FvH4_3g04870

Trafficking protein particle complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0009422
Physical Location & Seq
Forward (+)
2815373 .. 2819981
4609 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g04870.t1

Sequence Viewer

Length: 1338 bp
ATGAGCAGCGGCGGCGGCGGCCAAGGTGGACCCCACTCACTGGCCTTCAGGGTGATGCGTCTCTGCAAGCCCTCCTTCCAGGTGGAGTCCCTCCCCCTCCTCCTCGACCCCGCCGATCTCCTCGTCGGCGAAGACATCTTCGACGACCCCCTCGCCGCCGTTCAGGTCCCCCGCCTCCTCGACAGCCACGTGTCCTCCTCCGCCGACTCCTCCTCCTCCTCCGATCCCAGCTACCGCTCCCGATTGCTCCTCCGCCACCCCTCCGACTCCATCGGCCTCTCCGGCCTCCTCGTCCTCCCCCAAGCCTTCGGAGCGATTTACTTAGGGGAGACGTTTTGTAGCTACATTAGCATCAACAACAGCTCCAGTTTCGAAGTCCGGGACATTATAATCAAGGCGGAGATGCAGACAGAGAGGCAGAGGCTTGTGCTGTTGGAGACCTCAAAAATGCCGGTGGAGTCCATACGCGCCGGAGGGCGTTACGACTTCATTGTTGAGCATGATGTGAAGGAACTCGGAGCTCACACGTTGGTGTGCACTGCATTGTACAATGATGGTGAGGGCGAGCGTAAATACCTACCGCAGTTCTTCAAGTTCATTGTGGCGAATCCTCTTTCGGTTCGGACTAAGGTCCGTGTTGTTAAGGAAACTACCTTTTTAGAAGCTTGCATTGAAAATCATACGAAATCAAATCTTTTTATGGATCAAGTTGAATTTGAACCTGCTGGGCACTGGGGTGCAAAACTTCTAAAAGCTGATGAACACCAATCTGAGACGAAATCTCAAACAAGAGATCTGTTTAAGCCACCAGTTCTCATCAGATCTGGTGGAGGAATTCGTAACTATCTTTATCAGTTAATATCACATGGGTCTGCCCAAACGAAAGTGGAGGGAAGCAATATTCTTGGTAAACTTCAGATAACTTGGCGAACTAATCTGGGTGAACCCGGTCGCTTACAAACACAGCAAATTATGGGCACTCCCATAACACGAAAGGATATTGAGTTGCAAGTTGTGGAGATACCATCTGTCATCAAATTGGAAAGACCCTTTTCGCTACACTTAAAATTAGCAAATGAGACAGAAAAAGAACTTGGCCCATTTGAAGTTTCTTTATCCCAAGATGATTCACGCGAGGAGAAGGTTGTCGTGATTAATGGTCTTCAAACTGTGGTATTTCCAAGTGTTGAAGCATTTGGTTCCAAGGAGTTTCATCTGAACCTCATTGCTACCAAACTTGGAGTTCAGAAGATCACAGGCATCACTGTTTTTAACACAATGGAGAGAAAATCATATGATCCTTTGCCAGATTTAGAGATATATGTGGATCTGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF974

Protein Analysis

446

Amino Acids

49.44

Weight (kDa)

5.66

Isoelectric Point (pI)

