Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0005180

Physical Location & Seq

Genomic Coordinates Forward (+)

6327051 .. 6327692

Gene Structure 642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G006150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGTCTATGAATTTGATTCCCCATTACTCAATCCCGTCAATCTGTTACTCATTTCCAAACAGAACCCTTGTTTCTTCAGTCCAAAATCGTGCTAGAGCTACACTCAACAGTGATCAAAATCTTGGCAACCACCAAGTTTCTGTACTAAAATTCGATAGGAGAAATGTGCTTCTGGGTTTGGGAGGGATAATCTTGCTGGTTCGACTCACTGAGTTCCCAACAGCTTTAGACTCGGTGATCAGTGTCATGGTGCCGAGGCCGAGGAGGTCGAGGAGCAAGAAAGAAAAGGAAGAGGAAGAGGAGGTGCTGTCGATCGAAGGCATTGAGTTCGTGGCGGATAAGGCTGTGAAGTTCGATGTGCATGTGAATGATGACGAGGACGATCTAAGTCGACCCGACGCGTCTGAATTTGCCGGAAGCTTGGTGTTCTTGCCGCAGAGCAGGAAGAGGGTGAAAACGAGTTTGCATTTGGGGATAACGGGCTTGTTGGAGGATTTGGGAGCTGATGGTGATAGTACTATTAAGGTGACTTTGGTGCCAAGGTATGTGCAACGACCTATCACCATTGGGAGGATCAAGATCGAGTATTTCAGTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00350 ko00950 ko01100 ko01110 map00350 map00950 map01100 map01110

Pfam Domains

Protein Families

PPO1_DWL PPO1_KFDV Tyrosinase

Protein Analysis

199

Amino Acids

22.25

Weight (kDa)

6.92

Isoelectric Point (pI)

