Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0005180

Physical Location & Seq

Genomic Coordinates Reverse (-)

1983060 .. 1983533

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G042000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGAGCCAAGCAACAGGGGATTTGGGTGAACCAGCAGCAGCATATGCGGCCGAGACTTCTTCAGACAACAAGGTTGTGGAACTCACTCAGTTCCCGATCACTCTTGACTCGGTGATCAGCGTGGTTGTGCCGCGGCCCAAGAAGTCGAGAACCAAGAAGGAGAAGGAAGAAGAAGAAGAGGTGCTGGCGATTCAGGGGATTGAGTTCTTGGCAGACGAGGCTGTGAAGTTCGACGTGCACGTGAACGACGACGAGGACTCGCTGAGTCGACCCGACGAGTCCGAGTTCGCAGGAAGCTTTGTGTATTTGCCGCATAAGAGGAAGAGGGTGACGACCAGCCTCAGGCTTGGGATCACGGACTTATTGGACGACGTGGGCGCCGACGGCGATGACAGCATCAAGGTCACTCTGGTCCCTAAGTATGTGAAACGACCTGTCACAATTCGTCACATCAAGATCGAGTTTCTGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00350 ko00950 ko01100 ko01110 map00350 map00950 map01100 map01110

Pfam Domains

Protein Families

PPO1_DWL PPO1_KFDV Tyrosinase

Protein Analysis

158

Amino Acids

17.44

Weight (kDa)

4.96

Isoelectric Point (pI)

