Wings apart-like protein regulation of heterochromatin
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G11060 AT1G61030 |
| fragaria_vesca | FvH4_3g04800 FvH4_3g04800 |
| malus_domestica | MD05G1316600.v1.1 MD10G1297100.v1.1 |
| prunus_persica | Prupe.4G043300_v2.0.a1 Prupe.4G043300_v2.0.a1 Prupe.4G043300_v2.0.a1 |
| pyrus_communis | pycom05g29370 pycom10g25000 |
| rosa_chinensis | RchiOBHm_Chr5g0007891 |
| rosa_laevigata | RLG00000031502 |
| rosa_multiflora | Rmu_sc0005098.1_g000006 |
| rosa_roxburghii | Rroxscaffold_1G00068540 |
| rosa_rugosa | Rorug04G0430900 |
| rosa_samantha | Rh5AG059800 Rh5BG056700 Rh5CG066500 Rh5DG055700 Rh7CG256700 |
| rosa_wichuraiana | Rw5G006040 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1265 |
| AarI | CACCTGC | 1 cut(s) | 2036 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 101 |
| AatII | GACGTC | 2 cut(s) | 105, 2039 |
| Acc36I | ACCTGC | 1 cut(s) | 2036 |
| AccII | CGCG | 4 cut(s) | 84, 274, 404, 1422 |
| AciI | CCGC | 7 cut(s) | 22, 25, 82, 84, 292, 326, 1123 |
| AcoI | YGGCCR | 1 cut(s) | 19 |
| AcuI | CTGAAG | 4 cut(s) | 720, 1839, 2209, 2514 |
| AcyI | GRCGYC | 3 cut(s) | 75, 102, 2036 |
| AdeI | CACNNNGTG | 1 cut(s) | 767 |
| AfaI | GTAC | 7 cut(s) | 481, 816, 967, 1270, 1528, 2622, 2673 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 28, 719, 1352, 1843 |
| AflIII | ACRYGT | 1 cut(s) | 608 |
| AgeI | ACCGGT | 1 cut(s) | 266 |
| AhdI | GACNNNNNGTC | 4 cut(s) | 193, 241, 1408, 1477 |
| AjiI | CACGTC | 2 cut(s) | 609, 1461 |
| AjnI | CCWGG | 4 cut(s) | 44, 1128, 1505, 2658 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 143, 175, 1205, 1237, 1992, 2024 |
| Alw21I | GWGCWC | 1 cut(s) | 772 |
| Alw26I | GTCTC | 8 cut(s) | 487, 1594, 1697, 2027, 2168, 2223, 2648, 2723 |
| Alw44I | GTGCAC | 1 cut(s) | 768 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2051 |
| AoxI | GGCC | 4 cut(s) | 19, 37, 260, 1018 |
| ApaLI | GTGCAC | 1 cut(s) | 768 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 669, 701 |
| AsiGI | ACCGGT | 1 cut(s) | 266 |
| AspLEI | GCGC | 3 cut(s) | 331, 358, 406 |
| AspS9I | GGNCC | 2 cut(s) | 12, 204 |
| AsuC2I | CCSGG | 1 cut(s) | 2648 |
| AsuHPI | GGTGA | 6 cut(s) | 98, 633, 881, 1495, 1691, 2715 |
| AsuII | TTCGAA | 1 cut(s) | 2412 |
| AsuNHI | GCTAGC | 1 cut(s) | 2195 |
| AvaII | GGWCC | 2 cut(s) | 12, 204 |
| BaeGI | GKGCMC | 1 cut(s) | 772 |
| BamHI | GGATCC | 1 cut(s) | 1225 |