54.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPO1_KFDV	PF12143	72 - 196	1.2e-44	Chloroplastic Polyphenol Oxidase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005180)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g04681 FvH4_3g04690
malus_domestica	MD10G1298200.v1.1
prunus_persica	Prupe.4G042000_v2.0.a1 Prupe.4G042100_v2.0.a1
pyrus_communis	pycom10g25130
rosa_chinensis	RchiOBHm_Chr5g0007721 RchiOBHm_Chr5g0007731
rosa_laevigata	RLG00000014973 RLG00000014974 RLG00000031481 RLG00000031482
rosa_multiflora	Rmu_sc0005098.1_g000022 Rmu_sc0005098.1_g000023
rosa_roxburghii	Rroxscaffold_1G00068680 Rroxscaffold_1G00068690
rosa_rugosa	Rorug04G0429700 Rorug04G0429800
rosa_samantha	Rh3AG210400 Rh5AG058100 Rh5AG058200 Rh5BG054700 Rh5BG054900 Rh5CG064600 Rh5CG064700 Rh5CG482400 Rh5DG053900 Rh5DG054000
rosa_wichuraiana	Rw5G006150 Rw5G006160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	250, 535
AccI	GTMKAC	1 cut(s)	391
AccII	CGCG	1 cut(s)	401
AciI	CCGC	2 cut(s)	335, 434
AclWI	GGATC	1 cut(s)	581
AcsI	RAATTY	3 cut(s)	10, 149, 407
AcuI	CTGAAG	1 cut(s)	60
AfaI	GTAC	2 cut(s)	144, 517
AfiI	CCNNNNNNNGG	1 cut(s)	570
AflIII	ACRYGT	1 cut(s)	399
AluBI	AGCT	4 cut(s)	98, 224, 420, 503
AluI	AGCT	4 cut(s)	98, 224, 420, 503
AlwI	GGATC	1 cut(s)	581
AoxI	GGCC	1 cut(s)	257
ApoI	RAATTY	3 cut(s)	10, 149, 407
AsuHPI	GGTGA	5 cut(s)	247, 463, 521, 538, 553
BanI	GGYRCC	2 cut(s)	250, 535
BccI	CCATC	1 cut(s)	500
BcgI	CGANNNNNNTGC	2 cut(s)	310, 344
BclI	TGATCA	2 cut(s)	112, 237
BfaI	CTAG	2 cut(s)	93, 598
BisI	GCNGC	1 cut(s)	434
BlsI	GCNGC	1 cut(s)	435
BmcAI	AGTACT	1 cut(s)	517
BmiI	GGNNCC	2 cut(s)	252, 537
BplI	GAGNNNNNCTC	2 cut(s)	87, 119
BsaBI	GATNNNNATC	2 cut(s)	117, 578
BsaJI	CCNNGG	3 cut(s)	254, 260, 539
BsaXI	ACNNNNNCTCC	2 cut(s)	293, 323
Bsc4I	CCNNNNNNNGG	1 cut(s)	570
Bse8I	GATNNNNATC	2 cut(s)	117, 578
BseDI	CCNNGG	3 cut(s)	254, 260, 539
BseJI	GATNNNNATC	2 cut(s)	117, 578
BseLI	CCNNNNNNNGG	1 cut(s)	570
BseMII	CTCAG	1 cut(s)	201
BseRI	GAGGAG	3 cut(s)	277, 286, 314
Bsh1236I	CGCG	1 cut(s)	401
Bsh1285I	CGRYCG	1 cut(s)	315
BshFI	GGCC	1 cut(s)	259
BshNI	GGYRCC	2 cut(s)	250, 535
BsiEI	CGRYCG	1 cut(s)	315
BsiSI	CCGG	1 cut(s)	414
BslI	CCNNNNNNNGG	1 cut(s)	570
BsnI	GGCC	1 cut(s)	259
Bsp143I	GATC	6 cut(s)	112, 237, 312, 382, 573, 579
BspACI	CCGC	2 cut(s)	335, 434
BspANI	GGCC	1 cut(s)	259
BspCNI	CTCAG	1 cut(s)	202
BspFNI	CGCG	1 cut(s)	401
BspLI	GGNNCC	2 cut(s)	252, 537
BspPI	GGATC	1 cut(s)	581
BspT107I	GGYRCC	2 cut(s)	250, 535
BssECI	CCNNGG	3 cut(s)	254, 260, 539
BssMI	GATC	6 cut(s)	112, 237, 312, 382, 573, 579
BssT1I	CCWWGG	1 cut(s)	539
Bst4CI	ACNGT	1 cut(s)	110
Bst6I	CTCTTC	3 cut(s)	285, 291, 440
BstDEI	CTNAG	2 cut(s)	210, 386
BstFNI	CGCG	1 cut(s)	401
BstKTI	GATC	6 cut(s)	115, 240, 315, 385, 576, 582
BstMBI	GATC	6 cut(s)	112, 237, 312, 382, 573, 579
BstMCI	CGRYCG	1 cut(s)	315
BstMWI	GCNNNNNNNGC	1 cut(s)	341
BstNSI	RCATGY	1 cut(s)	365
BstUI	CGCG	1 cut(s)	401
BsuRI	GGCC	1 cut(s)	259
BtsIMutI	CAGTG	4 cut(s)	115, 207, 247, 598
CseI	GACGC	2 cut(s)	390, 407
Csp6I	GTAC	2 cut(s)	143, 516
CviAII	CATG	2 cut(s)	247, 362
CviJI	RGCY	7 cut(s)	98, 224, 259, 344, 420, 483, 503
CviKI_1	RGCY	7 cut(s)	98, 224, 259, 344, 420, 483, 503
CviQI	GTAC	2 cut(s)	143, 516
DdeI	CTNAG	2 cut(s)	210, 386