56.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005180)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g04681 FvH4_3g04690
malus_domestica	MD10G1298200.v1.1
prunus_persica	Prupe.4G042000_v2.0.a1 Prupe.4G042100_v2.0.a1
pyrus_communis	pycom10g25130
rosa_chinensis	RchiOBHm_Chr5g0007721 RchiOBHm_Chr5g0007731
rosa_laevigata	RLG00000014973 RLG00000014974 RLG00000031481 RLG00000031482
rosa_multiflora	Rmu_sc0005098.1_g000022 Rmu_sc0005098.1_g000023
rosa_roxburghii	Rroxscaffold_1G00068680 Rroxscaffold_1G00068690
rosa_rugosa	Rorug04G0429700 Rorug04G0429800
rosa_samantha	Rh3AG210400 Rh5AG058100 Rh5AG058200 Rh5BG054700 Rh5BG054900 Rh5CG064600 Rh5CG064700 Rh5CG482400 Rh5DG053900 Rh5DG054000
rosa_wichuraiana	Rw5G006150 Rw5G006160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	377
AccI	GTMKAC	1 cut(s)	268
AccII	CGCG	1 cut(s)	133
AciI	CCGC	4 cut(s)	47, 131, 133, 311
AclWI	GGATC	1 cut(s)	359
AcoI	YGGCCR	1 cut(s)	48
AcuI	CTGAAG	1 cut(s)	45
AcvI	CACGTG	1 cut(s)	241
AcyI	GRCGYC	1 cut(s)	378
AfiI	CCNNNNNNNGG	1 cut(s)	342
AjiI	CACGTC	2 cut(s)	235, 373
AluBI	AGCT	1 cut(s)	297
AluI	AGCT	1 cut(s)	297
Alw21I	GWGCWC	1 cut(s)	240
Alw26I	GTCTC	1 cut(s)	47
Alw44I	GTGCAC	1 cut(s)	236
AlwI	GGATC	1 cut(s)	359
AoxI	GGCC	2 cut(s)	48, 134
ApaLI	GTGCAC	1 cut(s)	236
ApeKI	GCWGC	2 cut(s)	35, 38
AspLEI	GCGC	1 cut(s)	380
AspS9I	GGNCC	2 cut(s)	135, 412
AsuHPI	GGTGA	3 cut(s)	38, 124, 340
AvaII	GGWCC	1 cut(s)	412
AxyI	CCTNAGG	1 cut(s)	341
BaeGI	GKGCMC	1 cut(s)	240
BanI	GGYRCC	1 cut(s)	377
BbrPI	CACGTG	1 cut(s)	241
Bbv12I	GWGCWC	1 cut(s)	240
BbvI	GCAGC	2 cut(s)	47, 50
BceAI	ACGGC	1 cut(s)	400
BclI	TGATCA	1 cut(s)	114
BcoDI	GTCTC	1 cut(s)	47
BfoI	RGCGCY	1 cut(s)	381
BisI	GCNGC	6 cut(s)	36, 39, 48, 131, 134, 311
BlsI	GCNGC	6 cut(s)	37, 40, 49, 132, 135, 312
Bme18I	GGWCC	1 cut(s)	412
BmgBI	CACGTC	2 cut(s)	235, 373
BmgT120I	GGNCC	2 cut(s)	135, 412
BmiI	GGNNCC	2 cut(s)	379, 414
BmsI	GCATC	1 cut(s)	405
BsaAI	YACGTR	1 cut(s)	241
BsaHI	GRCGYC	1 cut(s)	378
BsaJI	CCNNGG	1 cut(s)	131
Bsc4I	CCNNNNNNNGG	1 cut(s)	342
Bse21I	CCTNAGG	1 cut(s)	341
BseDI	CCNNGG	1 cut(s)	131
BseLI	CCNNNNNNNGG	1 cut(s)	342
BseMII	CTCAG	3 cut(s)	101, 254, 355
BseSI	GKGCMC	1 cut(s)	240
BseX3I	CGGCCG	1 cut(s)	48
BseXI	GCAGC	2 cut(s)	47, 50
Bsh1236I	CGCG	1 cut(s)	133
Bsh1285I	CGRYCG	1 cut(s)	51
BshFI	GGCC	2 cut(s)	50, 136
BshNI	GGYRCC	1 cut(s)	377
BsiEI	CGRYCG	1 cut(s)	51
BsiHKAI	GWGCWC	1 cut(s)	240
BslFI	GGGAC	1 cut(s)	398
BslI	CCNNNNNNNGG	1 cut(s)	342
BsmAI	GTCTC	1 cut(s)	47
BsmFI	GGGAC	1 cut(s)	398
BsnI	GGCC	2 cut(s)	50, 136
