Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0005180

Physical Location & Seq

Genomic Coordinates Reverse (-)

4636370 .. 4637095

Gene Structure 726 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG053900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGCTTCTCCTCCTCCACCGTCCTTGCCCACACCAAATCGCTCAACCCTACACGACTCTTCAATCTCTCCCATCTTTCAAAAAAATTCACGAATTTCCTTGCTTCGAATTCCCAACGCTCGCTCTGTATTTAGAGTTTATGTCAAACCAATTACAAATACAAATAGTAATCAAAATGATGCTGATCATGAGCAACGCTCTGTAGACAAATTCAAACTGGTCAGGAGAAACTTGCTATTCAGTGCGCTAGGATCAAAGATGAGTGAAATACCACCGGCTTTTAGTGAATCCGAAGCATATGCTGCGGCCAAGTCAACCATGAAGCTAGTAGAACTCAATGAGTTCCCGATCACTTTGGACTCGGTGATCAGCGTCACTGTGCCGAGGCCGAAGAAGTGTCGGACAAAGGAGGAAAAGGAAGAGGAAGAGGAGGTGTTAGCGATTCAAGGGATCGAGTTTGTGGCGGATGAGTTTGTGAAGTTCGACGTGCATGTCAACGATGACGAAGAAGATCTGAGTCGACCCGATAACTCGGAATTTGCGGGGAGCTTTGTGTATTTGCCGCATCGGAGGAAGACCGTGACGACGAGTCTTAGGCTTGGGATAACGGACTTGTTGGACGATTTGGGTGCTGACGGTGATGACAGTATCAAGGTGACTTTGGTGCCAAAGCATGTGAAGCGACCTGTCACTATTGGGAAGATCAAGATCGAGTTTCTCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00350 ko00950 ko01100 ko01110 map00350 map00950 map01100 map01110

Pfam Domains

Protein Families

PPO1_DWL PPO1_KFDV Tyrosinase

Protein Analysis

241

Amino Acids

27.04

Weight (kDa)

6.25

Isoelectric Point (pI)

