Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0005180

Physical Location & Seq

Genomic Coordinates Forward (+)

26785563 .. 26786397

Gene Structure 835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g25130.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGCTTCTTCTCTTCCACTATCATCCAACACCAAGATTACCACTTGCGCCATCGCCCCTTCACTCCCTCACATCTTCCCAAACAAATCCCAGATCTCCTTAGTCAGAAATCTTAGAGGTTCATGTAAAGCAACAACAATCAACAGTGACCAAAACCTTAATCAAGATCCGCAAACTTGTCTGGTAAAATTGGATAGGAGAAATCTTCTCCTTGGTCTTGGAGGACTTGCCTTGGGGACTCATAACCTAACAAGGCCAGCAAACGCGGCAGAGGCGTCAAAAAAGGTAGTTTTGGTGGGGAGTAGTGAGTTGCCAATAGTTTTGGACTCTGTGGTGAGCGTGATCGTGCCGCGGCCGAGGAGGTCGAGGAGCAAGAAGGACAAGGAGGAGGAAGAGGAGGTGTTGGCGATTGAAGGGATTGAGTTTGTGGCAGACAAGGTGCTCAAGTTCGACGTGCATGTGAACGATGATGAGGACTCGCTGAGTCGACCTGACAAGTCCGAGTTTGCAGGGAGCTTGGTGTTTTTGCCACAGTCCAAGAAAAAGGTTAAAACCAGCCTGCATCTTGGGATTTCGGACTTGCTGGAGGACTTGGGAGCTGACGATGATGGCAGTATCAAGGTAACTTTGGTGCCAAGGAATGTCCAGCGACCTGTCACCATTGGTCGGATCAGGATCGAATATTTTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00350 ko00950 ko01100 ko01110 map00350 map00950 map01100 map01110

Pfam Domains

Protein Families

PPO1_DWL PPO1_KFDV Tyrosinase

Protein Analysis

231

Amino Acids

25.05

Weight (kDa)

8.4

Isoelectric Point (pI)