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp143I	GATC	4 cut(s)	96, 114, 351, 456
BspACI	CCGC	4 cut(s)	47, 131, 133, 311
BspANI	GGCC	2 cut(s)	50, 136
BspCNI	CTCAG	3 cut(s)	100, 255, 354
BspFNI	CGCG	1 cut(s)	133
BspLI	GGNNCC	2 cut(s)	379, 414
BspPI	GGATC	1 cut(s)	359
BspT107I	GGYRCC	1 cut(s)	377
BssECI	CCNNGG	1 cut(s)	131
BssMI	GATC	4 cut(s)	96, 114, 351, 456
BssNI	GRCGYC	1 cut(s)	378
Bst6I	CTCTTC	2 cut(s)	171, 317
BstACI	GRCGYC	1 cut(s)	378
BstAPI	GCANNNNNTGC	1 cut(s)	44
BstBAI	YACGTR	1 cut(s)	241
BstC8I	GCNNGC	1 cut(s)	186
BstDEI	CTNAG	4 cut(s)	87, 263, 341, 417
BstDSI	CCRYGG	1 cut(s)	131
BstFNI	CGCG	1 cut(s)	133
BstH2I	RGCGCY	1 cut(s)	381
BstHHI	GCGC	1 cut(s)	380
BstKTI	GATC	4 cut(s)	99, 117, 354, 459
BstMAI	GTCTC	1 cut(s)	47
BstMBI	GATC	4 cut(s)	96, 114, 351, 456
BstMCI	CGRYCG	1 cut(s)	51
BstMWI	GCNNNNNNNGC	5 cut(s)	44, 47, 218, 384, 393
BstSLI	GKGCMC	1 cut(s)	240
BstUI	CGCG	1 cut(s)	133
BstV1I	GCAGC	2 cut(s)	47, 50
BstZI	CGGCCG	1 cut(s)	48
Bsu36I	CCTNAGG	1 cut(s)	341
BsuRI	GGCC	2 cut(s)	50, 136
BtgI	CCRYGG	1 cut(s)	131
BtgZI	GCGATG	1 cut(s)	402
BtrI	CACGTC	2 cut(s)	235, 373
Cac8I	GCNNGC	1 cut(s)	186
CfoI	GCGC	1 cut(s)	380
Cfr13I	GGNCC	2 cut(s)	135, 412
Cfr42I	CCGCGG	1 cut(s)	134
CviJI	RGCY	7 cut(s)	6, 50, 136, 221, 297, 339, 346
CviKI_1	RGCY	7 cut(s)	6, 50, 136, 221, 297, 339, 346
DdeI	CTNAG	4 cut(s)	87, 263, 341, 417
DinI	GGCGCC	1 cut(s)	379
DpnI	GATC	4 cut(s)	98, 116, 353, 458
DpnII	GATC	4 cut(s)	96, 114, 351, 456
EaeI	YGGCCR	1 cut(s)	48
EagI	CGGCCG	1 cut(s)	48
Eam1104I	CTCTTC	2 cut(s)	171, 317
EarI	CTCTTC	2 cut(s)	171, 317
EclXI	CGGCCG	1 cut(s)	48
Eco47I	GGWCC	1 cut(s)	412
Eco52I	CGGCCG	1 cut(s)	48
Eco57I	CTGAAG	1 cut(s)	45
Eco72I	CACGTG	1 cut(s)	241
Eco81I	CCTNAGG	1 cut(s)	341
EgeI	GGCGCC	1 cut(s)	379
EheI	GGCGCC	1 cut(s)	379
FaiI	YATR	4 cut(s)	43, 45, 315, 423
FaqI	GGGAC	1 cut(s)	398
FauNDI	CATATG	1 cut(s)	43
FbaI	TGATCA	1 cut(s)	114
FblI	GTMKAC	1 cut(s)	268
Fnu4HI	GCNGC	6 cut(s)	36, 39, 48, 131, 134, 311
Fsp4HI	GCNGC	6 cut(s)	36, 39, 48, 131, 134, 311
GlaI	GCGC	1 cut(s)	379
GluI	GCNGC	6 cut(s)	36, 39, 48, 131, 134, 311
HaeII	RGCGCY	1 cut(s)	381
HaeIII	GGCC	2 cut(s)	50, 136
HhaI	GCGC	1 cut(s)	380
Hin1I	GRCGYC	1 cut(s)	378
Hin6I	GCGC	1 cut(s)	378
HinP1I	GCGC	1 cut(s)	378
HincII	GTYRAC	1 cut(s)	269
HindII	GTYRAC	1 cut(s)	269
HindIII	AAGCTT	1 cut(s)	295
HinfI	GANTC	5 cut(s)	107, 190, 257, 265, 278
HphI	GGTGA	3 cut(s)	38, 124, 340
Hpy166II	GTNNAC	4 cut(s)	29, 238, 244, 269
Hpy188I	TCNGA	3 cut(s)	64, 283, 468
Hpy188III	TCNNGA	4 cut(s)	94, 104, 147, 454