DpnI	GATC	6 cut(s)	114, 239, 314, 384, 575, 581
DpnII	GATC	6 cut(s)	112, 237, 312, 382, 573, 579
Eam1104I	CTCTTC	3 cut(s)	285, 291, 440
EarI	CTCTTC	3 cut(s)	285, 291, 440
EciI	GGCGGA	1 cut(s)	350
Eco130I	CCWWGG	1 cut(s)	539
Eco57I	CTGAAG	1 cut(s)	60
EcoT14I	CCWWGG	1 cut(s)	539
ErhI	CCWWGG	1 cut(s)	539
FaeI	CATG	2 cut(s)	250, 365
FaiI	YATR	4 cut(s)	8, 248, 363, 546
FatI	CATG	2 cut(s)	246, 361
FbaI	TGATCA	2 cut(s)	112, 237
FblI	GTMKAC	1 cut(s)	391
Fnu4HI	GCNGC	1 cut(s)	434
Fsp4HI	GCNGC	1 cut(s)	434
FspBI	CTAG	2 cut(s)	93, 598
GluI	GCNGC	1 cut(s)	434
HaeIII	GGCC	1 cut(s)	259
HapII	CCGG	1 cut(s)	414
HgaI	GACGC	2 cut(s)	390, 407
Hin1II	CATG	2 cut(s)	250, 365
HincII	GTYRAC	1 cut(s)	392
HindII	GTYRAC	1 cut(s)	392
HindIII	AAGCTT	1 cut(s)	418
HinfI	GANTC	3 cut(s)	16, 204, 230
HpaII	CCGG	1 cut(s)	414
HphI	GGTGA	5 cut(s)	247, 463, 521, 538, 553
Hpy166II	GTNNAC	1 cut(s)	392
Hpy188I	TCNGA	1 cut(s)	406
Hpy188III	TCNNGA	1 cut(s)	577
Hpy8I	GTNNAC	1 cut(s)	392
Hpy99I	CGWCG	1 cut(s)	401
HpyAV	CCTTC	1 cut(s)	311
HpyCH4III	ACNGT	1 cut(s)	110
HpyCH4V	TGCA	3 cut(s)	361, 466, 550
HpyF10VI	GCNNNNNNNGC	1 cut(s)	341
HpyF3I	CTNAG	2 cut(s)	210, 386
Hsp92II	CATG	2 cut(s)	250, 365
Ksp22I	TGATCA	2 cut(s)	112, 237
Kzo9I	GATC	6 cut(s)	112, 237, 312, 382, 573, 579
LmnI	GCTCC	2 cut(s)	273, 500
LpnPI	CCDG	4 cut(s)	158, 182, 427, 427
MaeI	CTAG	2 cut(s)	93, 598
MaeIII	GTNAC	2 cut(s)	44, 526
MalI	GATC	6 cut(s)	114, 239, 314, 384, 575, 581
MboI	GATC	6 cut(s)	112, 237, 312, 382, 573, 579
MboII	GAAGA	4 cut(s)	66, 302, 308, 457
MluCI	AATT	3 cut(s)	10, 149, 407
MluI	ACGCGT	1 cut(s)	399
MlyI	GAGTC	2 cut(s)	198, 224
MmeI	TCCRAC	1 cut(s)	468
MseI	TTAA	1 cut(s)	522
MslI	CAYNNNNRTG	1 cut(s)	366
MspI	CCGG	1 cut(s)	414
MvnI	CGCG	1 cut(s)	401
MwoI	GCNNNNNNNGC	1 cut(s)	341
NdeII	GATC	6 cut(s)	112, 237, 312, 382, 573, 579
NlaIII	CATG	2 cut(s)	250, 365
NlaIV	GGNNCC	2 cut(s)	252, 537
NmeAIII	GCCGAG	2 cut(s)	279, 285
NmuCI	GTSAC	1 cut(s)	526
NspI	RCATGY	1 cut(s)	365
PfeI	GAWTC	1 cut(s)	16
PkrI	GCNGC	1 cut(s)	435
Ple19I	CGATCG	1 cut(s)	315
PleI	GAGTC	2 cut(s)	198, 224
PpsI	GAGTC	2 cut(s)	198, 224
PspN4I	GGNNCC	2 cut(s)	252, 537
PvuI	CGATCG	1 cut(s)	315
RsaI	GTAC	2 cut(s)	144, 517
RsaNI	GTAC	2 cut(s)	143, 516
RseI	CAYNNNNRTG	1 cut(s)	366
SalI	GTCGAC	1 cut(s)	390
SaqAI	TTAA	1 cut(s)	522
SatI	GCNGC	1 cut(s)	434
Sau3AI	GATC	6 cut(s)	112, 237, 312, 382, 573, 579
ScaI	AGTACT	1 cut(s)	517
SchI	GAGTC	2 cut(s)	198, 224
SetI	ASST	9 cut(s)	100, 226, 269, 306, 422, 505, 528, 545, 559
SmiMI	CAYNNNNRTG	1 cut(s)	366
Sse9I	AATT	3 cut(s)	10, 149, 407
SsiI	CCGC	2 cut(s)	335, 434
SspMI	CTAG	2 cut(s)	93, 598
StyI	CCWWGG	1 cut(s)	539
TaaI	ACNGT	1 cut(s)	110
TaqI	TCGA	8 cut(s)	153, 202, 269, 311, 315, 354, 391, 582
TasI	AATT	3 cut(s)	10, 149, 407
TatI	WGTACW	2 cut(s)	142, 515
TauI	GCSGC	1 cut(s)	436
TfiI	GAWTC	1 cut(s)	16
Tru1I	TTAA	1 cut(s)	522
Tru9I	TTAA	1 cut(s)	522
TscAI	CASTG	4 cut(s)	115, 214, 247, 598
TseFI	GTSAC	1 cut(s)	526
Tsp45I	GTSAC	1 cut(s)	526
TspDTI	ATGAA	1 cut(s)	23
TspRI	CASTG	4 cut(s)	115, 214, 247, 598
XapI	RAATTY	3 cut(s)	10, 149, 407
XceI	RCATGY	1 cut(s)	365
XmiI	GTMKAC	1 cut(s)	391
XspI	CTAG	2 cut(s)	93, 598
ZrmI	AGTACT	1 cut(s)	517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.