38.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAPPC13_N PF06159 12 - 201 6e-37 Trafficking protein particle complex subunit 13, N-terminal
TRAPPC13_M PF23647 205 - 324 2.3e-21 Trafficking protein particle complex subunit 13, middle domain
TRAPPC13_C PF23643 342 - 433 5.7e-12 Trafficking protein particle complex subunit 13, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 389
Acc36I ACCTGC 1 cut(s) 730
AccB7I CCANNNNNTGG 1 cut(s) 40
AccBSI CCGCTC 1 cut(s) 237
AccII CGCG 2 cut(s) 468, 1134
AclWI GGATC 4 cut(s) 218, 711, 1292, 1335
AcoI YGGCCR 1 cut(s) 19
AcsI RAATTY 2 cut(s) 713, 834
AcuI CTGAAG 2 cut(s) 31, 899
AcvI CACGTG 1 cut(s) 190
AfaI GTAC 1 cut(s) 548
AfiI CCNNNNNNNGG 1 cut(s) 40
AflIII ACRYGT 2 cut(s) 189, 525
AgsI TTSAA 7 cut(s) 592, 674, 713, 719, 1106, 1166, 1190
AjnI CCWGG 1 cut(s) 78
AjuI GAANNNNNNNTTGG 2 cut(s) 1077, 1109
AleI CACNNNNGTG 2 cut(s) 530, 735
AluBI AGCT 6 cut(s) 231, 342, 363, 521, 665, 755
AluI AGCT 6 cut(s) 231, 342, 363, 521, 665, 755
Alw21I GWGCWC 2 cut(s) 523, 539
Alw26I GTCTC 5 cut(s) 65, 323, 431, 767, 1073
Alw44I GTGCAC 1 cut(s) 535
AlwI GGATC 4 cut(s) 218, 711, 1292, 1335
AoxI GGCC 5 cut(s) 19, 42, 274, 283, 1096
ApaLI GTGCAC 1 cut(s) 535
ApeKI GCWGC 1 cut(s) 6
ApoI RAATTY 2 cut(s) 713, 834
AseI ATTAAT 1 cut(s) 1155
AspLEI GCGC 1 cut(s) 470
AspS9I GGNCC 4 cut(s) 29, 166, 631, 1097
AsuC2I CCSGG 2 cut(s) 380, 948
AsuHPI GGTGA 3 cut(s) 64, 569, 953
AsuII TTCGAA 1 cut(s) 372
AvaII GGWCC 3 cut(s) 29, 166, 631
BaeGI GKGCMC 3 cut(s) 539, 732, 980
BanII GRGCYC 1 cut(s) 523
BbrPI CACGTG 1 cut(s) 190
BbsI GAAGAC 2 cut(s) 138, 1154
Bbv12I GWGCWC 2 cut(s) 523, 539
BbvI GCAGC 1 cut(s) 18
BccI CCATC 3 cut(s) 278, 548, 1033
BceAI ACGGC 1 cut(s) 143
BciT130I CCWGG 1 cut(s) 80
BcnI CCSGG 2 cut(s) 380, 948
BcoDI GTCTC 5 cut(s) 65, 323, 431, 767, 1073
BfuAI ACCTGC 1 cut(s) 730
BglI GCCNNNNNGGC 1 cut(s) 282
BglII AGATCT 2 cut(s) 793, 821
BisI GCNGC 6 cut(s) 7, 10, 13, 16, 19, 156
BlsI GCNGC 6 cut(s) 8, 11, 14, 17, 20, 157
Bme1390I CCNGG 3 cut(s) 80, 380, 948
Bme18I GGWCC 3 cut(s) 29, 166, 631
BmgT120I GGNCC 4 cut(s) 29, 166, 631, 1097
BmiI GGNNCC 3 cut(s) 31, 168, 1201