Hpy8I	GTNNAC	4 cut(s)	29, 238, 244, 269
Hpy99I	CGWCG	6 cut(s)	236, 251, 254, 278, 374, 386
HpyAV	CCTTC	2 cut(s)	151, 157
HpyCH4IV	ACGT	3 cut(s)	234, 240, 372
HpyCH4V	TGCA	1 cut(s)	238
HpyF10VI	GCNNNNNNNGC	5 cut(s)	44, 47, 218, 384, 393
HpyF3I	CTNAG	4 cut(s)	87, 263, 341, 417
HpySE526I	ACGT	3 cut(s)	234, 240, 372
Hsp92I	GRCGYC	1 cut(s)	378
HspAI	GCGC	1 cut(s)	378
KasI	GGCGCC	1 cut(s)	377
Ksp22I	TGATCA	1 cut(s)	114
KspI	CCGCGG	1 cut(s)	134
Kzo9I	GATC	4 cut(s)	96, 114, 351, 456
LpnPI	CCDG	8 cut(s)	45, 170, 179, 276, 328, 349, 395, 447
Lsp1109I	GCAGC	2 cut(s)	47, 50
LweI	GCATC	1 cut(s)	405
MaeII	ACGT	3 cut(s)	234, 240, 372
MaeIII	GTNAC	4 cut(s)	328, 403, 436, 446
MalI	GATC	4 cut(s)	98, 116, 353, 458
MboI	GATC	4 cut(s)	96, 114, 351, 456
MboII	GAAGA	6 cut(s)	51, 179, 182, 185, 188, 334
MhlI	GDGCHC	1 cut(s)	240
MluCI	AATT	1 cut(s)	441
Mly113I	GGCGCC	1 cut(s)	378
MlyI	GAGTC	4 cut(s)	101, 251, 274, 287
MnlI	CCTC	6 cut(s)	172, 211, 247, 312, 318, 350
MspA1I	CMGCKG	1 cut(s)	133
MvnI	CGCG	1 cut(s)	133
MwoI	GCNNNNNNNGC	5 cut(s)	44, 47, 218, 384, 393
NarI	GGCGCC	1 cut(s)	378
NdeI	CATATG	1 cut(s)	43
NdeII	GATC	4 cut(s)	96, 114, 351, 456
NlaIV	GGNNCC	2 cut(s)	379, 414
NmeAIII	GCCGAG	1 cut(s)	76
NmuCI	GTSAC	4 cut(s)	328, 403, 436, 446
PcsI	WCGNNNNNNNCGW	3 cut(s)	237, 246, 378
PfeI	GAWTC	1 cut(s)	190
PkrI	GCNGC	6 cut(s)	37, 40, 49, 132, 135, 312
PleI	GAGTC	4 cut(s)	101, 251, 273, 286
PluTI	GGCGCC	1 cut(s)	381
PmaCI	CACGTG	1 cut(s)	241
PmlI	CACGTG	1 cut(s)	241
PpsI	GAGTC	4 cut(s)	101, 251, 273, 286
Ppu21I	YACGTR	1 cut(s)	241
PspCI	CACGTG	1 cut(s)	241
PspN4I	GGNNCC	2 cut(s)	379, 414
PspPI	GGNCC	2 cut(s)	135, 412
SacII	CCGCGG	1 cut(s)	134
SalI	GTCGAC	1 cut(s)	267
SatI	GCNGC	6 cut(s)	36, 39, 48, 131, 134, 311
Sau3AI	GATC	4 cut(s)	96, 114, 351, 456
Sau96I	GGNCC	2 cut(s)	135, 412
SchI	GAGTC	4 cut(s)	101, 251, 274, 287
SduI	GDGCHC	1 cut(s)	240
SetI	ASST	8 cut(s)	75, 183, 237, 243, 299, 375, 405, 436
SfaNI	GCATC	1 cut(s)	405
SfoI	GGCGCC	1 cut(s)	379
Sfr303I	CCGCGG	1 cut(s)	134
SgrBI	CCGCGG	1 cut(s)	134
SinI	GGWCC	1 cut(s)	412
Sse9I	AATT	1 cut(s)	441
SsiI	CCGC	4 cut(s)	47, 131, 133, 311
SspDI	GGCGCC	1 cut(s)	377
TaiI	ACGT	3 cut(s)	237, 243, 375
TaqI	TCGA	4 cut(s)	146, 231, 268, 459
TasI	AATT	1 cut(s)	441
TauI	GCSGC	4 cut(s)	50, 133, 136, 313
TfiI	GAWTC	1 cut(s)	190
TseFI	GTSAC	4 cut(s)	328, 403, 436, 446
TseI	GCWGC	2 cut(s)	35, 38
Tsp45I	GTSAC	4 cut(s)	328, 403, 436, 446
TspGWI	ACGGA	1 cut(s)	371
VneI	GTGCAC	1 cut(s)	236
VpaK11BI	GGWCC	1 cut(s)	412
XmiI	GTMKAC	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.