| BanII | GRGCYC | 1 cut(s) | 225 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1075, 1107 |
| BbsI | GAAGAC | 5 cut(s) | 99, 1493, 1827, 2022, 2175 |
| Bbv12I | GWGCWC | 1 cut(s) | 772 |
| BceAI | ACGGC | 5 cut(s) | 34, 62, 295, 354, 2384 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 563, 597 |
| BciT130I | CCWGG | 4 cut(s) | 46, 1130, 1507, 2660 |
| BciVI | GTATCC | 2 cut(s) | 1576, 2763 |
| BclI | TGATCA | 1 cut(s) | 2290 |
| BcnI | CCSGG | 1 cut(s) | 2648 |
| BcoDI | GTCTC | 8 cut(s) | 487, 1594, 1697, 2027, 2168, 2223, 2648, 2723 |
| BfaI | CTAG | 7 cut(s) | 570, 734, 1521, 2196, 2300, 2465, 2669 |
| BfmI | CTRYAG | 1 cut(s) | 2376 |
| BfoI | RGCGCY | 1 cut(s) | 332 |
| BfuAI | ACCTGC | 1 cut(s) | 2036 |
| BfuI | GTATCC | 2 cut(s) | 1576, 2763 |
| Bme1390I | CCNGG | 5 cut(s) | 46, 1130, 1507, 2648, 2660 |
| Bme18I | GGWCC | 2 cut(s) | 12, 204 |
| BmeRI | GACNNNNNGTC | 4 cut(s) | 193, 241, 1408, 1477 |
| BmgBI | CACGTC | 2 cut(s) | 609, 1461 |
| BmgT120I | GGNCC | 2 cut(s) | 12, 204 |
| BmiI | GGNNCC | 7 cut(s) | 206, 222, 1127, 1227, 1675, 1777, 2068 |
| BmrFI | CCNGG | 5 cut(s) | 46, 1130, 1507, 2648, 2660 |
| BmsI | GCATC | 5 cut(s) | 117, 1015, 1675, 1777, 2617 |
| BmtI | GCTAGC | 1 cut(s) | 2199 |
| BpiI | GAAGAC | 5 cut(s) | 99, 1493, 1827, 2022, 2175 |
| BpmI | CTGGAG | 2 cut(s) | 772, 2192 |
| Bpu14I | TTCGAA | 1 cut(s) | 2412 |
| BpuMI | CCSGG | 1 cut(s) | 2648 |
| BsaAI | YACGTR | 1 cut(s) | 2624 |
| BsaHI | GRCGYC | 3 cut(s) | 75, 102, 2036 |
| BsaI | GGTCTC | 3 cut(s) | 1594, 1697, 2168 |
| BsaJI | CCNNGG | 4 cut(s) | 44, 82, 1230, 2473 |
| BsaWI | WCCGGW | 3 cut(s) | 266, 1676, 2725 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 44, 74, 2165, 2195 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 28, 719, 1352, 1843 |
| Bse118I | RCCGGY | 2 cut(s) | 266, 430 |
| Bse1I | ACTGG | 7 cut(s) | 967, 1440, 1591, 1779, 1972, 2070, 2175 |
| Bse3DI | GCAATG | 3 cut(s) | 737, 1405, 2631 |
| BseBI | CCWGG | 4 cut(s) | 46, 1130, 1507, 2660 |
| BseDI | CCNNGG | 4 cut(s) | 44, 82, 1230, 2473 |
| BseGI | GGATG | 5 cut(s) | 415, 522, 628, 1690, 1792 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 28, 719, 1352, 1843 |
| BseMI | GCAATG | 3 cut(s) | 737, 1405, 2631 |
| BseMII | CTCAG | 9 cut(s) | 494, 524, 565, 1169, 1362, 1708, 1810, 1907, 2544 |
| BseNI | ACTGG | 7 cut(s) | 967, 1440, 1591, 1779, 1972, 2070, 2175 |
| BseRI | GAGGAG | 6 cut(s) | 48, 121, 1655, 1757, 1974, 2432 |
