Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005180

Physical Location & Seq

Genomic Coordinates Forward (+)

89800181 .. 89800909

Gene Structure 729 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00068690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGCTTCTCCTCCTTCACCGTCCTTGCCCACACCAAATCGCTCAACCCTACACGACTCTTCAATCTCTCCCATCTTTCAAAAAAATTCACGAATTTCCTTGCTTCGAATTCCCAACCCTCGCTCTGTATTTAGAGTTCATGTCAAACCAATTACAAATACAAATAGTAATCAAAATGATGCTGATCATGAGCAACGCTCTGTAGACAAATTCAAACTGGTCAGGAGAAACTTGCTATTCAGTGCGCTAGGATCAAAGATGAGTGAAATACCACCGGCTTTTAGTGAATCCGAAGCATATGCTGCGGCTGAGTCAACACCCATGAAGCTAGTAGAACTCACTGAGTTCCCGATCACTTTGGACTCGGTGATCAGCGTCACTGTGCCGAGGCCGAAGAAGTGTCGGACAAAGGAGGAAAAGGAAGAGGAAGAGGAGGTGTTAGCAATTCAAGGGATTGAGTTTGTGGCGGATGAGTTTGTGAAGTTCGACCTGCATGTCAACGATGACGAAGAAGATCTGAGTCGACCCGATAACTCGGAATTTGCGGGGAGCTTTGTGTATTTGCCGCATCGGAGGAAGACCGTGACGACGAGTCTTAGGCTTGGGATAACGGACTTGTTGGACGATTTGGGTGCTGACGGTGATGACAGTATCAAGGTGACTTTGGTGCCAAAGCATGTGAAACGACCTGTCACTATTGGGAAGATCAAGATCGAGTTTCTCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00350 ko00950 ko01100 ko01110 map00350 map00950 map01100 map01110

Pfam Domains

Protein Families

PPO1_DWL PPO1_KFDV Tyrosinase

Protein Analysis

242

Amino Acids

27.13

Weight (kDa)

5.92

Isoelectric Point (pI)