BmrFI CCNGG 3 cut(s) 80, 380, 948
BmrI ACTGGG 1 cut(s) 742
BmsI GCATC 4 cut(s) 45, 360, 393, 1269
BmuI ACTGGG 1 cut(s) 742
BoxI GACNNNNGTC 1 cut(s) 629
BpiI GAAGAC 2 cut(s) 138, 1154
BpmI CTGGAG 1 cut(s) 349
Bpu14I TTCGAA 1 cut(s) 372
BpuMI CCSGG 2 cut(s) 380, 948
BsaAI YACGTR 1 cut(s) 190
BsaI GGTCTC 1 cut(s) 431
BsaJI CCNNGG 2 cut(s) 22, 1203
BsaXI ACNNNNNCTCC 6 cut(s) 179, 197, 209, 227, 347, 377
Bsc4I CCNNNNNNNGG 1 cut(s) 40
Bse118I RCCGGY 1 cut(s) 451
Bse1I ACTGG 4 cut(s) 45, 366, 737, 809
Bse3DI GCAATG 1 cut(s) 1224
BseBI CCWGG 1 cut(s) 80
BseDI CCNNGG 2 cut(s) 22, 1203
BseLI CCNNNNNNNGG 1 cut(s) 40
BseMI GCAATG 1 cut(s) 1224
BseMII CTCAG 1 cut(s) 762
BseNI ACTGG 4 cut(s) 45, 366, 737, 809
BseSI GKGCMC 3 cut(s) 539, 732, 980
BseXI GCAGC 1 cut(s) 18
BseYI CCCAGC 2 cut(s) 227, 725
Bsh1236I CGCG 2 cut(s) 468, 1134
Bsh1285I CGRYCG 1 cut(s) 952
BshFI GGCC 5 cut(s) 21, 44, 276, 285, 1098
BsiEI CGRYCG 1 cut(s) 952
BsiHKAI GWGCWC 2 cut(s) 523, 539
BsiSI CCGG 5 cut(s) 282, 379, 452, 471, 948
BslFI GGGAC 3 cut(s) 73, 152, 395
BslI CCNNNNNNNGG 1 cut(s) 40
BsmAI GTCTC 5 cut(s) 65, 323, 431, 767, 1073
BsmBI CGTCTC 3 cut(s) 65, 323, 767
BsmFI GGGAC 3 cut(s) 73, 152, 395
BsnI GGCC 5 cut(s) 21, 44, 276, 285, 1098
Bso31I GGTCTC 1 cut(s) 431
Bsp119I TTCGAA 1 cut(s) 372
Bsp1286I GDGCHC 4 cut(s) 523, 539, 732, 980
Bsp1407I TGTACA 1 cut(s) 546
Bsp143I GATC 8 cut(s) 115, 223, 703, 793, 821, 1251, 1297, 1327
BspANI GGCC 5 cut(s) 21, 44, 276, 285, 1098
BspCNI CTCAG 1 cut(s) 763
BspFNI CGCG 2 cut(s) 468, 1134
BspLI GGNNCC 3 cut(s) 31, 168, 1201
BspMI ACCTGC 1 cut(s) 730
BspPI GGATC 4 cut(s) 218, 711, 1292, 1335
BspT104I TTCGAA 1 cut(s) 372
BspTNI GGTCTC 1 cut(s) 431
BsrBI CCGCTC 1 cut(s) 237
BsrDI GCAATG 1 cut(s) 1224
BsrFI RCCGGY 1 cut(s) 451
BsrGI TGTACA 1 cut(s) 546
BsrI ACTGG 4 cut(s) 45, 366, 737, 809
BssAI RCCGGY 1 cut(s) 451
BssECI CCNNGG 2 cut(s) 22, 1203
BssMI GATC 8 cut(s) 115, 223, 703, 793, 821, 1251, 1297, 1327
BssT1I CCWWGG 2 cut(s) 22, 1203
Bst2UI CCWGG 1 cut(s) 80
Bst4CI ACNGT 2 cut(s) 1171, 1267
BstAUI TGTACA 1 cut(s) 546
BstBAI YACGTR 1 cut(s) 190
BstBI TTCGAA 1 cut(s) 372