56.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005180)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g04681 FvH4_3g04690
malus_domestica	MD10G1298200.v1.1
prunus_persica	Prupe.4G042000_v2.0.a1 Prupe.4G042100_v2.0.a1
pyrus_communis	pycom10g25130
rosa_chinensis	RchiOBHm_Chr5g0007721 RchiOBHm_Chr5g0007731
rosa_laevigata	RLG00000014973 RLG00000014974 RLG00000031481 RLG00000031482
rosa_multiflora	Rmu_sc0005098.1_g000022 Rmu_sc0005098.1_g000023
rosa_roxburghii	Rroxscaffold_1G00068680 Rroxscaffold_1G00068690
rosa_rugosa	Rorug04G0429700 Rorug04G0429800
rosa_samantha	Rh3AG210400 Rh5AG058100 Rh5AG058200 Rh5BG054700 Rh5BG054900 Rh5CG064600 Rh5CG064700 Rh5CG482400 Rh5DG053900 Rh5DG054000
rosa_wichuraiana	Rw5G006150 Rw5G006160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	631
AccI	GTMKAC	1 cut(s)	487
AccII	CGCG	2 cut(s)	266, 352
AciI	CCGC	4 cut(s)	170, 266, 350, 352
AclWI	GGATC	3 cut(s)	161, 677, 683
AcoI	YGGCCR	1 cut(s)	353
AcyI	GRCGYC	1 cut(s)	275
AfiI	CCNNNNNNNGG	1 cut(s)	666
AgsI	TTSAA	1 cut(s)	413
AjiI	CACGTC	1 cut(s)	454
AluBI	AGCT	2 cut(s)	516, 599
AluI	AGCT	2 cut(s)	516, 599
Alw21I	GWGCWC	1 cut(s)	444
AlwI	GGATC	3 cut(s)	161, 677, 683
AoxI	GGCC	2 cut(s)	254, 353
AspLEI	GCGC	1 cut(s)	50
AsuHPI	GGTGA	2 cut(s)	346, 649
BanI	GGYRCC	1 cut(s)	631
Bbv12I	GWGCWC	1 cut(s)	444
BccI	CCATC	2 cut(s)	59, 602
BcgI	CGANNNNNNTGC	1 cut(s)	668
BfaI	CTAG	1 cut(s)	691
BglII	AGATCT	1 cut(s)	93
BisI	GCNGC	3 cut(s)	267, 350, 353
BlsI	GCNGC	3 cut(s)	268, 351, 354
BmgBI	CACGTC	1 cut(s)	454
BmiI	GGNNCC	1 cut(s)	633
BmsI	GCATC	1 cut(s)	571
BpmI	CTGGAG	1 cut(s)	605
BpuEI	CTTGAG	1 cut(s)	428
BsaBI	GATNNNNATC	1 cut(s)	674
BsaHI	GRCGYC	1 cut(s)	275
BsaJI	CCNNGG	5 cut(s)	211, 231, 350, 356, 635
Bsc4I	CCNNNNNNNGG	1 cut(s)	666
Bse8I	GATNNNNATC	1 cut(s)	674
BseDI	CCNNGG	5 cut(s)	211, 231, 350, 356, 635
BseGI	GGATG	1 cut(s)	23
BseJI	GATNNNNATC	1 cut(s)	674
BseLI	CCNNNNNNNGG	1 cut(s)	666
BseMII	CTCAG	1 cut(s)	473
BseRI	GAGGAG	4 cut(s)	373, 382, 401, 410
BseX3I	CGGCCG	1 cut(s)	353
Bsh1236I	CGCG	2 cut(s)	266, 352
Bsh1285I	CGRYCG	1 cut(s)	356
BshFI	GGCC	2 cut(s)	256, 355
BshNI	GGYRCC	1 cut(s)	631
BsiEI	CGRYCG	1 cut(s)	356
BsiHKAI	GWGCWC	1 cut(s)	444
BslFI	GGGAC	1 cut(s)	250
BslI	CCNNNNNNNGG	1 cut(s)	666
BsmFI	GGGAC	1 cut(s)	250
BsnI	GGCC	2 cut(s)	256, 355
Bsp1286I	GDGCHC	1 cut(s)	444
Bsp143I	GATC	5 cut(s)	93, 166, 342, 669, 675
BspACI	CCGC	4 cut(s)	170, 266, 350, 352
BspANI	GGCC	2 cut(s)	256, 355
BspCNI	CTCAG	1 cut(s)	474
BspFNI	CGCG	2 cut(s)	266, 352
BspLI	GGNNCC	1 cut(s)	633
BspPI	GGATC	3 cut(s)	161, 677, 683
BspT107I	GGYRCC	1 cut(s)	631
BssECI	CCNNGG	5 cut(s)	211, 231, 350, 356, 635
BssMI	GATC	5 cut(s)	93, 166, 342, 669, 675
BssNI	GRCGYC	1 cut(s)	275
BssT1I	CCWWGG	3 cut(s)	211, 231, 635
Bst4CI	ACNGT	2 cut(s)	146, 534
Bst6I	CTCTTC	2 cut(s)	18, 387
BstACI	GRCGYC	1 cut(s)	275
BstC8I	GCNNGC	2 cut(s)	258, 560
BstDEI	CTNAG	3 cut(s)	100, 113, 482
BstDSI	CCRYGG	1 cut(s)	350
BstF5I	GGATG	1 cut(s)	23
BstFNI	CGCG	2 cut(s)	266, 352
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	5 cut(s)	96, 169, 345, 672, 678
BstMBI	GATC	5 cut(s)	93, 166, 342, 669, 675
BstMCI	CGRYCG	1 cut(s)	356
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 272
BstNSI	RCATGY	1 cut(s)	461
BstUI	CGCG	2 cut(s)	266, 352
BstX2I	RGATCY	2 cut(s)	93, 166
BstYI	RGATCY	2 cut(s)	93, 166
BstZI	CGGCCG	1 cut(s)	353
BsuRI	GGCC	2 cut(s)	256, 355
BtgI	CCRYGG	1 cut(s)	350
BtgZI	GCGATG	1 cut(s)	37
BtrI	CACGTC	1 cut(s)	454
BtsCI	GGATG	1 cut(s)	23
BtsIMutI	CAGTG	1 cut(s)	151
Cac8I	GCNNGC	2 cut(s)	258, 560
CfoI	GCGC	1 cut(s)	50
Cfr42I	CCGCGG	1 cut(s)	353
CseI	GACGC	1 cut(s)	264
