Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005098.1

Orthogroup ID

OG0005180

Physical Location & Seq

Genomic Coordinates Forward (+)

87730 .. 88371

Gene Structure 642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005098.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

atgtctatgaatttgattccccatttctcaatcccgtcaatctgttactcatttccaaacagaacccttgtttcttcagtccaaaatcgtgctagagctacactcaacagtgatcaaaatcttggcaaccaccaagtttctgtactaaaattcgataggagaaatgtgcttctgggtttgggagggataatcttggtcaatcatccaaacttagcacgcgcaaccgagtcaaagaagctggttcgactcactgagttcccgacagctttagactcggtgatcagtgtcatggtgccgaggccgaggaggtcgaggagcaagaaagaaaaggaagaggaagaggaggtgctgtcgatcgaaggcattgagttcgtggcggataaggctgtgaaattcgatgtgcatgtgaatgatgacgaggacgatctaagtcgacccgacgcgtctgaatttgccggaagcttggtgttcttgccgcagagcaggaagagggtgaaaacgagtttgcatttggggataacgggcttgttggaggatttgggagctgatggtgatagtagtattaaggtgactttggtgccaaggtatgtgcaacgacctatcaccattgggaggatcaagatcgagtatttcagtgcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00350 ko00950 ko01100 ko01110 map00350 map00950 map01100 map01110

Pfam Domains

Protein Families

PPO1_DWL PPO1_KFDV Tyrosinase

Protein Analysis

213

Amino Acids

23.77

Weight (kDa)

8.69

Isoelectric Point (pI)