57.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPO1_KFDV	PF12143	116 - 240	2e-46	Chloroplastic Polyphenol Oxidase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005180)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g04681 FvH4_3g04690
malus_domestica	MD10G1298200.v1.1
prunus_persica	Prupe.4G042000_v2.0.a1 Prupe.4G042100_v2.0.a1
pyrus_communis	pycom10g25130
rosa_chinensis	RchiOBHm_Chr5g0007721 RchiOBHm_Chr5g0007731
rosa_laevigata	RLG00000014973 RLG00000014974 RLG00000031481 RLG00000031482
rosa_multiflora	Rmu_sc0005098.1_g000022 Rmu_sc0005098.1_g000023
rosa_roxburghii	Rroxscaffold_1G00068680 Rroxscaffold_1G00068690
rosa_rugosa	Rorug04G0429700 Rorug04G0429800
rosa_samantha	Rh3AG210400 Rh5AG058100 Rh5AG058200 Rh5BG054700 Rh5BG054900 Rh5CG064600 Rh5CG064700 Rh5CG482400 Rh5DG053900 Rh5DG054000
rosa_wichuraiana	Rw5G006150 Rw5G006160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	494
Acc36I	ACCTGC	1 cut(s)	498
AccB1I	GGYRCC	1 cut(s)	667
AccI	GTMKAC	2 cut(s)	204, 523
AciI	CCGC	4 cut(s)	305, 467, 545, 566
AclWI	GGATC	1 cut(s)	259
AcsI	RAATTY	5 cut(s)	85, 93, 108, 209, 539
AgsI	TTSAA	4 cut(s)	63, 80, 214, 449
AhdI	GACNNNNNGTC	1 cut(s)	591
AluBI	AGCT	2 cut(s)	328, 552
AluI	AGCT	2 cut(s)	328, 552
AlwI	GGATC	1 cut(s)	259
AoxI	GGCC	1 cut(s)	389
ApeKI	GCWGC	1 cut(s)	302
ApoI	RAATTY	5 cut(s)	85, 93, 108, 209, 539
AspLEI	GCGC	1 cut(s)	247
AsuHPI	GGTGA	4 cut(s)	9, 379, 653, 670
AsuII	TTCGAA	1 cut(s)	106
BanI	GGYRCC	1 cut(s)	667
BbsI	GAAGAC	1 cut(s)	584
BbvI	GCAGC	1 cut(s)	289
BccI	CCATC	1 cut(s)	80
BcgI	CGANNNNNNTGC	4 cut(s)	281, 315, 614, 648
BclI	TGATCA	2 cut(s)	184, 369
BfaI	CTAG	2 cut(s)	248, 329
BfmI	CTRYAG	1 cut(s)	201
BfuAI	ACCTGC	1 cut(s)	498
BglII	AGATCT	1 cut(s)	514
BisI	GCNGC	3 cut(s)	303, 306, 566
BlsI	GCNGC	3 cut(s)	304, 307, 567
BmeRI	GACNNNNNGTC	1 cut(s)	591
BmiI	GGNNCC	1 cut(s)	669
BmsI	GCATC	2 cut(s)	169, 577
BpiI	GAAGAC	1 cut(s)	584
BplI	GAGNNNNNCTC	2 cut(s)	182, 214
Bpu14I	TTCGAA	1 cut(s)	106
BsaBI	GATNNNNATC	2 cut(s)	183, 710
BsaJI	CCNNGG	1 cut(s)	386
Bse118I	RCCGGY	1 cut(s)	274
Bse1I	ACTGG	1 cut(s)	222
Bse8I	GATNNNNATC	2 cut(s)	183, 710
BseDI	CCNNGG	1 cut(s)	386
BseGI	GGATG	1 cut(s)	475
BseJI	GATNNNNATC	2 cut(s)	183, 710
BseMII	CTCAG	3 cut(s)	300, 333, 509
BseNI	ACTGG	1 cut(s)	222
BseRI	GAGGAG	1 cut(s)	446
BseXI	GCAGC	1 cut(s)	289
BshFI	GGCC	1 cut(s)	391
BshNI	GGYRCC	1 cut(s)	667
BsiSI	CCGG	1 cut(s)	275
BsnI	GGCC	1 cut(s)	391
Bsp119I	TTCGAA	1 cut(s)	106
Bsp143I	GATC	7 cut(s)	184, 251, 351, 369, 514, 705, 711
BspACI	CCGC	4 cut(s)	305, 467, 545, 566
BspANI	GGCC	1 cut(s)	391
BspCNI	CTCAG	3 cut(s)	301, 334, 510