| BseSI | GKGCMC | 1 cut(s) | 772 |
| BseX3I | CGGCCG | 1 cut(s) | 19 |
| BseYI | CCCAGC | 2 cut(s) | 466, 980 |
| BsgI | GTGCAG | 1 cut(s) | 2499 |
| Bsh1236I | CGCG | 4 cut(s) | 84, 274, 404, 1422 |
| Bsh1285I | CGRYCG | 1 cut(s) | 22 |
| BshFI | GGCC | 4 cut(s) | 21, 39, 262, 1020 |
| BshTI | ACCGGT | 1 cut(s) | 266 |
| BsiEI | CGRYCG | 1 cut(s) | 22 |
| BsiHKAI | GWGCWC | 1 cut(s) | 772 |
| BsiSI | CCGG | 7 cut(s) | 267, 431, 884, 1677, 2030, 2648, 2726 |
| BslFI | GGGAC | 2 cut(s) | 190, 1913 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 28, 719, 1352, 1843 |
| BsmAI | GTCTC | 8 cut(s) | 487, 1594, 1697, 2027, 2168, 2223, 2648, 2723 |
| BsmBI | CGTCTC | 3 cut(s) | 487, 2027, 2223 |
| BsmFI | GGGAC | 2 cut(s) | 190, 1913 |
| BsnI | GGCC | 4 cut(s) | 21, 39, 262, 1020 |
| Bso31I | GGTCTC | 3 cut(s) | 1594, 1697, 2168 |
| Bsp119I | TTCGAA | 1 cut(s) | 2412 |
| Bsp1286I | GDGCHC | 2 cut(s) | 225, 772 |
| Bsp19I | CCATGG | 1 cut(s) | 1230 |
| Bsp68I | TCGCGA | 1 cut(s) | 274 |
| BspACI | CCGC | 7 cut(s) | 22, 25, 82, 84, 292, 326, 1123 |
| BspANI | GGCC | 4 cut(s) | 21, 39, 262, 1020 |
| BspCNI | CTCAG | 9 cut(s) | 495, 523, 564, 1170, 1363, 1707, 1809, 1906, 2545 |
| BspFNI | CGCG | 4 cut(s) | 84, 274, 404, 1422 |
| BspLI | GGNNCC | 7 cut(s) | 206, 222, 1127, 1227, 1675, 1777, 2068 |
| BspMAI | CTGCAG | 1 cut(s) | 2380 |
| BspMI | ACCTGC | 1 cut(s) | 2036 |
| BspOI | GCTAGC | 1 cut(s) | 2199 |
| BspT104I | TTCGAA | 1 cut(s) | 2412 |
| BspTNI | GGTCTC | 3 cut(s) | 1594, 1697, 2168 |
| BsrDI | GCAATG | 3 cut(s) | 737, 1405, 2631 |
| BsrFI | RCCGGY | 2 cut(s) | 266, 430 |
| BsrI | ACTGG | 7 cut(s) | 967, 1440, 1591, 1779, 1972, 2070, 2175 |
| BssAI | RCCGGY | 2 cut(s) | 266, 430 |
| BssECI | CCNNGG | 4 cut(s) | 44, 82, 1230, 2473 |
| BssNI | GRCGYC | 3 cut(s) | 75, 102, 2036 |
| BssT1I | CCWWGG | 2 cut(s) | 1230, 2473 |
| Bst2UI | CCWGG | 4 cut(s) | 46, 1130, 1507, 2660 |
| Bst4CI | ACNGT | 2 cut(s) | 970, 2642 |
| Bst6I | CTCTTC | 2 cut(s) | 251, 2409 |
| BstACI | GRCGYC | 3 cut(s) | 75, 102, 2036 |
| BstBAI | YACGTR | 1 cut(s) | 2624 |
| BstBI | TTCGAA | 1 cut(s) | 2412 |
| BstDSI | CCRYGG | 2 cut(s) | 82, 1230 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1841 |
| BstF5I | GGATG | 5 cut(s) | 415, 522, 628, 1690, 1792 |
| BstFNI | CGCG | 4 cut(s) | 84, 274, 404, 1422 |
| BstH2I | RGCGCY | 1 cut(s) | 332 |
| BstHHI | GCGC | 3 cut(s) | 331, 358, 406 |