BstC8I GCNNGC 3 cut(s) 68, 566, 667
BstDEI CTNAG 3 cut(s) 322, 627, 771
BstFNI CGCG 2 cut(s) 468, 1134
BstHHI GCGC 1 cut(s) 470
BstKTI GATC 8 cut(s) 118, 226, 706, 796, 824, 1254, 1300, 1330
BstMAI GTCTC 5 cut(s) 65, 323, 431, 767, 1073
BstMBI GATC 8 cut(s) 115, 223, 703, 793, 821, 1251, 1297, 1327
BstMCI CGRYCG 1 cut(s) 952
BstMWI GCNNNNNNNGC 6 cut(s) 12, 15, 18, 282, 311, 348
BstNI CCWGG 1 cut(s) 80
BstPAI GACNNNNGTC 1 cut(s) 629
BstSCI CCNGG 3 cut(s) 78, 378, 946
BstSLI GKGCMC 3 cut(s) 539, 732, 980
BstUI CGCG 2 cut(s) 468, 1134
BstV1I GCAGC 1 cut(s) 18
BstV2I GAAGAC 2 cut(s) 138, 1154
BstX2I RGATCY 3 cut(s) 793, 821, 1327
BstYI RGATCY 3 cut(s) 793, 821, 1327
BsuRI GGCC 5 cut(s) 21, 44, 276, 285, 1098
BtsI GCAGTG 1 cut(s) 537
BtsIMutI CAGTG 4 cut(s) 38, 537, 730, 1263
BveI ACCTGC 1 cut(s) 730
Cac8I GCNNGC 3 cut(s) 68, 566, 667
CfoI GCGC 1 cut(s) 470
Cfr10I RCCGGY 1 cut(s) 451
Cfr13I GGNCC 4 cut(s) 29, 166, 631, 1097
CseI GACGC 1 cut(s) 47
Csp6I GTAC 1 cut(s) 547
CviAII CATG 2 cut(s) 500, 866
CviQI GTAC 1 cut(s) 547
DdeI CTNAG 3 cut(s) 322, 627, 771
DpnI GATC 8 cut(s) 117, 225, 705, 795, 823, 1253, 1299, 1329
DpnII GATC 8 cut(s) 115, 223, 703, 793, 821, 1251, 1297, 1327
EaeI YGGCCR 1 cut(s) 19
EciI GGCGGA 3 cut(s) 190, 242, 413
Ecl136II GAGCTC 1 cut(s) 521
Eco130I CCWWGG 2 cut(s) 22, 1203
Eco24I GRGCYC 1 cut(s) 523
Eco31I GGTCTC 1 cut(s) 431
Eco47I GGWCC 3 cut(s) 29, 166, 631
Eco53kI GAGCTC 1 cut(s) 521
Eco57I CTGAAG 2 cut(s) 31, 899
Eco72I CACGTG 1 cut(s) 190
EcoICRI GAGCTC 1 cut(s) 521
EcoO109I RGGNCCY 1 cut(s) 166
EcoRI GAATTC 1 cut(s) 834
EcoRII CCWGG 1 cut(s) 78
EcoT14I CCWWGG 2 cut(s) 22, 1203
EcoT38I GRGCYC 1 cut(s) 523
ErhI CCWWGG 2 cut(s) 22, 1203
Esp3I CGTCTC 3 cut(s) 65, 323, 767
FaeI CATG 2 cut(s) 503, 869
FalI AAGNNNNNCTT 2 cut(s) 59, 91
FaqI GGGAC 3 cut(s) 73, 152, 395
FatI CATG 2 cut(s) 499, 865
FauI CCCGC 2 cut(s) 118, 179
FauNDI CATATG 1 cut(s) 1294
Fnu4HI GCNGC 6 cut(s) 7, 10, 13, 16, 19, 156
FriOI GRGCYC 1 cut(s) 523
Fsp4HI GCNGC 6 cut(s) 7, 10, 13, 16, 19, 156
GlaI GCGC 1 cut(s) 469
GluI GCNGC 6 cut(s) 7, 10, 13, 16, 19, 156
GsaI CCCAGC 2 cut(s) 231, 729
