RLG00000014974

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0005180
Physical Location & Seq
Forward (+)
60131523 .. 60131928
406 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014974

Sequence Viewer

Length: 309 bp
ATGATCAGGTGGAGTCTTCGATGGCGGATGATTATTGGTTTTCGATGGAGGGTCCGTCTGGGTCTAATGGCAGATGATTCGCTGCTGCTGGGATGCAATCGACTGGCTCGAGCCGGAGAGGGAGTCGTCGGCGTCTGGGAGGTCGAGGTCAGCTTGTACAGGTGGAGTCTTCGCCGGTGGGCTGGAGTCGTTGTTGAGGCCACTGAGATTGCTGGTCGGGCTGGAGTCGTCGTCCTGTCCCTGTCGGCGTCGAGATGGCCGGAGTCAGAGGAGCTTATGGAGTCTGGGTCAAATCTGGTGTATGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.55

Weight (kDa)

9.28

Isoelectric Point (pI)

65.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 25
AcoI YGGCCR 1 cut(s) 257
AcyI GRCGYC 2 cut(s) 132, 248
AfaI GTAC 1 cut(s) 158
AluBI AGCT 2 cut(s) 153, 274
AluI AGCT 2 cut(s) 153, 274
Ama87I CYCGRG 1 cut(s) 108
AoxI GGCC 2 cut(s) 198, 257
ApeKI GCWGC 2 cut(s) 82, 85
AspS9I GGNCC 1 cut(s) 52
AvaI CYCGRG 1 cut(s) 108
AvaII GGWCC 1 cut(s) 52
BbsI GAAGAC 2 cut(s) 8, 161
BbvI GCAGC 2 cut(s) 69, 72
BccI CCATC 3 cut(s) 15, 39, 249
BcgI CGANNNNNNTGC 2 cut(s) 60, 94
BclI TGATCA 1 cut(s) 3
BisI GCNGC 2 cut(s) 83, 86
BlsI GCNGC 2 cut(s) 84, 87
Bme18I GGWCC 1 cut(s) 52
BmeT110I CYCGRG 1 cut(s) 108
BmgT120I GGNCC 1 cut(s) 52
BmiI GGNNCC 1 cut(s) 53
BmsI GCATC 1 cut(s) 83
BpiI GAAGAC 2 cut(s) 8, 161
BpmI CTGGAG 2 cut(s) 204, 243
BsaHI GRCGYC 2 cut(s) 132, 248
Bse118I RCCGGY 1 cut(s) 174
Bse1I ACTGG 1 cut(s) 108
BseGI GGATG 2 cut(s) 33, 98
BseMII CTCAG 1 cut(s) 195
BseNI ACTGG 1 cut(s) 108
BseRI GAGGAG 1 cut(s) 284
BseXI GCAGC 2 cut(s) 69, 72
BseYI CCCAGC 1 cut(s) 88
BshFI GGCC 2 cut(s) 200, 259
BsiHKCI CYCGRG 1 cut(s) 108
BsiSI CCGG 3 cut(s) 114, 175, 260
BslFI GGGAC 1 cut(s) 223
BsmFI GGGAC 1 cut(s) 223
BsnI GGCC 2 cut(s) 200, 259
BsoBI CYCGRG 1 cut(s) 108
Bsp1407I TGTACA 1 cut(s) 156
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 1 cut(s) 25
BspANI GGCC 2 cut(s) 200, 259
BspCNI CTCAG 1 cut(s) 196
BspLI GGNNCC 1 cut(s) 53
BsrFI RCCGGY 1 cut(s) 174
BsrGI TGTACA 1 cut(s) 156
BsrI ACTGG 1 cut(s) 108
BssAI RCCGGY 1 cut(s) 174
BssMI GATC 1 cut(s) 3
BssNI GRCGYC 2 cut(s) 132, 248
BstACI GRCGYC 2 cut(s) 132, 248
BstAUI TGTACA 1 cut(s) 156
BstDEI CTNAG 1 cut(s) 204
BstF5I GGATG 2 cut(s) 33, 98
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstV1I GCAGC 2 cut(s) 69, 72
BstV2I GAAGAC 2 cut(s) 8, 161
BsuRI GGCC 2 cut(s) 200, 259
BtsCI GGATG 2 cut(s) 33, 98
BtsIMutI CAGTG 1 cut(s) 201
Cfr10I RCCGGY 1 cut(s) 174
Cfr13I GGNCC 1 cut(s) 52
CseI GACGC 2 cut(s) 121, 237