| BstMAI | GTCTC | 8 cut(s) | 487, 1594, 1697, 2027, 2168, 2223, 2648, 2723 |
| BstMCI | CGRYCG | 1 cut(s) | 22 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 332, 459, 2579 |
| BstNI | CCWGG | 4 cut(s) | 46, 1130, 1507, 2660 |
| BstNSI | RCATGY | 2 cut(s) | 386, 883 |
| BstSCI | CCNGG | 5 cut(s) | 44, 1128, 1505, 2646, 2658 |
| BstSFI | CTRYAG | 1 cut(s) | 2376 |
| BstSLI | GKGCMC | 1 cut(s) | 772 |
| BstUI | CGCG | 4 cut(s) | 84, 274, 404, 1422 |
| BstV2I | GAAGAC | 5 cut(s) | 99, 1493, 1827, 2022, 2175 |
| BstX2I | RGATCY | 9 cut(s) | 547, 822, 1225, 1651, 1753, 1805, 1855, 2434, 2489 |
| BstYI | RGATCY | 9 cut(s) | 547, 822, 1225, 1651, 1753, 1805, 1855, 2434, 2489 |
| BstZI | CGGCCG | 1 cut(s) | 19 |
| BsuI | GTATCC | 2 cut(s) | 1576, 2763 |
| BsuRI | GGCC | 4 cut(s) | 21, 39, 262, 1020 |
| BtgI | CCRYGG | 2 cut(s) | 82, 1230 |
| BtgZI | GCGATG | 1 cut(s) | 297 |
| BtrI | CACGTC | 2 cut(s) | 609, 1461 |
| BtsCI | GGATG | 5 cut(s) | 415, 522, 628, 1690, 1792 |
| BtsI | GCAGTG | 1 cut(s) | 206 |
| BtsIMutI | CAGTG | 5 cut(s) | 206, 1786, 1901, 2233, 2389 |
| BtuMI | TCGCGA | 1 cut(s) | 274 |
| BveI | ACCTGC | 1 cut(s) | 2036 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2051 |
| CfoI | GCGC | 3 cut(s) | 331, 358, 406 |
| Cfr10I | RCCGGY | 2 cut(s) | 266, 430 |
| Cfr13I | GGNCC | 2 cut(s) | 12, 204 |
| Cfr42I | CCGCGG | 1 cut(s) | 85 |
| CseI | GACGC | 2 cut(s) | 83, 352 |
| CsiI | ACCWGGT | 1 cut(s) | 1128 |
| Csp6I | GTAC | 7 cut(s) | 480, 815, 966, 1269, 1527, 2621, 2672 |
| CspAI | ACCGGT | 1 cut(s) | 266 |
| CviQI | GTAC | 7 cut(s) | 480, 815, 966, 1269, 1527, 2621, 2672 |
| DraIII | CACNNNGTG | 1 cut(s) | 767 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 101 |
| DriI | GACNNNNNGTC | 4 cut(s) | 193, 241, 1408, 1477 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 101 |
| EaeI | YGGCCR | 1 cut(s) | 19 |
| EagI | CGGCCG | 1 cut(s) | 19 |
| Eam1104I | CTCTTC | 2 cut(s) | 251, 2409 |
| Eam1105I | GACNNNNNGTC | 4 cut(s) | 193, 241, 1408, 1477 |
| EarI | CTCTTC | 2 cut(s) | 251, 2409 |
| EclXI | CGGCCG | 1 cut(s) | 19 |
| Eco130I | CCWWGG | 2 cut(s) | 1230, 2473 |
| Eco147I | AGGCCT | 3 cut(s) | 39, 262, 1020 |
| Eco24I | GRGCYC | 1 cut(s) | 225 |
| Eco31I | GGTCTC | 3 cut(s) | 1594, 1697, 2168 |
| Eco32I | GATATC | 1 cut(s) | 757 |
| Eco47I | GGWCC | 2 cut(s) | 12, 204 |
| Eco52I | CGGCCG | 1 cut(s) | 19 |