51.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005180)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g04681 FvH4_3g04690
malus_domestica	MD10G1298200.v1.1
prunus_persica	Prupe.4G042000_v2.0.a1 Prupe.4G042100_v2.0.a1
pyrus_communis	pycom10g25130
rosa_chinensis	RchiOBHm_Chr5g0007721 RchiOBHm_Chr5g0007731
rosa_laevigata	RLG00000014973 RLG00000014974 RLG00000031481 RLG00000031482
rosa_multiflora	Rmu_sc0005098.1_g000022 Rmu_sc0005098.1_g000023
rosa_roxburghii	Rroxscaffold_1G00068680 Rroxscaffold_1G00068690
rosa_rugosa	Rorug04G0429700 Rorug04G0429800
rosa_samantha	Rh3AG210400 Rh5AG058100 Rh5AG058200 Rh5BG054700 Rh5BG054900 Rh5CG064600 Rh5CG064700 Rh5CG482400 Rh5DG053900 Rh5DG054000
rosa_wichuraiana	Rw5G006150 Rw5G006160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	292, 577
AccI	GTMKAC	1 cut(s)	433
AccII	CGCG	2 cut(s)	219, 443
AciI	CCGC	2 cut(s)	377, 476
AclWI	GGATC	1 cut(s)	623
AcsI	RAATTY	4 cut(s)	10, 149, 392, 449
AcuI	CTGAAG	1 cut(s)	60
AfaI	GTAC	1 cut(s)	144
AfiI	CCNNNNNNNGG	1 cut(s)	612
AflIII	ACRYGT	1 cut(s)	441
AluBI	AGCT	5 cut(s)	98, 238, 266, 462, 545
AluI	AGCT	5 cut(s)	98, 238, 266, 462, 545
AlwI	GGATC	1 cut(s)	623
AoxI	GGCC	1 cut(s)	299
ApoI	RAATTY	4 cut(s)	10, 149, 392, 449
AspLEI	GCGC	1 cut(s)	221
AsuHPI	GGTGA	5 cut(s)	289, 505, 563, 580, 595
BanI	GGYRCC	2 cut(s)	292, 577
BccI	CCATC	1 cut(s)	542
BcgI	CGANNNNNNTGC	2 cut(s)	352, 386
BclI	TGATCA	2 cut(s)	112, 279
BfaI	CTAG	2 cut(s)	93, 640
BisI	GCNGC	1 cut(s)	476
BlsI	GCNGC	1 cut(s)	477
BmiI	GGNNCC	2 cut(s)	294, 579
BplI	GAGNNNNNCTC	2 cut(s)	87, 119
BsaBI	GATNNNNATC	2 cut(s)	117, 620
BsaJI	CCNNGG	3 cut(s)	296, 302, 581
BsaXI	ACNNNNNCTCC	2 cut(s)	335, 365
Bsc4I	CCNNNNNNNGG	1 cut(s)	612
Bse8I	GATNNNNATC	2 cut(s)	117, 620
BseDI	CCNNGG	3 cut(s)	296, 302, 581
BseGI	GGATG	1 cut(s)	202
BseJI	GATNNNNATC	2 cut(s)	117, 620
BseLI	CCNNNNNNNGG	1 cut(s)	612
BseMII	CTCAG	1 cut(s)	243
BseRI	GAGGAG	3 cut(s)	319, 328, 356
Bsh1236I	CGCG	2 cut(s)	219, 443
Bsh1285I	CGRYCG	1 cut(s)	357
BshFI	GGCC	1 cut(s)	301
BshNI	GGYRCC	2 cut(s)	292, 577
BsiEI	CGRYCG	1 cut(s)	357
BsiSI	CCGG	1 cut(s)	456
BslI	CCNNNNNNNGG	1 cut(s)	612
BsnI	GGCC	1 cut(s)	301
Bsp143I	GATC	6 cut(s)	112, 279, 354, 424, 615, 621
BspACI	CCGC	2 cut(s)	377, 476
BspANI	GGCC	1 cut(s)	301
BspCNI	CTCAG	1 cut(s)	244
BspFNI	CGCG	2 cut(s)	219, 443
BspLI	GGNNCC	2 cut(s)	294, 579
BspPI	GGATC	1 cut(s)	623
BspT107I	GGYRCC	2 cut(s)	292, 577
BssECI	CCNNGG	3 cut(s)	296, 302, 581
BssMI	GATC	6 cut(s)	112, 279, 354, 424, 615, 621
BssT1I	CCWWGG	1 cut(s)	581
Bst4CI	ACNGT	1 cut(s)	110
Bst6I	CTCTTC	3 cut(s)	327, 333, 482
BstC8I	GCNNGC	1 cut(s)	217
BstDEI	CTNAG	3 cut(s)	211, 252, 428
BstF5I	GGATG	1 cut(s)	202
BstFNI	CGCG	2 cut(s)	219, 443
BstHHI	GCGC	1 cut(s)	221
BstKTI	GATC	6 cut(s)	115, 282, 357, 427, 618, 624
BstMBI	GATC	6 cut(s)	112, 279, 354, 424, 615, 621
BstMCI	CGRYCG	1 cut(s)	357
BstMWI	GCNNNNNNNGC	1 cut(s)	383
BstNSI	RCATGY	1 cut(s)	407
BstUI	CGCG	2 cut(s)	219, 443
BsuRI	GGCC	1 cut(s)	301
BtsCI	GGATG	1 cut(s)	202
BtsIMutI	CAGTG	4 cut(s)	115, 249, 289, 640
Cac8I	GCNNGC	1 cut(s)	217
CfoI	GCGC	1 cut(s)	221
CseI	GACGC	2 cut(s)	432, 449
Csp6I	GTAC	1 cut(s)	143
CviAII	CATG	2 cut(s)	289, 404
CviJI	RGCY	8 cut(s)	98, 238, 266, 301, 386, 462, 525, 545
CviKI_1	RGCY	8 cut(s)	98, 238, 266, 301, 386, 462, 525, 545
CviQI	GTAC	1 cut(s)	143