Csp6I GTAC 1 cut(s) 157
CspCI CAANNNNNGTGG 2 cut(s) 190, 225
CviJI RGCY 8 cut(s) 107, 113, 153, 182, 200, 221, 259, 274
CviKI_1 RGCY 8 cut(s) 107, 113, 153, 182, 200, 221, 259, 274
CviQI GTAC 1 cut(s) 157
DdeI CTNAG 1 cut(s) 204
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
EaeI YGGCCR 1 cut(s) 257
EciI GGCGGA 1 cut(s) 40
Eco47I GGWCC 1 cut(s) 52
Eco88I CYCGRG 1 cut(s) 108
FaiI YATR 2 cut(s) 278, 303
FaqI GGGAC 1 cut(s) 223
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 2 cut(s) 83, 86
FokI GGATG 2 cut(s) 40, 105
Fsp4HI GCNGC 2 cut(s) 83, 86
GluI GCNGC 2 cut(s) 83, 86
GsaI CCCAGC 1 cut(s) 92
GsuI CTGGAG 2 cut(s) 204, 243
HaeIII GGCC 2 cut(s) 200, 259
HapII CCGG 3 cut(s) 114, 175, 260
HgaI GACGC 2 cut(s) 121, 237
Hin1I GRCGYC 2 cut(s) 132, 248
HinfI GANTC 8 cut(s) 13, 77, 123, 166, 186, 225, 263, 281
HpaII CCGG 3 cut(s) 114, 175, 260
Hpy188I TCNGA 1 cut(s) 268
Hpy188III TCNNGA 1 cut(s) 252
Hpy99I CGWCG 3 cut(s) 131, 233, 253
HpyCH4V TGCA 1 cut(s) 96
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
HpyF3I CTNAG 1 cut(s) 204
Hsp92I GRCGYC 2 cut(s) 132, 248
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 1 cut(s) 271
Lsp1109I GCAGC 2 cut(s) 69, 72
LweI GCATC 1 cut(s) 83
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 2 cut(s) 8, 161
MlyI GAGTC 7 cut(s) 22, 132, 175, 195, 234, 272, 290
MnlI CCTC 6 cut(s) 42, 112, 133, 139, 190, 262
MspI CCGG 3 cut(s) 114, 175, 260
MwoI GCNNNNNNNGC 1 cut(s) 218
NdeII GATC 1 cut(s) 3
NlaIV GGNNCC 1 cut(s) 53
PaeR7I CTCGAG 1 cut(s) 108
PcsI WCGNNNNNNNCGW 1 cut(s) 106
PfeI GAWTC 1 cut(s) 77
PkrI GCNGC 2 cut(s) 84, 87
PleI GAGTC 7 cut(s) 21, 131, 174, 194, 233, 271, 289
PpsI GAGTC 7 cut(s) 21, 131, 174, 194, 233, 271, 289
PspFI CCCAGC 1 cut(s) 88
PspN4I GGNNCC 1 cut(s) 53
PspPI GGNCC 1 cut(s) 52
PspXI VCTCGAGB 1 cut(s) 108
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
SatI GCNGC 2 cut(s) 83, 86
Sau3AI GATC 1 cut(s) 3
Sau96I GGNCC 1 cut(s) 52
SchI GAGTC 7 cut(s) 22, 132, 175, 195, 234, 272, 290
SetI ASST 6 cut(s) 11, 144, 150, 155, 164, 276
SfaNI GCATC 1 cut(s) 83
Sfr274I CTCGAG 1 cut(s) 108
SgrAI CRCCGGYG 1 cut(s) 174
SinI GGWCC 1 cut(s) 52
SlaI CTCGAG 1 cut(s) 108
SmlI CTYRAG 1 cut(s) 108
SmoI CTYRAG 1 cut(s) 108
SsiI CCGC 1 cut(s) 25
TaqI TCGA 6 cut(s) 19, 43, 100, 109, 144, 251
TatI WGTACW 1 cut(s) 156
TfiI GAWTC 1 cut(s) 77
TscAI CASTG 1 cut(s) 208
TseI GCWGC 2 cut(s) 82, 85
TspGWI ACGGA 1 cut(s) 44
TspRI CASTG 1 cut(s) 208
VpaK11BI GGWCC 1 cut(s) 52
XhoI CTCGAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.