GsuI CTGGAG 1 cut(s) 349
HaeIII GGCC 5 cut(s) 21, 44, 276, 285, 1098
HapII CCGG 5 cut(s) 282, 379, 452, 471, 948
HgaI GACGC 1 cut(s) 47
HhaI GCGC 1 cut(s) 470
Hin1II CATG 2 cut(s) 503, 869
Hin6I GCGC 1 cut(s) 468
HinP1I GCGC 1 cut(s) 468
HindIII AAGCTT 1 cut(s) 663
HinfI GANTC 6 cut(s) 86, 206, 266, 458, 607, 1127
HpaII CCGG 5 cut(s) 282, 379, 452, 471, 948
HphI GGTGA 3 cut(s) 64, 569, 953
Hpy166II GTNNAC 4 cut(s) 29, 537, 911, 944
Hpy188III TCNNGA 3 cut(s) 240, 1150, 1331
Hpy8I GTNNAC 4 cut(s) 29, 537, 911, 944
Hpy99I CGWCG 2 cut(s) 128, 146
HpyAV CCTTC 5 cut(s) 55, 85, 316, 502, 1135
HpyCH4III ACNGT 2 cut(s) 1171, 1267
HpyCH4IV ACGT 3 cut(s) 189, 332, 527
HpyCH4V TGCA 7 cut(s) 66, 406, 537, 542, 669, 740, 1009
HpyF10VI GCNNNNNNNGC 6 cut(s) 12, 15, 18, 282, 311, 348
HpyF3I CTNAG 3 cut(s) 322, 627, 771
HpySE526I ACGT 3 cut(s) 189, 332, 527
Hsp92II CATG 2 cut(s) 503, 869
HspAI GCGC 1 cut(s) 468
Kzo9I GATC 8 cut(s) 115, 223, 703, 793, 821, 1251, 1297, 1327
LmnI GCTCC 5 cut(s) 242, 252, 311, 368, 518
Lsp1109I GCAGC 1 cut(s) 18
LweI GCATC 4 cut(s) 45, 360, 393, 1269
MaeII ACGT 3 cut(s) 189, 332, 527
MaeIII GTNAC 2 cut(s) 479, 839
MalI GATC 8 cut(s) 117, 225, 705, 795, 823, 1253, 1299, 1329
MbiI CCGCTC 1 cut(s) 237
MboI GATC 8 cut(s) 115, 223, 703, 793, 821, 1251, 1297, 1327
MboII GAAGA 5 cut(s) 130, 143, 580, 1154, 1261
MflI RGATCY 3 cut(s) 793, 821, 1327
MhlI GDGCHC 4 cut(s) 523, 539, 732, 980
MluCI AATT 5 cut(s) 713, 834, 969, 1037, 1067
MlyI GAGTC 4 cut(s) 95, 200, 260, 467
MmeI TCCRAC 2 cut(s) 288, 414
MseI TTAA 6 cut(s) 642, 801, 857, 1064, 1155, 1272
MslI CAYNNNNRTG 2 cut(s) 530, 735
MspA1I CMGCKG 1 cut(s) 9
MspI CCGG 5 cut(s) 282, 379, 452, 471, 948
MspR9I CCNGG 3 cut(s) 80, 380, 948
MvaI CCWGG 1 cut(s) 80
MvnI CGCG 2 cut(s) 468, 1134
MwoI GCNNNNNNNGC 6 cut(s) 12, 15, 18, 282, 311, 348
NciI CCSGG 2 cut(s) 380, 948
NdeI CATATG 1 cut(s) 1294
NdeII GATC 8 cut(s) 115, 223, 703, 793, 821, 1251, 1297, 1327
NlaIII CATG 2 cut(s) 503, 869
NlaIV GGNNCC 3 cut(s) 31, 168, 1201
NspV TTCGAA 1 cut(s) 372
OliI CACNNNNGTG 2 cut(s) 530, 735
PcsI WCGNNNNNNNCGW 2 cut(s) 111, 186
PfeI GAWTC 2 cut(s) 607, 1127
