Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0009422

Physical Location & Seq

Genomic Coordinates Reverse (-)

29767928 .. 29771236

Gene Structure 3309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g29320.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGAGCAGCGGTCAAGGTGGACCCCACTCCCTGGCCTTCCGGGTGATGAGGCTGTGCAAGCCCTCATTCCAGGTGGACCCCATTTCCCTCCTTCTCGACCCCGCCGATCTCGTCGTCGGCGAGGACATTTTCGACGACCCGATGGCAGCCGCGCAACTCCCCCGCCTCCTCGACGTCCACGACTCCTTGAACCCCTCCTCATCCGCCTCCTCTGACTCCTCGGATCTCACCTACCGCACCCGGTTCCTCCTCCACCACCCCTCCGACTCCATTGGCCTCTCTGGCCTCCTCGTCCTCCCCCAAGCCTTCGGAGCAATATATTTAGGGGAGACATTTTGTAGCTATATTAGCATCAATAACAGCTCCAATTTCGAAGTCAAGGACATTATAATCAAGTCGGAAATGCAAACAGAAGGGCAGAGACTTGTGCTGCTGGACACGTCGAATTCGCCAGTTGAATCCATACGTGCAGGCGGGCGTTATGACTTCATTGTTGAACATGATGTCAAGGAACTCGGAGCTCACACGTTGGTTTGCACTGCATTGTACTATGACGGTGATGGTGAGCGTAAATATCTACCACAGTTCTTCAAATTCATTGTTTCCAATCCGCTTTCTGTCAGGACGAAGGTCCTCGTTGTAAAGGAACTCACGCTTTTAGAAGCTTGCATCGAGAATCATACCAAGTCAAATCTTTTTATGGAACAAGTTGAGTTTGAGCCTGCTCAGCATTGGAGTGCAAAAATCCTAAAATCAGACGAACACCATTCCGAAAAGAATTCTCAAATAAGAGAGATATTTAAGCCACCAATTCTCATCAAATCTGGCGGAGGAATTCATAACTATCTTTATCAGTTAATATCACATGGTTCTACCCACGGGAAAGTTGAGGGAAGCAATATTCTTGGTAAACTTCAGATAACATGGCGCACTAATCTGGGCGAACCTGGTCGCCTACAAACACAGCAAATTATGGGAACTCCCATAACACGAAAGGATGTTGAGTTGCATGTTGTGGAGGTGCCATCTGCCATCAAGTTGGAAAGACCCTTTTCGCTACACTTGAATTTAGCAAATGAGACAGATGAGGAACTTGGCCCTTTCGAAGTTTGGTTATCACAAGATGATTCACGTGAGGAGAAGGTGGTTGTGATTAATGGTCTTCAAACTGTGGTTTTGCCGAGGGTTGAGGCGTTTGGTTCCACAAATTTCAATCTGAACCTGATTGCCACTAAACTCGGAGTTCAGAGGATCACGGGCATTACTGTGTTTAACATAAGAGAGAAAAAGTCATACGACCCGTTGCCAGATATGGAGATTTTTGTGGATCTCGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF974

Protein Analysis

446

Amino Acids

49.66

Weight (kDa)

5.36

Isoelectric Point (pI)