BspHI	TCATGA	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	669
BspMI	ACCTGC	1 cut(s)	498
BspPI	GGATC	1 cut(s)	259
BspT104I	TTCGAA	1 cut(s)	106
BspT107I	GGYRCC	1 cut(s)	667
BsrFI	RCCGGY	1 cut(s)	274
BsrI	ACTGG	1 cut(s)	222
BssAI	RCCGGY	1 cut(s)	274
BssECI	CCNNGG	1 cut(s)	386
BssMI	GATC	7 cut(s)	184, 251, 351, 369, 514, 705, 711
Bst4CI	ACNGT	5 cut(s)	21, 382, 583, 641, 650
Bst6I	CTCTTC	3 cut(s)	64, 417, 423
BstAPI	GCANNNNNTGC	1 cut(s)	302
BstBI	TTCGAA	1 cut(s)	106
BstDEI	CTNAG	4 cut(s)	309, 342, 518, 596
BstF5I	GGATG	1 cut(s)	475
BstHHI	GCGC	1 cut(s)	247
BstKTI	GATC	7 cut(s)	187, 254, 354, 372, 517, 708, 714
BstMBI	GATC	7 cut(s)	184, 251, 351, 369, 514, 705, 711
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstNSI	RCATGY	2 cut(s)	497, 680
BstSFI	CTRYAG	1 cut(s)	201
BstV1I	GCAGC	1 cut(s)	289
BstV2I	GAAGAC	1 cut(s)	584
BstX2I	RGATCY	1 cut(s)	514
BstYI	RGATCY	1 cut(s)	514
BsuRI	GGCC	1 cut(s)	391
BtsCI	GGATG	1 cut(s)	475
BtsIMutI	CAGTG	3 cut(s)	247, 339, 378
BveI	ACCTGC	1 cut(s)	498
CciI	TCATGA	1 cut(s)	187
CfoI	GCGC	1 cut(s)	247
Cfr10I	RCCGGY	1 cut(s)	274
CseI	GACGC	1 cut(s)	364
CviAII	CATG	5 cut(s)	140, 188, 322, 494, 677
CviJI	RGCY	7 cut(s)	5, 278, 308, 328, 391, 552, 601
CviKI_1	RGCY	7 cut(s)	5, 278, 308, 328, 391, 552, 601
DdeI	CTNAG	4 cut(s)	309, 342, 518, 596
DpnI	GATC	7 cut(s)	186, 253, 353, 371, 516, 707, 713
DpnII	GATC	7 cut(s)	184, 251, 351, 369, 514, 705, 711
DrdI	GACNNNNNNGTC	1 cut(s)	494
DriI	GACNNNNNGTC	1 cut(s)	591
DseDI	GACNNNNNNGTC	1 cut(s)	494
Eam1104I	CTCTTC	3 cut(s)	64, 417, 423
Eam1105I	GACNNNNNGTC	1 cut(s)	591
EarI	CTCTTC	3 cut(s)	64, 417, 423
EciI	GGCGGA	1 cut(s)	482
EcoRI	GAATTC	1 cut(s)	108
FaeI	CATG	5 cut(s)	143, 191, 325, 497, 680
FaiI	YATR	7 cut(s)	141, 189, 298, 300, 323, 495, 678
FatI	CATG	5 cut(s)	139, 187, 321, 493, 676
FauI	CCCGC	1 cut(s)	538
FauNDI	CATATG	1 cut(s)	298
FbaI	TGATCA	2 cut(s)	184, 369
FblI	GTMKAC	2 cut(s)	204, 523
Fnu4HI	GCNGC	3 cut(s)	303, 306, 566
FokI	GGATG	1 cut(s)	482
Fsp4HI	GCNGC	3 cut(s)	303, 306, 566
FspBI	CTAG	2 cut(s)	248, 329
GlaI	GCGC	1 cut(s)	246
GluI	GCNGC	3 cut(s)	303, 306, 566
HaeIII	GGCC	1 cut(s)	391
HapII	CCGG	1 cut(s)	275
HgaI	GACGC	1 cut(s)	364
HhaI	GCGC	1 cut(s)	247
Hin1II	CATG	5 cut(s)	143, 191, 325, 497, 680
Hin6I	GCGC	1 cut(s)	245
HinP1I	GCGC	1 cut(s)	245
HincII	GTYRAC	3 cut(s)	315, 499, 524
HindII	GTYRAC	3 cut(s)	315, 499, 524
HinfI	GANTC	6 cut(s)	56, 287, 311, 362, 520, 592
HpaII	CCGG	1 cut(s)	275
HphI	GGTGA	4 cut(s)	9, 379, 653, 670
Hpy166II	GTNNAC	4 cut(s)	205, 315, 499, 524
Hpy188I	TCNGA	5 cut(s)	292, 405, 519, 538, 573
Hpy188III	TCNNGA	5 cut(s)	90, 188, 223, 349, 709