| Eco57I | CTGAAG | 4 cut(s) | 720, 1839, 2209, 2514 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1841 |
| EcoO109I | RGGNCCY | 1 cut(s) | 12 |
| EcoRII | CCWGG | 4 cut(s) | 44, 1128, 1505, 2658 |
| EcoRV | GATATC | 1 cut(s) | 757 |
| EcoT14I | CCWWGG | 2 cut(s) | 1230, 2473 |
| EcoT38I | GRGCYC | 1 cut(s) | 225 |
| ErhI | CCWWGG | 2 cut(s) | 1230, 2473 |
| Esp3I | CGTCTC | 3 cut(s) | 487, 2027, 2223 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1821, 1853 |
| FaqI | GGGAC | 2 cut(s) | 190, 1913 |
| FauNDI | CATATG | 1 cut(s) | 1771 |
| FbaI | TGATCA | 1 cut(s) | 2290 |
| FokI | GGATG | 5 cut(s) | 422, 529, 635, 1697, 1799 |
| FriOI | GRGCYC | 1 cut(s) | 225 |
| FspBI | CTAG | 7 cut(s) | 570, 734, 1521, 2196, 2300, 2465, 2669 |
| GlaI | GCGC | 3 cut(s) | 330, 357, 405 |
| GsaI | CCCAGC | 2 cut(s) | 470, 984 |
| GsuI | CTGGAG | 2 cut(s) | 772, 2192 |
| HaeII | RGCGCY | 1 cut(s) | 332 |
| HaeIII | GGCC | 4 cut(s) | 21, 39, 262, 1020 |
| HapII | CCGG | 7 cut(s) | 267, 431, 884, 1677, 2030, 2648, 2726 |
| HgaI | GACGC | 2 cut(s) | 83, 352 |
| HhaI | GCGC | 3 cut(s) | 331, 358, 406 |
| Hin1I | GRCGYC | 3 cut(s) | 75, 102, 2036 |
| Hin6I | GCGC | 3 cut(s) | 329, 356, 404 |
| HinP1I | GCGC | 3 cut(s) | 329, 356, 404 |
| HincII | GTYRAC | 1 cut(s) | 1834 |
| HindII | GTYRAC | 1 cut(s) | 1834 |
| HindIII | AAGCTT | 4 cut(s) | 728, 927, 1950, 2571 |
| HpaII | CCGG | 7 cut(s) | 267, 431, 884, 1677, 2030, 2648, 2726 |
| HphI | GGTGA | 6 cut(s) | 98, 633, 881, 1495, 1691, 2715 |
| Hpy166II | GTNNAC | 8 cut(s) | 388, 770, 1413, 1574, 1834, 2335, 2389, 2621 |
| Hpy188III | TCNNGA | 7 cut(s) | 273, 620, 661, 950, 1177, 1853, 2294 |
| Hpy8I | GTNNAC | 8 cut(s) | 388, 770, 1413, 1574, 1834, 2335, 2389, 2621 |
| HpyCH4III | ACNGT | 2 cut(s) | 970, 2642 |
| HpyCH4IV | ACGT | 7 cut(s) | 102, 600, 608, 1460, 2036, 2623, 2708 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 332, 459, 2579 |
| HpySE526I | ACGT | 7 cut(s) | 102, 600, 608, 1460, 2036, 2623, 2708 |
| Hsp92I | GRCGYC | 3 cut(s) | 75, 102, 2036 |
| HspAI | GCGC | 3 cut(s) | 329, 356, 404 |
| Ksp22I | TGATCA | 1 cut(s) | 2290 |
| KspI | CCGCGG | 1 cut(s) | 85 |
| LmnI | GCTCC | 2 cut(s) | 220, 379 |
| LweI | GCATC | 5 cut(s) | 117, 1015, 1675, 1777, 2617 |
| MabI | ACCWGGT | 1 cut(s) | 1128 |
| MaeI | CTAG | 7 cut(s) | 570, 734, 1521, 2196, 2300, 2465, 2669 |
| MaeII | ACGT | 7 cut(s) | 102, 600, 608, 1460, 2036, 2623, 2708 |
| MaeIII | GTNAC | 6 cut(s) | 86, 685, 829, 986, 2426, 2654 |
