Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0005180

Physical Location & Seq

Genomic Coordinates Forward (+)

6328946 .. 6329416

Gene Structure 471 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G006160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGAGTGAAATACCACCGGCTTTTAGTGAATCCGAAGCATATGCTGCGGCCGAGTCAACGCCCATGAAGCTAGTAGAACTCACTGAGTTCCCGATCACTTTGGACTCGGTGATCAGCGTCACTGTGCCGAGGCCGAAGAAGTGTCGGACAAAGGAGGAAAAGGAAGAGGAAGAGGAGGTGTTAGCGATTCAAGGGATCGAGTTTGTGGCGGATGAGTTTGTGAAGTTCGACGTGCATGTCAACGATGACGAAGAAGATCTGAGTCGACCCGATAACTCCGAATTTGCGGGGAGCTTTGTGTATTTGCCGCATCGGAGGAAGACCGTGACGACGAGTCTTAGGCTTGGGATAACGGACTTGTTGGACGATTTGGGTGCTGACGGTGATGACAGTATCAAGGTGACTTTGGTGCCAAAGCATGTGAAACGACCTGTCACTATTGGGAAGATCAAGATCGAGTTTCTCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00350 ko00950 ko01100 ko01110 map00350 map00950 map01100 map01110

Pfam Domains

Protein Families

PPO1_DWL PPO1_KFDV Tyrosinase

Protein Analysis

156

Amino Acids

17.48

Weight (kDa)

4.71

Isoelectric Point (pI)