DdeI	CTNAG	3 cut(s)	211, 252, 428
DpnI	GATC	6 cut(s)	114, 281, 356, 426, 617, 623
DpnII	GATC	6 cut(s)	112, 279, 354, 424, 615, 621
Eam1104I	CTCTTC	3 cut(s)	327, 333, 482
EarI	CTCTTC	3 cut(s)	327, 333, 482
EciI	GGCGGA	1 cut(s)	392
Eco130I	CCWWGG	1 cut(s)	581
Eco57I	CTGAAG	1 cut(s)	60
EcoT14I	CCWWGG	1 cut(s)	581
ErhI	CCWWGG	1 cut(s)	581
FaeI	CATG	2 cut(s)	292, 407
FaiI	YATR	4 cut(s)	8, 290, 405, 588
FatI	CATG	2 cut(s)	288, 403
FbaI	TGATCA	2 cut(s)	112, 279
FblI	GTMKAC	1 cut(s)	433
Fnu4HI	GCNGC	1 cut(s)	476
FokI	GGATG	1 cut(s)	189
Fsp4HI	GCNGC	1 cut(s)	476
FspBI	CTAG	2 cut(s)	93, 640
GlaI	GCGC	1 cut(s)	220
GluI	GCNGC	1 cut(s)	476
HaeIII	GGCC	1 cut(s)	301
HapII	CCGG	1 cut(s)	456
HgaI	GACGC	2 cut(s)	432, 449
HhaI	GCGC	1 cut(s)	221
Hin1II	CATG	2 cut(s)	292, 407
Hin6I	GCGC	1 cut(s)	219
HinP1I	GCGC	1 cut(s)	219
HincII	GTYRAC	1 cut(s)	434
HindII	GTYRAC	1 cut(s)	434
HindIII	AAGCTT	1 cut(s)	460
HinfI	GANTC	4 cut(s)	16, 227, 246, 272
HpaII	CCGG	1 cut(s)	456
HphI	GGTGA	5 cut(s)	289, 505, 563, 580, 595
Hpy166II	GTNNAC	1 cut(s)	434
Hpy188I	TCNGA	1 cut(s)	448
Hpy188III	TCNNGA	2 cut(s)	259, 619
Hpy8I	GTNNAC	1 cut(s)	434
Hpy99I	CGWCG	1 cut(s)	443
HpyAV	CCTTC	1 cut(s)	353
HpyCH4III	ACNGT	1 cut(s)	110
HpyCH4V	TGCA	3 cut(s)	403, 508, 592
HpyF10VI	GCNNNNNNNGC	1 cut(s)	383
HpyF3I	CTNAG	3 cut(s)	211, 252, 428
Hsp92II	CATG	2 cut(s)	292, 407
HspAI	GCGC	1 cut(s)	219
Ksp22I	TGATCA	2 cut(s)	112, 279
Kzo9I	GATC	6 cut(s)	112, 279, 354, 424, 615, 621
LmnI	GCTCC	2 cut(s)	315, 542
LpnPI	CCDG	4 cut(s)	158, 224, 469, 469
MaeI	CTAG	2 cut(s)	93, 640
MaeIII	GTNAC	2 cut(s)	44, 568
MalI	GATC	6 cut(s)	114, 281, 356, 426, 617, 623
MboI	GATC	6 cut(s)	112, 279, 354, 424, 615, 621
MboII	GAAGA	4 cut(s)	66, 344, 350, 499
MluCI	AATT	4 cut(s)	10, 149, 392, 449
MluI	ACGCGT	1 cut(s)	441
MlyI	GAGTC	3 cut(s)	236, 240, 266
MmeI	TCCRAC	1 cut(s)	510
MseI	TTAA	1 cut(s)	564
MslI	CAYNNNNRTG	1 cut(s)	408
MspI	CCGG	1 cut(s)	456
MvnI	CGCG	2 cut(s)	219, 443
MwoI	GCNNNNNNNGC	1 cut(s)	383
NdeII	GATC	6 cut(s)	112, 279, 354, 424, 615, 621
NlaIII	CATG	2 cut(s)	292, 407
NlaIV	GGNNCC	2 cut(s)	294, 579
NmeAIII	GCCGAG	2 cut(s)	321, 327
NmuCI	GTSAC	1 cut(s)	568
NspI	RCATGY	1 cut(s)	407
PfeI	GAWTC	1 cut(s)	16
PkrI	GCNGC	1 cut(s)	477
Ple19I	CGATCG	1 cut(s)	357
PleI	GAGTC	3 cut(s)	235, 240, 266
PpsI	GAGTC	3 cut(s)	235, 240, 266
PspN4I	GGNNCC	2 cut(s)	294, 579
PvuI	CGATCG	1 cut(s)	357
RsaI	GTAC	1 cut(s)	144
RsaNI	GTAC	1 cut(s)	143
RseI	CAYNNNNRTG	1 cut(s)	408
SalI	GTCGAC	1 cut(s)	432
SaqAI	TTAA	1 cut(s)	564
SatI	GCNGC	1 cut(s)	476
Sau3AI	GATC	6 cut(s)	112, 279, 354, 424, 615, 621
SchI	GAGTC	3 cut(s)	236, 240, 266
SmiMI	CAYNNNNRTG	1 cut(s)	408
Sse9I	AATT	4 cut(s)	10, 149, 392, 449
SsiI	CCGC	2 cut(s)	377, 476
SspMI	CTAG	2 cut(s)	93, 640
StyI	CCWWGG	1 cut(s)	581
TaaI	ACNGT	1 cut(s)	110
TaqI	TCGA	8 cut(s)	153, 244, 311, 353, 357, 396, 433, 624
TasI	AATT	4 cut(s)	10, 149, 392, 449
TatI	WGTACW	1 cut(s)	142
TauI	GCSGC	1 cut(s)	478
TfiI	GAWTC	1 cut(s)	16
Tru1I	TTAA	1 cut(s)	564
Tru9I	TTAA	1 cut(s)	564
TscAI	CASTG	4 cut(s)	115, 256, 289, 640
TseFI	GTSAC	1 cut(s)	568
Tsp45I	GTSAC	1 cut(s)	568
TspDTI	ATGAA	1 cut(s)	23
TspRI	CASTG	4 cut(s)	115, 256, 289, 640
XapI	RAATTY	4 cut(s)	10, 149, 392, 449
XceI	RCATGY	1 cut(s)	407
XmiI	GTMKAC	1 cut(s)	433
XspI	CTAG	2 cut(s)	93, 640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.