| MfeI | CAATTG | 2 cut(s) | 681, 1208 |
| MflI | RGATCY | 9 cut(s) | 547, 822, 1225, 1651, 1753, 1805, 1855, 2434, 2489 |
| MhlI | GDGCHC | 2 cut(s) | 225, 772 |
| MlyI | GAGTC | 8 cut(s) | 53, 182, 248, 502, 779, 1817, 1858, 2725 |
| MmeI | TCCRAC | 2 cut(s) | 81, 1203 |
| MseI | TTAA | 5 cut(s) | 993, 1541, 1562, 1884, 2711 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1305, 1463, 2258 |
| MspA1I | CMGCKG | 2 cut(s) | 84, 2528 |
| MspI | CCGG | 7 cut(s) | 267, 431, 884, 1677, 2030, 2648, 2726 |
| MspR9I | CCNGG | 5 cut(s) | 46, 1130, 1507, 2648, 2660 |
| MunI | CAATTG | 2 cut(s) | 681, 1208 |
| MvaI | CCWGG | 4 cut(s) | 46, 1130, 1507, 2660 |
| MvnI | CGCG | 4 cut(s) | 84, 274, 404, 1422 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 332, 459, 2579 |
| NciI | CCSGG | 1 cut(s) | 2648 |
| NcoI | CCATGG | 1 cut(s) | 1230 |
| NdeI | CATATG | 1 cut(s) | 1771 |
| NheI | GCTAGC | 1 cut(s) | 2195 |
| NlaIV | GGNNCC | 7 cut(s) | 206, 222, 1127, 1227, 1675, 1777, 2068 |
| NmeAIII | GCCGAG | 1 cut(s) | 773 |
| NmuCI | GTSAC | 3 cut(s) | 86, 685, 2426 |
| NruI | TCGCGA | 1 cut(s) | 274 |
| NspI | RCATGY | 2 cut(s) | 386, 883 |
| NspV | TTCGAA | 1 cut(s) | 2412 |
| PaeI | GCATGC | 1 cut(s) | 883 |
| PaqCI | CACCTGC | 1 cut(s) | 2036 |
| PceI | AGGCCT | 3 cut(s) | 39, 262, 1020 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 108, 188, 305 |
| PfeI | GAWTC | 6 cut(s) | 126, 215, 638, 2000, 2131, 2759 |
| PflFI | GACNNNGTC | 3 cut(s) | 77, 392, 2179 |
| PfoI | TCCNGGA | 2 cut(s) | 1505, 2646 |
| PinAI | ACCGGT | 1 cut(s) | 266 |
| PleI | GAGTC | 8 cut(s) | 53, 182, 247, 502, 779, 1817, 1857, 2725 |
| PpsI | GAGTC | 8 cut(s) | 53, 182, 247, 502, 779, 1817, 1857, 2725 |
| Ppu21I | YACGTR | 1 cut(s) | 2624 |
| PpuMI | RGGWCCY | 1 cut(s) | 12 |
| PsiI | TTATAA | 1 cut(s) | 1265 |
| Psp5II | RGGWCCY | 1 cut(s) | 12 |
| Psp6I | CCWGG | 4 cut(s) | 44, 1128, 1505, 2658 |
| PspFI | CCCAGC | 2 cut(s) | 466, 980 |
| PspGI | CCWGG | 4 cut(s) | 44, 1128, 1505, 2658 |
| PspN4I | GGNNCC | 7 cut(s) | 206, 222, 1127, 1227, 1675, 1777, 2068 |
| PspPI | GGNCC | 2 cut(s) | 12, 204 |
| PspPPI | RGGWCCY | 1 cut(s) | 12 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2050, 2082 |
| PstI | CTGCAG | 1 cut(s) | 2380 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2051 |
| PsuI | RGATCY | 9 cut(s) | 547, 822, 1225, 1651, 1753, 1805, 1855, 2434, 2489 |
