	ACNGT	5 cut(s)	54, 415, 616, 674, 683
TaiI	ACGT	1 cut(s)	525
TaqI	TCGA	5 cut(s)	139, 489, 519, 556, 747
TasI	AATT	6 cut(s)	118, 126, 141, 183, 242, 572
TauI	GCSGC	2 cut(s)	341, 601
TfiI	GAWTC	2 cut(s)	320, 478
TscAI	CASTG	4 cut(s)	280, 379, 418, 621
TseFI	GTSAC	4 cut(s)	409, 616, 691, 724
TseI	GCWGC	1 cut(s)	335
Tsp45I	GTSAC	4 cut(s)	409, 616, 691, 724
TspDTI	ATGAA	1 cut(s)	371
TspGWI	ACGGA	1 cut(s)	659
TspRI	CASTG	4 cut(s)	280, 379, 418, 621
XapI	RAATTY	5 cut(s)	118, 126, 141, 242, 572
XceI	RCATGY	2 cut(s)	530, 713
XmiI	GTMKAC	2 cut(s)	237, 556
XspI	CTAG	3 cut(s)	14, 281, 362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.