CviAII	CATG	2 cut(s)	123, 458
CviJI	RGCY	6 cut(s)	5, 256, 355, 516, 558, 599
CviKI_1	RGCY	6 cut(s)	5, 256, 355, 516, 558, 599
DdeI	CTNAG	3 cut(s)	100, 113, 482
DpnI	GATC	5 cut(s)	95, 168, 344, 671, 677
DpnII	GATC	5 cut(s)	93, 166, 342, 669, 675
EaeI	YGGCCR	1 cut(s)	353
EagI	CGGCCG	1 cut(s)	353
Eam1104I	CTCTTC	2 cut(s)	18, 387
EarI	CTCTTC	2 cut(s)	18, 387
EclXI	CGGCCG	1 cut(s)	353
Eco130I	CCWWGG	3 cut(s)	211, 231, 635
Eco52I	CGGCCG	1 cut(s)	353
EcoT14I	CCWWGG	3 cut(s)	211, 231, 635
ErhI	CCWWGG	3 cut(s)	211, 231, 635
FaeI	CATG	2 cut(s)	126, 461
FaiI	YATR	3 cut(s)	124, 243, 459
FaqI	GGGAC	1 cut(s)	250
FatI	CATG	2 cut(s)	122, 457
FblI	GTMKAC	1 cut(s)	487
Fnu4HI	GCNGC	3 cut(s)	267, 350, 353
FokI	GGATG	1 cut(s)	10
Fsp4HI	GCNGC	3 cut(s)	267, 350, 353
FspBI	CTAG	1 cut(s)	691
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	3 cut(s)	267, 350, 353
GsuI	CTGGAG	1 cut(s)	605
HaeIII	GGCC	2 cut(s)	256, 355
HgaI	GACGC	1 cut(s)	264
HhaI	GCGC	1 cut(s)	50
Hin1I	GRCGYC	1 cut(s)	275
Hin1II	CATG	2 cut(s)	126, 461
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HincII	GTYRAC	1 cut(s)	488
HindII	GTYRAC	1 cut(s)	488
HinfI	GANTC	4 cut(s)	238, 326, 476, 484
HphI	GGTGA	2 cut(s)	346, 649
Hpy166II	GTNNAC	2 cut(s)	463, 488
Hpy188I	TCNGA	4 cut(s)	107, 502, 577, 669
Hpy188III	TCNNGA	2 cut(s)	164, 673
Hpy8I	GTNNAC	2 cut(s)	463, 488
Hpy99I	CGWCG	1 cut(s)	455
HpyAV	CCTTC	3 cut(s)	69, 370, 407
HpyCH4III	ACNGT	2 cut(s)	146, 534
HpyCH4IV	ACGT	1 cut(s)	453
HpyCH4V	TGCA	3 cut(s)	457, 509, 562
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 272
HpyF3I	CTNAG	3 cut(s)	100, 113, 482
HpySE526I	ACGT	1 cut(s)	453
Hsp92I	GRCGYC	1 cut(s)	275
Hsp92II	CATG	2 cut(s)	126, 461
HspAI	GCGC	1 cut(s)	48
KspI	CCGCGG	1 cut(s)	353
Kzo9I	GATC	5 cut(s)	93, 166, 342, 669, 675
LmnI	GCTCC	3 cut(s)	369, 513, 596
LweI	GCATC	1 cut(s)	571
MaeI	CTAG	1 cut(s)	691
MaeII	ACGT	1 cut(s)	453
MaeIII	GTNAC	3 cut(s)	146, 622, 655
MalI	GATC	5 cut(s)	95, 168, 344, 671, 677
MboI	GATC	5 cut(s)	93, 166, 342, 669, 675
MboII	GAAGA	4 cut(s)	5, 67, 197, 404
MflI	RGATCY	2 cut(s)	93, 166
MhlI	GDGCHC	1 cut(s)	444
MluCI	AATT	1 cut(s)	188
MlyI	GAGTC	4 cut(s)	232, 320, 470, 493
MmeI	TCCRAC	2 cut(s)	51, 647
MseI	TTAA	2 cut(s)	159, 549
MspA1I	CMGCKG	1 cut(s)	352
MvnI	CGCG	2 cut(s)	266, 352
MwoI	GCNNNNNNNGC	2 cut(s)	266, 272
NdeII	GATC	5 cut(s)	93, 166, 342, 669, 675
NlaIII	CATG	2 cut(s)	126, 461
NlaIV	GGNNCC	1 cut(s)	633
NmeAIII	GCCGAG	1 cut(s)	381
NmuCI	GTSAC	2 cut(s)	146, 655
NspI	RCATGY	1 cut(s)	461
PkrI	GCNGC	3 cut(s)	268, 351, 354
PleI	GAGTC	4 cut(s)	232, 320, 470, 492
PpsI	GAGTC	4 cut(s)	232, 320, 470, 492
PspN4I	GGNNCC	1 cut(s)	633
PsuI	RGATCY	2 cut(s)	93, 166
SacII	CCGCGG	1 cut(s)	353
SalI	GTCGAC	1 cut(s)	486
SaqAI	TTAA	2 cut(s)	159, 549
SatI	GCNGC	3 cut(s)	267, 350, 353
Sau3AI	GATC	5 cut(s)	93, 166, 342, 669, 675
SchI	GAGTC	4 cut(s)	232, 320, 470, 493
SduI	GDGCHC	1 cut(s)	444
SfaNI	GCATC	1 cut(s)	571
Sfr303I	CCGCGG	1 cut(s)	353
SgrBI	CCGCGG	1 cut(s)	353
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	1 cut(s)	188
SsiI	CCGC	4 cut(s)	170, 266, 350, 352
SspI	AATATT	1 cut(s)	683
SspMI	CTAG	1 cut(s)	691
StyI	CCWWGG	3 cut(s)	211, 231, 635
TaaI	ACNGT	2 cut(s)	146, 534
TaiI	ACGT	1 cut(s)	456
TaqI	TCGA	4 cut(s)	365, 450, 487, 678
TasI	AATT	1 cut(s)	188
TauI	GCSGC	3 cut(s)	269, 352, 355
Tru1I	TTAA	2 cut(s)	159, 549
Tru9I	TTAA	2 cut(s)	159, 549
TscAI	CASTG	1 cut(s)	151
TseFI	GTSAC	2 cut(s)	146, 655
Tsp45I	GTSAC	2 cut(s)	146, 655
TspDTI	ATGAA	1 cut(s)	111
TspRI	CASTG	1 cut(s)	151
XceI	RCATGY	1 cut(s)	461
XmiI	GTMKAC	1 cut(s)	487
XspI	CTAG	1 cut(s)	691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.