55.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPO1_KFDV	PF12143	115 - 239	1.8e-47	Chloroplastic Polyphenol Oxidase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005180)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g04681 FvH4_3g04690
malus_domestica	MD10G1298200.v1.1
prunus_persica	Prupe.4G042000_v2.0.a1 Prupe.4G042100_v2.0.a1
pyrus_communis	pycom10g25130
rosa_chinensis	RchiOBHm_Chr5g0007721 RchiOBHm_Chr5g0007731
rosa_laevigata	RLG00000014973 RLG00000014974 RLG00000031481 RLG00000031482
rosa_multiflora	Rmu_sc0005098.1_g000022 Rmu_sc0005098.1_g000023
rosa_roxburghii	Rroxscaffold_1G00068680 Rroxscaffold_1G00068690
rosa_rugosa	Rorug04G0429700 Rorug04G0429800
rosa_samantha	Rh3AG210400 Rh5AG058100 Rh5AG058200 Rh5BG054700 Rh5BG054900 Rh5CG064600 Rh5CG064700 Rh5CG482400 Rh5DG053900 Rh5DG054000
rosa_wichuraiana	Rw5G006150 Rw5G006160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	491
AccB1I	GGYRCC	1 cut(s)	664
AccI	GTMKAC	2 cut(s)	204, 520
AciI	CCGC	4 cut(s)	305, 464, 542, 563
AclWI	GGATC	2 cut(s)	259, 458
AcoI	YGGCCR	1 cut(s)	306
AcsI	RAATTY	5 cut(s)	85, 93, 108, 209, 536
AgsI	TTSAA	4 cut(s)	63, 80, 214, 446
AhdI	GACNNNNNGTC	1 cut(s)	588
AjiI	CACGTC	1 cut(s)	487
AluBI	AGCT	2 cut(s)	325, 549
AluI	AGCT	2 cut(s)	325, 549
AlwI	GGATC	2 cut(s)	259, 458
AoxI	GGCC	2 cut(s)	306, 386
ApeKI	GCWGC	1 cut(s)	302
ApoI	RAATTY	5 cut(s)	85, 93, 108, 209, 536
AspLEI	GCGC	1 cut(s)	247
AsuHPI	GGTGA	3 cut(s)	376, 650, 667
AsuII	TTCGAA	1 cut(s)	106
BanI	GGYRCC	1 cut(s)	664
BbsI	GAAGAC	1 cut(s)	581
BbvI	GCAGC	1 cut(s)	289
BccI	CCATC	1 cut(s)	80
BcgI	CGANNNNNNTGC	4 cut(s)	281, 315, 611, 645
BclI	TGATCA	2 cut(s)	184, 366
BfaI	CTAG	2 cut(s)	248, 326
BfmI	CTRYAG	1 cut(s)	201
BglII	AGATCT	1 cut(s)	511
BisI	GCNGC	3 cut(s)	303, 306, 563
BlsI	GCNGC	3 cut(s)	304, 307, 564
BmeRI	GACNNNNNGTC	1 cut(s)	588
BmgBI	CACGTC	1 cut(s)	487
BmiI	GGNNCC	1 cut(s)	666
BmsI	GCATC	2 cut(s)	169, 574
BpiI	GAAGAC	1 cut(s)	581
BplI	GAGNNNNNCTC	2 cut(s)	182, 214
Bpu14I	TTCGAA	1 cut(s)	106
BsaBI	GATNNNNATC	2 cut(s)	183, 707
BsaJI	CCNNGG	1 cut(s)	383
Bse118I	RCCGGY	1 cut(s)	274
Bse1I	ACTGG	1 cut(s)	222
Bse8I	GATNNNNATC	2 cut(s)	183, 707
BseDI	CCNNGG	1 cut(s)	383
BseGI	GGATG	1 cut(s)	472
BseJI	GATNNNNATC	2 cut(s)	183, 707
BseMII	CTCAG	1 cut(s)	506
BseNI	ACTGG	1 cut(s)	222
BseRI	GAGGAG	1 cut(s)	443
BseXI	GCAGC	1 cut(s)	289
BshFI	GGCC	2 cut(s)	308, 388
BshNI	GGYRCC	1 cut(s)	664
BsiSI	CCGG	1 cut(s)	275
BsnI	GGCC	2 cut(s)	308, 388
Bsp119I	TTCGAA	1 cut(s)	106
Bsp143I	GATC	8 cut(s)	184, 251, 348, 366, 450, 511, 702, 708
BspACI	CCGC	4 cut(s)	305, 464, 542, 563
BspANI	GGCC	2 cut(s)	308, 388
BspCNI	CTCAG	1 cut(s)	507