| PsyI | GACNNNGTC | 3 cut(s) | 77, 392, 2179 |
| PvuII | CAGCTG | 1 cut(s) | 2528 |
| RruI | TCGCGA | 1 cut(s) | 274 |
| RsaI | GTAC | 7 cut(s) | 481, 816, 967, 1270, 1528, 2622, 2673 |
| RsaNI | GTAC | 7 cut(s) | 480, 815, 966, 1269, 1527, 2621, 2672 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1305, 1463, 2258 |
| SacII | CCGCGG | 1 cut(s) | 85 |
| SaqAI | TTAA | 5 cut(s) | 993, 1541, 1562, 1884, 2711 |
| Sau96I | GGNCC | 2 cut(s) | 12, 204 |
| SchI | GAGTC | 8 cut(s) | 53, 182, 248, 502, 779, 1817, 1858, 2725 |
| ScrFI | CCNGG | 5 cut(s) | 46, 1130, 1507, 2648, 2660 |
| SduI | GDGCHC | 2 cut(s) | 225, 772 |
| SexAI | ACCWGGT | 1 cut(s) | 1128 |
| SfaNI | GCATC | 5 cut(s) | 117, 1015, 1675, 1777, 2617 |
| SfcI | CTRYAG | 1 cut(s) | 2376 |
| Sfr303I | CCGCGG | 1 cut(s) | 85 |
| SfuI | TTCGAA | 1 cut(s) | 2412 |
| SgrBI | CCGCGG | 1 cut(s) | 85 |
| SinI | GGWCC | 2 cut(s) | 12, 204 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1305, 1463, 2258 |
| SphI | GCATGC | 1 cut(s) | 883 |
| SseBI | AGGCCT | 3 cut(s) | 39, 262, 1020 |
| SsiI | CCGC | 7 cut(s) | 22, 25, 82, 84, 292, 326, 1123 |
| SspMI | CTAG | 7 cut(s) | 570, 734, 1521, 2196, 2300, 2465, 2669 |
| StuI | AGGCCT | 3 cut(s) | 39, 262, 1020 |
| StyD4I | CCNGG | 5 cut(s) | 44, 1128, 1505, 2646, 2658 |
| StyI | CCWWGG | 2 cut(s) | 1230, 2473 |
| TaaI | ACNGT | 2 cut(s) | 970, 2642 |
| TaiI | ACGT | 7 cut(s) | 105, 603, 611, 1463, 2039, 2626, 2711 |
| TaqI | TCGA | 4 cut(s) | 111, 213, 299, 2412 |
| TatI | WGTACW | 1 cut(s) | 814 |
| TauI | GCSGC | 3 cut(s) | 24, 27, 329 |
| TfiI | GAWTC | 6 cut(s) | 126, 215, 638, 2000, 2131, 2759 |
| Tru1I | TTAA | 5 cut(s) | 993, 1541, 1562, 1884, 2711 |
| Tru9I | TTAA | 5 cut(s) | 993, 1541, 1562, 1884, 2711 |
| TscAI | CASTG | 5 cut(s) | 206, 1786, 1901, 2233, 2389 |
| TseFI | GTSAC | 3 cut(s) | 86, 685, 2426 |
| Tsp45I | GTSAC | 3 cut(s) | 86, 685, 2426 |
| TspDTI | ATGAA | 5 cut(s) | 860, 1374, 1887, 2129, 2199 |
| TspGWI | ACGGA | 2 cut(s) | 1570, 1591 |
| TspRI | CASTG | 5 cut(s) | 206, 1786, 1901, 2233, 2389 |
| Tth111I | GACNNNGTC | 3 cut(s) | 77, 392, 2179 |
| VneI | GTGCAC | 1 cut(s) | 768 |
| VpaK11BI | GGWCC | 2 cut(s) | 12, 204 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1841 |
| XceI | RCATGY | 2 cut(s) | 386, 883 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1420 |
| XspI | CTAG | 7 cut(s) | 570, 734, 1521, 2196, 2300, 2465, 2669 |
| ZraI | GACGTC | 2 cut(s) | 103, 2037 |