PflMI CCANNNNNTGG 1 cut(s) 40
PfoI TCCNGGA 1 cut(s) 378
PkrI GCNGC 6 cut(s) 8, 11, 14, 17, 20, 157
PleI GAGTC 4 cut(s) 94, 200, 260, 466
PmaCI CACGTG 1 cut(s) 190
PmlI CACGTG 1 cut(s) 190
PpsI GAGTC 4 cut(s) 94, 200, 260, 466
Ppu21I YACGTR 1 cut(s) 190
PpuMI RGGWCCY 1 cut(s) 166
PshAI GACNNNNGTC 1 cut(s) 629
PshBI ATTAAT 1 cut(s) 1155
PsiI TTATAA 1 cut(s) 389
Psp124BI GAGCTC 1 cut(s) 523
Psp5II RGGWCCY 1 cut(s) 166
Psp6I CCWGG 1 cut(s) 78
PspCI CACGTG 1 cut(s) 190
PspFI CCCAGC 2 cut(s) 227, 725
PspGI CCWGG 1 cut(s) 78
PspN4I GGNNCC 3 cut(s) 31, 168, 1201
PspPI GGNCC 4 cut(s) 29, 166, 631, 1097
PspPPI RGGWCCY 1 cut(s) 166
PsuI RGATCY 3 cut(s) 793, 821, 1327
RsaI GTAC 1 cut(s) 548
RsaNI GTAC 1 cut(s) 547
RseI CAYNNNNRTG 2 cut(s) 530, 735
SacI GAGCTC 1 cut(s) 523
SaqAI TTAA 6 cut(s) 642, 801, 857, 1064, 1155, 1272
SatI GCNGC 6 cut(s) 7, 10, 13, 16, 19, 156
Sau3AI GATC 8 cut(s) 115, 223, 703, 793, 821, 1251, 1297, 1327
Sau96I GGNCC 4 cut(s) 29, 166, 631, 1097
SchI GAGTC 4 cut(s) 95, 200, 260, 467
ScrFI CCNGG 3 cut(s) 80, 380, 948
SduI GDGCHC 4 cut(s) 523, 539, 732, 980
SfaNI GCATC 4 cut(s) 45, 360, 393, 1269
SfiI GGCCNNNNNGGCC 1 cut(s) 282
SfuI TTCGAA 1 cut(s) 372
SinI GGWCC 3 cut(s) 29, 166, 631
SmiMI CAYNNNNRTG 2 cut(s) 530, 735
Sse9I AATT 5 cut(s) 713, 834, 969, 1037, 1067
SspI AATATT 1 cut(s) 901
SstI GAGCTC 1 cut(s) 523
StyD4I CCNGG 3 cut(s) 78, 378, 946
StyI CCWWGG 2 cut(s) 22, 1203
TaaI ACNGT 2 cut(s) 1171, 1267
TaiI ACGT 3 cut(s) 192, 335, 530
TaqI TCGA 4 cut(s) 105, 141, 180, 372
TasI AATT 5 cut(s) 713, 834, 969, 1037, 1067
TatI WGTACW 1 cut(s) 546
TauI GCSGC 5 cut(s) 12, 15, 18, 21, 158
TfiI GAWTC 2 cut(s) 607, 1127
Tru1I TTAA 6 cut(s) 642, 801, 857, 1064, 1155, 1272
Tru9I TTAA 6 cut(s) 642, 801, 857, 1064, 1155, 1272
TscAI CASTG 4 cut(s) 45, 544, 737, 1270
TseI GCWGC 1 cut(s) 6
TspDTI ATGAA 4 cut(s) 478, 586, 774, 1202
TspGWI ACGGA 1 cut(s) 623
TspRI CASTG 4 cut(s) 45, 544, 737, 1270
Van91I CCANNNNNTGG 1 cut(s) 40
VneI GTGCAC 1 cut(s) 535
VpaK11BI GGWCC 3 cut(s) 29, 166, 631
VspI ATTAAT 1 cut(s) 1155
XapI RAATTY 2 cut(s) 713, 834
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.