BspHI	TCATGA	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	666
BspPI	GGATC	2 cut(s)	259, 458
BspT104I	TTCGAA	1 cut(s)	106
BspT107I	GGYRCC	1 cut(s)	664
BsrFI	RCCGGY	1 cut(s)	274
BsrI	ACTGG	1 cut(s)	222
BssAI	RCCGGY	1 cut(s)	274
BssECI	CCNNGG	1 cut(s)	383
BssMI	GATC	8 cut(s)	184, 251, 348, 366, 450, 511, 702, 708
Bst4CI	ACNGT	5 cut(s)	21, 379, 580, 638, 647
Bst6I	CTCTTC	3 cut(s)	64, 414, 420
BstAPI	GCANNNNNTGC	1 cut(s)	302
BstBI	TTCGAA	1 cut(s)	106
BstC8I	GCNNGC	1 cut(s)	121
BstDEI	CTNAG	2 cut(s)	515, 593
BstF5I	GGATG	1 cut(s)	472
BstHHI	GCGC	1 cut(s)	247
BstKTI	GATC	8 cut(s)	187, 254, 351, 369, 453, 514, 705, 711
BstMBI	GATC	8 cut(s)	184, 251, 348, 366, 450, 511, 702, 708
BstMWI	GCNNNNNNNGC	2 cut(s)	302, 679
BstNSI	RCATGY	2 cut(s)	494, 677
BstSFI	CTRYAG	1 cut(s)	201
BstV1I	GCAGC	1 cut(s)	289
BstV2I	GAAGAC	1 cut(s)	581
BstX2I	RGATCY	1 cut(s)	511
BstYI	RGATCY	1 cut(s)	511
BsuRI	GGCC	2 cut(s)	308, 388
BtrI	CACGTC	1 cut(s)	487
BtsCI	GGATG	1 cut(s)	472
BtsIMutI	CAGTG	2 cut(s)	247, 375
Cac8I	GCNNGC	1 cut(s)	121
CciI	TCATGA	1 cut(s)	187
CfoI	GCGC	1 cut(s)	247
Cfr10I	RCCGGY	1 cut(s)	274
CseI	GACGC	1 cut(s)	361
CspCI	CAANNNNNGTGG	2 cut(s)	6, 41
CviAII	CATG	4 cut(s)	188, 319, 491, 674
CviJI	RGCY	7 cut(s)	5, 278, 308, 325, 388, 549, 598
CviKI_1	RGCY	7 cut(s)	5, 278, 308, 325, 388, 549, 598
DdeI	CTNAG	2 cut(s)	515, 593
DpnI	GATC	8 cut(s)	186, 253, 350, 368, 452, 513, 704, 710
DpnII	GATC	8 cut(s)	184, 251, 348, 366, 450, 511, 702, 708
DrdI	GACNNNNNNGTC	1 cut(s)	491
DriI	GACNNNNNGTC	1 cut(s)	588
DseDI	GACNNNNNNGTC	1 cut(s)	491
EaeI	YGGCCR	1 cut(s)	306
Eam1104I	CTCTTC	3 cut(s)	64, 414, 420
Eam1105I	GACNNNNNGTC	1 cut(s)	588
EarI	CTCTTC	3 cut(s)	64, 414, 420
EciI	GGCGGA	1 cut(s)	479
EcoRI	GAATTC	1 cut(s)	108
FaeI	CATG	4 cut(s)	191, 322, 494, 677
FaiI	YATR	7 cut(s)	141, 189, 298, 300, 320, 492, 675
FatI	CATG	4 cut(s)	187, 318, 490, 673
FauI	CCCGC	1 cut(s)	535
FauNDI	CATATG	1 cut(s)	298
FbaI	TGATCA	2 cut(s)	184, 366
FblI	GTMKAC	2 cut(s)	204, 520
Fnu4HI	GCNGC	3 cut(s)	303, 306, 563
FokI	GGATG	1 cut(s)	479
Fsp4HI	GCNGC	3 cut(s)	303, 306, 563
FspBI	CTAG	2 cut(s)	248, 326
GlaI	GCGC	1 cut(s)	246
GluI	GCNGC	3 cut(s)	303, 306, 563
HaeIII	GGCC	2 cut(s)	308, 388
HapII	CCGG	1 cut(s)	275
HgaI	GACGC	1 cut(s)	361
HhaI	GCGC	1 cut(s)	247
Hin1II	CATG	4 cut(s)	191, 322, 494, 677
Hin6I	GCGC	1 cut(s)	245
HinP1I	GCGC	1 cut(s)	245
HincII	GTYRAC	3 cut(s)	315, 496, 521
HindII	GTYRAC	3 cut(s)	315, 496, 521
HinfI	GANTC	6 cut(s)	56, 287, 359, 442, 517, 589
HpaII	CCGG	1 cut(s)	275
HphI	GGTGA	3 cut(s)	376, 650, 667
Hpy166II	GTNNAC	4 cut(s)	205, 315, 496, 521
Hpy188I	TCNGA	5 cut(s)	292, 402, 516, 535, 570