Hpy8I	GTNNAC	4 cut(s)	205, 315, 499, 524
Hpy99I	CGWCG	1 cut(s)	592
HpyAV	CCTTC	1 cut(s)	24
HpyCH4III	ACNGT	5 cut(s)	21, 382, 583, 641, 650
HpyCH4V	TGCA	1 cut(s)	493
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
HpyF3I	CTNAG	4 cut(s)	309, 342, 518, 596
Hsp92II	CATG	5 cut(s)	143, 191, 325, 497, 680
HspAI	GCGC	1 cut(s)	245
Ksp22I	TGATCA	2 cut(s)	184, 369
Kzo9I	GATC	7 cut(s)	184, 251, 351, 369, 514, 705, 711
LmnI	GCTCC	1 cut(s)	549
LpnPI	CCDG	5 cut(s)	203, 208, 288, 503, 702
Lsp1109I	GCAGC	1 cut(s)	289
LweI	GCATC	2 cut(s)	169, 577
MaeI	CTAG	2 cut(s)	248, 329
MaeIII	GTNAC	4 cut(s)	376, 583, 658, 691
MalI	GATC	7 cut(s)	186, 253, 353, 371, 516, 707, 713
MboI	GATC	7 cut(s)	184, 251, 351, 369, 514, 705, 711
MboII	GAAGA	8 cut(s)	51, 406, 434, 440, 521, 524, 589, 715
MflI	RGATCY	1 cut(s)	514
MluCI	AATT	7 cut(s)	85, 93, 108, 150, 209, 444, 539
MlyI	GAGTC	5 cut(s)	50, 320, 356, 529, 601
MmeI	TCCRAC	2 cut(s)	383, 600
MnlI	CCTC	8 cut(s)	21, 129, 381, 406, 418, 424, 427, 567
MspI	CCGG	1 cut(s)	275
MwoI	GCNNNNNNNGC	1 cut(s)	302
NdeI	CATATG	1 cut(s)	298
NdeII	GATC	7 cut(s)	184, 251, 351, 369, 514, 705, 711
NlaIII	CATG	5 cut(s)	143, 191, 325, 497, 680
NlaIV	GGNNCC	1 cut(s)	669
NmeAIII	GCCGAG	1 cut(s)	411
NmuCI	GTSAC	4 cut(s)	376, 583, 658, 691
NspI	RCATGY	2 cut(s)	497, 680
NspV	TTCGAA	1 cut(s)	106
PagI	TCATGA	1 cut(s)	187
PfeI	GAWTC	1 cut(s)	287
PkrI	GCNGC	3 cut(s)	304, 307, 567
PleI	GAGTC	5 cut(s)	50, 319, 356, 528, 600
PpsI	GAGTC	5 cut(s)	50, 319, 356, 528, 600
PspN4I	GGNNCC	1 cut(s)	669
PsrI	GAACNNNNNNTAC	2 cut(s)	120, 152
PsuI	RGATCY	1 cut(s)	514
SalI	GTCGAC	1 cut(s)	522
SatI	GCNGC	3 cut(s)	303, 306, 566
Sau3AI	GATC	7 cut(s)	184, 251, 351, 369, 514, 705, 711
SchI	GAGTC	5 cut(s)	50, 320, 356, 529, 601
SetI	ASST	6 cut(s)	330, 438, 492, 554, 660, 691
SfaNI	GCATC	2 cut(s)	169, 577
SfcI	CTRYAG	1 cut(s)	201
SfuI	TTCGAA	1 cut(s)	106
Sse9I	AATT	7 cut(s)	85, 93, 108, 150, 209, 444, 539
SsiI	CCGC	4 cut(s)	305, 467, 545, 566
SspMI	CTAG	2 cut(s)	248, 329
TaaI	ACNGT	5 cut(s)	21, 382, 583, 641, 650
TaqI	TCGA	4 cut(s)	106, 486, 523, 714
TasI	AATT	7 cut(s)	85, 93, 108, 150, 209, 444, 539
TauI	GCSGC	2 cut(s)	308, 568
TfiI	GAWTC	1 cut(s)	287
TscAI	CASTG	3 cut(s)	247, 346, 385
TseFI	GTSAC	4 cut(s)	376, 583, 658, 691
TseI	GCWGC	1 cut(s)	302
Tsp45I	GTSAC	4 cut(s)	376, 583, 658, 691
TspDTI	ATGAA	2 cut(s)	128, 338
TspGWI	ACGGA	1 cut(s)	626
TspRI	CASTG	3 cut(s)	247, 346, 385
XapI	RAATTY	5 cut(s)	85, 93, 108, 209, 539
XceI	RCATGY	2 cut(s)	497, 680
XmiI	GTMKAC	2 cut(s)	204, 523
XspI	CTAG	2 cut(s)	248, 329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.