55.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPO1_KFDV	PF12143	30 - 154	4.9e-48	Chloroplastic Polyphenol Oxidase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005180)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g04681 FvH4_3g04690
malus_domestica	MD10G1298200.v1.1
prunus_persica	Prupe.4G042000_v2.0.a1 Prupe.4G042100_v2.0.a1
pyrus_communis	pycom10g25130
rosa_chinensis	RchiOBHm_Chr5g0007721 RchiOBHm_Chr5g0007731
rosa_laevigata	RLG00000014973 RLG00000014974 RLG00000031481 RLG00000031482
rosa_multiflora	Rmu_sc0005098.1_g000022 Rmu_sc0005098.1_g000023
rosa_roxburghii	Rroxscaffold_1G00068680 Rroxscaffold_1G00068690
rosa_rugosa	Rorug04G0429700 Rorug04G0429800
rosa_samantha	Rh3AG210400 Rh5AG058100 Rh5AG058200 Rh5BG054700 Rh5BG054900 Rh5CG064600 Rh5CG064700 Rh5CG482400 Rh5DG053900 Rh5DG054000
rosa_wichuraiana	Rw5G006150 Rw5G006160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	236
AccB1I	GGYRCC	1 cut(s)	409
AccI	GTMKAC	1 cut(s)	265
AciI	CCGC	4 cut(s)	47, 209, 287, 308
AclWI	GGATC	1 cut(s)	203
AcoI	YGGCCR	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	281
AgsI	TTSAA	1 cut(s)	191
AhdI	GACNNNNNGTC	1 cut(s)	333
AjiI	CACGTC	1 cut(s)	232
AluBI	AGCT	2 cut(s)	70, 294
AluI	AGCT	2 cut(s)	70, 294
AlwI	GGATC	1 cut(s)	203
AoxI	GGCC	2 cut(s)	48, 131
ApeKI	GCWGC	1 cut(s)	44
ApoI	RAATTY	1 cut(s)	281
AsuHPI	GGTGA	3 cut(s)	121, 395, 412
BanI	GGYRCC	1 cut(s)	409
BbsI	GAAGAC	1 cut(s)	326
BbvI	GCAGC	1 cut(s)	31
BcgI	CGANNNNNNTGC	4 cut(s)	23, 57, 356, 390
BclI	TGATCA	1 cut(s)	111
BfaI	CTAG	1 cut(s)	71
BglII	AGATCT	1 cut(s)	256
BisI	GCNGC	3 cut(s)	45, 48, 308
BlsI	GCNGC	3 cut(s)	46, 49, 309
BmeRI	GACNNNNNGTC	1 cut(s)	333
BmgBI	CACGTC	1 cut(s)	232
BmiI	GGNNCC	1 cut(s)	411
BmsI	GCATC	1 cut(s)	319
BpiI	GAAGAC	1 cut(s)	326
BsaBI	GATNNNNATC	1 cut(s)	452
BsaJI	CCNNGG	1 cut(s)	128
Bse118I	RCCGGY	1 cut(s)	16
Bse8I	GATNNNNATC	1 cut(s)	452
BseDI	CCNNGG	1 cut(s)	128
BseGI	GGATG	1 cut(s)	217
BseJI	GATNNNNATC	1 cut(s)	452
BseMII	CTCAG	2 cut(s)	75, 251
BseRI	GAGGAG	1 cut(s)	188
BseX3I	CGGCCG	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	31
Bsh1285I	CGRYCG	1 cut(s)	51
BshFI	GGCC	2 cut(s)	50, 133
BshNI	GGYRCC	1 cut(s)	409
BsiEI	CGRYCG	1 cut(s)	51
BsiSI	CCGG	1 cut(s)	17
BsnI	GGCC	2 cut(s)	50, 133
Bsp143I	GATC	6 cut(s)	93, 111, 195, 256, 447, 453
BspACI	CCGC	4 cut(s)	47, 209, 287, 308
BspANI	GGCC	2 cut(s)	50, 133
BspCNI	CTCAG	2 cut(s)	76, 252
BspLI	GGNNCC	1 cut(s)	411
BspPI	GGATC	1 cut(s)	203
BspT107I	GGYRCC	1 cut(s)	409
BsrFI	RCCGGY	1 cut(s)	16
BssAI	RCCGGY	1 cut(s)	16
BssECI	CCNNGG	1 cut(s)	128
BssMI	GATC	6 cut(s)	93, 111, 195, 256, 447, 453
Bst4CI	ACNGT	4 cut(s)	124, 325, 383, 392
Bst6I	CTCTTC	2 cut(s)	159, 165
BstAPI	GCANNNNNTGC	1 cut(s)	44
BstDEI	CTNAG	3 cut(s)	84, 260, 338
BstF5I	GGATG	1 cut(s)	217
BstKTI	GATC	6 cut(s)	96, 114, 198, 259, 450, 456
BstMBI	GATC	6 cut(s)	93, 111, 195, 256, 447, 453
BstMCI	CGRYCG	1 cut(s)	51
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 67
BstNSI	RCATGY	2 cut(s)	239, 422
BstV1I	GCAGC	1 cut(s)	31
BstV2I	GAAGAC	1 cut(s)	326
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
BstZI	CGGCCG	1 cut(s)	48
BsuRI	GGCC	2 cut(s)	50, 133
BtrI	CACGTC	1 cut(s)	232
BtsCI	GGATG	1 cut(s)	217
BtsIMutI	CAGTG	2 cut(s)	81, 120
Cfr10I	RCCGGY	1 cut(s)	16
CseI	GACGC	1 cut(s)	106
CviAII	CATG	3 cut(s)	64, 236, 419
CviJI	RGCY	6 cut(s)	20, 50, 70, 133, 294, 343
CviKI_1	RGCY	6 cut(s)	20, 50, 70, 133, 294, 343
DdeI	CTNAG	3 cut(s)	84, 260, 338