Hpy188III	TCNNGA	5 cut(s)	90, 188, 223, 346, 706
Hpy8I	GTNNAC	4 cut(s)	205, 315, 496, 521
Hpy99I	CGWCG	2 cut(s)	488, 589
HpyCH4III	ACNGT	5 cut(s)	21, 379, 580, 638, 647
HpyCH4IV	ACGT	1 cut(s)	486
HpyCH4V	TGCA	1 cut(s)	490
HpyF10VI	GCNNNNNNNGC	2 cut(s)	302, 679
HpyF3I	CTNAG	2 cut(s)	515, 593
HpySE526I	ACGT	1 cut(s)	486
Hsp92II	CATG	4 cut(s)	191, 322, 494, 677
HspAI	GCGC	1 cut(s)	245
Ksp22I	TGATCA	2 cut(s)	184, 366
Kzo9I	GATC	8 cut(s)	184, 251, 348, 366, 450, 511, 702, 708
LmnI	GCTCC	1 cut(s)	546
LpnPI	CCDG	4 cut(s)	203, 208, 288, 699
Lsp1109I	GCAGC	1 cut(s)	289
LweI	GCATC	2 cut(s)	169, 574
MaeI	CTAG	2 cut(s)	248, 326
MaeII	ACGT	1 cut(s)	486
MaeIII	GTNAC	4 cut(s)	373, 580, 655, 688
MalI	GATC	8 cut(s)	186, 253, 350, 368, 452, 513, 704, 710
MboI	GATC	8 cut(s)	184, 251, 348, 366, 450, 511, 702, 708
MboII	GAAGA	8 cut(s)	51, 403, 431, 437, 518, 521, 586, 712
MflI	RGATCY	1 cut(s)	511
MluCI	AATT	6 cut(s)	85, 93, 108, 150, 209, 536
MlyI	GAGTC	4 cut(s)	50, 353, 526, 598
MmeI	TCCRAC	2 cut(s)	380, 597
MnlI	CCTC	8 cut(s)	21, 24, 378, 403, 415, 421, 424, 564
MspI	CCGG	1 cut(s)	275
MwoI	GCNNNNNNNGC	2 cut(s)	302, 679
NdeI	CATATG	1 cut(s)	298
NdeII	GATC	8 cut(s)	184, 251, 348, 366, 450, 511, 702, 708
NlaIII	CATG	4 cut(s)	191, 322, 494, 677
NlaIV	GGNNCC	1 cut(s)	666
NmeAIII	GCCGAG	1 cut(s)	408
NmuCI	GTSAC	4 cut(s)	373, 580, 655, 688
NspI	RCATGY	2 cut(s)	494, 677
NspV	TTCGAA	1 cut(s)	106
PagI	TCATGA	1 cut(s)	187
PfeI	GAWTC	2 cut(s)	287, 442
PkrI	GCNGC	3 cut(s)	304, 307, 564
PleI	GAGTC	4 cut(s)	50, 353, 525, 597
PpsI	GAGTC	4 cut(s)	50, 353, 525, 597
PspN4I	GGNNCC	1 cut(s)	666
PsuI	RGATCY	1 cut(s)	511
SalI	GTCGAC	1 cut(s)	519
SatI	GCNGC	3 cut(s)	303, 306, 563
Sau3AI	GATC	8 cut(s)	184, 251, 348, 366, 450, 511, 702, 708
SchI	GAGTC	4 cut(s)	50, 353, 526, 598
SetI	ASST	6 cut(s)	327, 435, 489, 551, 657, 688
SfaNI	GCATC	2 cut(s)	169, 574
SfcI	CTRYAG	1 cut(s)	201
SfuI	TTCGAA	1 cut(s)	106
Sse9I	AATT	6 cut(s)	85, 93, 108, 150, 209, 536
SsiI	CCGC	4 cut(s)	305, 464, 542, 563
SspMI	CTAG	2 cut(s)	248, 326
TaaI	ACNGT	5 cut(s)	21, 379, 580, 638, 647
TaiI	ACGT	1 cut(s)	489
TaqI	TCGA	5 cut(s)	106, 453, 483, 520, 711
TasI	AATT	6 cut(s)	85, 93, 108, 150, 209, 536
TauI	GCSGC	2 cut(s)	308, 565
TfiI	GAWTC	2 cut(s)	287, 442
TscAI	CASTG	2 cut(s)	247, 382
TseFI	GTSAC	4 cut(s)	373, 580, 655, 688
TseI	GCWGC	1 cut(s)	302
Tsp45I	GTSAC	4 cut(s)	373, 580, 655, 688
TspDTI	ATGAA	1 cut(s)	335
TspGWI	ACGGA	1 cut(s)	623
TspRI	CASTG	2 cut(s)	247, 382
XapI	RAATTY	5 cut(s)	85, 93, 108, 209, 536
XceI	RCATGY	2 cut(s)	494, 677
XmiI	GTMKAC	2 cut(s)	204, 520
XspI	CTAG	2 cut(s)	248, 326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.