DpnI	GATC	6 cut(s)	95, 113, 197, 258, 449, 455
DpnII	GATC	6 cut(s)	93, 111, 195, 256, 447, 453
DrdI	GACNNNNNNGTC	1 cut(s)	236
DriI	GACNNNNNGTC	1 cut(s)	333
DseDI	GACNNNNNNGTC	1 cut(s)	236
EaeI	YGGCCR	1 cut(s)	48
EagI	CGGCCG	1 cut(s)	48
Eam1104I	CTCTTC	2 cut(s)	159, 165
Eam1105I	GACNNNNNGTC	1 cut(s)	333
EarI	CTCTTC	2 cut(s)	159, 165
EciI	GGCGGA	1 cut(s)	224
EclXI	CGGCCG	1 cut(s)	48
Eco52I	CGGCCG	1 cut(s)	48
FaeI	CATG	3 cut(s)	67, 239, 422
FaiI	YATR	5 cut(s)	40, 42, 65, 237, 420
FatI	CATG	3 cut(s)	63, 235, 418
FauI	CCCGC	1 cut(s)	280
FauNDI	CATATG	1 cut(s)	40
FbaI	TGATCA	1 cut(s)	111
FblI	GTMKAC	1 cut(s)	265
Fnu4HI	GCNGC	3 cut(s)	45, 48, 308
FokI	GGATG	1 cut(s)	224
Fsp4HI	GCNGC	3 cut(s)	45, 48, 308
FspBI	CTAG	1 cut(s)	71
GluI	GCNGC	3 cut(s)	45, 48, 308
HaeIII	GGCC	2 cut(s)	50, 133
HapII	CCGG	1 cut(s)	17
HgaI	GACGC	1 cut(s)	106
Hin1II	CATG	3 cut(s)	67, 239, 422
HincII	GTYRAC	3 cut(s)	57, 241, 266
HindII	GTYRAC	3 cut(s)	57, 241, 266
HinfI	GANTC	6 cut(s)	29, 53, 104, 187, 262, 334
HpaII	CCGG	1 cut(s)	17
HphI	GGTGA	3 cut(s)	121, 395, 412
Hpy166II	GTNNAC	3 cut(s)	57, 241, 266
Hpy188I	TCNGA	5 cut(s)	34, 147, 261, 280, 315
Hpy188III	TCNNGA	2 cut(s)	91, 451
Hpy8I	GTNNAC	3 cut(s)	57, 241, 266
Hpy99I	CGWCG	2 cut(s)	233, 334
HpyCH4III	ACNGT	4 cut(s)	124, 325, 383, 392
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	1 cut(s)	235
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 67
HpyF3I	CTNAG	3 cut(s)	84, 260, 338
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	3 cut(s)	67, 239, 422
Ksp22I	TGATCA	1 cut(s)	111
Kzo9I	GATC	6 cut(s)	93, 111, 195, 256, 447, 453
LmnI	GCTCC	1 cut(s)	291
LpnPI	CCDG	2 cut(s)	30, 444
Lsp1109I	GCAGC	1 cut(s)	31
LweI	GCATC	1 cut(s)	319
MaeI	CTAG	1 cut(s)	71
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	4 cut(s)	118, 325, 400, 433
MalI	GATC	6 cut(s)	95, 113, 197, 258, 449, 455
MboI	GATC	6 cut(s)	93, 111, 195, 256, 447, 453
MboII	GAAGA	7 cut(s)	148, 176, 182, 263, 266, 331, 457
MflI	RGATCY	1 cut(s)	256
MluCI	AATT	1 cut(s)	281
MlyI	GAGTC	4 cut(s)	62, 98, 271, 343
MmeI	TCCRAC	2 cut(s)	125, 342
MnlI	CCTC	6 cut(s)	123, 148, 160, 166, 169, 309
MspI	CCGG	1 cut(s)	17
MwoI	GCNNNNNNNGC	2 cut(s)	44, 67
NdeI	CATATG	1 cut(s)	40
NdeII	GATC	6 cut(s)	93, 111, 195, 256, 447, 453
NlaIII	CATG	3 cut(s)	67, 239, 422
NlaIV	GGNNCC	1 cut(s)	411
NmeAIII	GCCGAG	2 cut(s)	76, 153
NmuCI	GTSAC	4 cut(s)	118, 325, 400, 433
NspI	RCATGY	2 cut(s)	239, 422
PfeI	GAWTC	2 cut(s)	29, 187
PkrI	GCNGC	3 cut(s)	46, 49, 309
PleI	GAGTC	4 cut(s)	61, 98, 270, 342
PpsI	GAGTC	4 cut(s)	61, 98, 270, 342
PspN4I	GGNNCC	1 cut(s)	411
PsuI	RGATCY	1 cut(s)	256
SalI	GTCGAC	1 cut(s)	264
SatI	GCNGC	3 cut(s)	45, 48, 308
Sau3AI	GATC	6 cut(s)	93, 111, 195, 256, 447, 453
SchI	GAGTC	4 cut(s)	62, 98, 271, 343
SetI	ASST	6 cut(s)	72, 180, 234, 296, 402, 433
SfaNI	GCATC	1 cut(s)	319
Sse9I	AATT	1 cut(s)	281
SsiI	CCGC	4 cut(s)	47, 209, 287, 308
SspMI	CTAG	1 cut(s)	71
TaaI	ACNGT	4 cut(s)	124, 325, 383, 392
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	4 cut(s)	198, 228, 265, 456
TasI	AATT	1 cut(s)	281
TauI	GCSGC	2 cut(s)	50, 310
TfiI	GAWTC	2 cut(s)	29, 187
TscAI	CASTG	2 cut(s)	88, 127
TseFI	GTSAC	4 cut(s)	118, 325, 400, 433
TseI	GCWGC	1 cut(s)	44
Tsp45I	GTSAC	4 cut(s)	118, 325, 400, 433
TspDTI	ATGAA	1 cut(s)	80
TspGWI	ACGGA	1 cut(s)	368
TspRI	CASTG	2 cut(s)	88, 127
XapI	RAATTY	1 cut(s)	281
XceI	RCATGY	2 cut(s)	239, 422
XmiI	GTMKAC	1 cut(s)	265
XspI	CTAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.