32.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47960
fragaria_vesca	FvH4_3g04870 FvH4_3g04870
malus_domestica	MD05G1316100.v1.1 MD10G1296600.v1.1
prunus_persica	Prupe.4G044000_v2.0.a1
pyrus_communis	pycom05g29320 pycom10g24940
rosa_chinensis	RchiOBHm_Chr5g0008031
rosa_laevigata	RLG00000031529
rosa_multiflora	Rmu_co8104876.1_g000001 Rmu_sc0007348.1_g000002
rosa_roxburghii	Rroxscaffold_1G00068440
rosa_rugosa	Rorug04G0432700 Rorug04G0432800
rosa_samantha	Rh5AG060800 Rh5BG057600 Rh5CG067700 Rh5DG056800 Rh7AG388200 Rh7CG407500
rosa_wichuraiana	Rw5G005980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	389
AatII	GACGTC	1 cut(s)	177
AccB1I	GGYRCC	1 cut(s)	1021
AccB7I	CCANNNNNTGG	1 cut(s)	31
AccII	CGCG	1 cut(s)	152
AciI	CCGC	9 cut(s)	9, 102, 150, 163, 204, 235, 474, 611, 828
AclWI	GGATC	3 cut(s)	231, 1259, 1335
AcsI	RAATTY	6 cut(s)	445, 593, 778, 834, 1066, 1207
AcuI	CTGAAG	1 cut(s)	899
AcvI	CACGTG	1 cut(s)	1133
AcyI	GRCGYC	1 cut(s)	174
AfaI	GTAC	1 cut(s)	548
AfiI	CCNNNNNNNGG	1 cut(s)	31
AflIII	ACRYGT	2 cut(s)	438, 525
AgsI	TTSAA	7 cut(s)	190, 458, 497, 592, 1066, 1166, 1213
AjiI	CACGTC	1 cut(s)	441
AjnI	CCWGG	3 cut(s)	30, 69, 946
AluBI	AGCT	4 cut(s)	342, 363, 521, 665
AluI	AGCT	4 cut(s)	342, 363, 521, 665
Alw21I	GWGCWC	1 cut(s)	523
Alw26I	GTCTC	3 cut(s)	323, 415, 1073
AlwI	GGATC	3 cut(s)	231, 1259, 1335
AoxI	GGCC	4 cut(s)	33, 274, 283, 1096
ApeKI	GCWGC	3 cut(s)	6, 146, 430
ApoI	RAATTY	6 cut(s)	445, 593, 778, 834, 1066, 1207
AseI	ATTAAT	1 cut(s)	1155
AspLEI	GCGC	2 cut(s)	154, 930
AspS9I	GGNCC	4 cut(s)	20, 76, 631, 1097
AsuC2I	CCSGG	2 cut(s)	41, 241
AsuHPI	GGTGA	4 cut(s)	55, 220, 569, 575
AsuII	TTCGAA	2 cut(s)	372, 1104
AvaII	GGWCC	3 cut(s)	20, 76, 631
BanI	GGYRCC	1 cut(s)	1021
BanII	GRGCYC	1 cut(s)	523
BbrPI	CACGTG	1 cut(s)	1133
BbsI	GAAGAC	1 cut(s)	1154
Bbv12I	GWGCWC	1 cut(s)	523
BbvI	GCAGC	3 cut(s)	18, 158, 417
BccI	CCATC	4 cut(s)	136, 554, 1033, 1040
BciT130I	CCWGG	3 cut(s)	32, 71, 948
BcnI	CCSGG	2 cut(s)	41, 241
BcoDI	GTCTC	3 cut(s)	323, 415, 1073
BglI	GCCNNNNNGGC	1 cut(s)	282
BisI	GCNGC	4 cut(s)	7, 147, 150, 431
BlpI	GCTNAGC	1 cut(s)	726
BlsI	GCNGC	4 cut(s)	8, 148, 151, 432
Bme1390I	CCNGG	5 cut(s)	32, 41, 71, 241, 948
Bme18I	GGWCC	3 cut(s)	20, 76, 631
BmgBI	CACGTC	1 cut(s)	441
BmgT120I	GGNCC	4 cut(s)	20, 76, 631, 1097
BmiI	GGNNCC	5 cut(s)	22, 78, 245, 1023, 1201
BmrFI	CCNGG	5 cut(s)	32, 41, 71, 241, 948
BmsI	GCATC	2 cut(s)	360, 678
BoxI	GACNNNNGTC	1 cut(s)	629
BpiI	GAAGAC	1 cut(s)	1154
Bpu1102I	GCTNAGC	1 cut(s)	726
Bpu14I	TTCGAA	2 cut(s)	372, 1104
BpuMI	CCSGG	2 cut(s)	41, 241
BsaAI	YACGTR	2 cut(s)	467, 1133
BsaHI	GRCGYC	1 cut(s)	174
BsaJI	CCNNGG	4 cut(s)	30, 219, 877, 1181
BsaXI	ACNNNNNCTCC	2 cut(s)	245, 275
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
Bse1I	ACTGG	1 cut(s)	452
BseBI	CCWGG	3 cut(s)	32, 71, 948
BseDI	CCNNGG	4 cut(s)	30, 219, 877, 1181
BseGI	GGATG	2 cut(s)	200, 1003
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseMII	CTCAG	1 cut(s)	740
BseNI	ACTGG	1 cut(s)	452
BseRI	GAGGAG	7 cut(s)	158, 187, 199, 208, 239, 278, 1151
BseXI	GCAGC	3 cut(s)	18, 158, 417
BsgI	GTGCAG	1 cut(s)	489
Bsh1236I	CGCG	1 cut(s)	152
BshFI	GGCC	4 cut(s)	35, 276, 285, 1098
BshNI	GGYRCC	1 cut(s)	1021
BsiHKAI	GWGCWC	1 cut(s)	523
BsiSI	CCGG	2 cut(s)	40, 241
BslI	CCNNNNNNNGG	1 cut(s)	31
BsmAI	GTCTC	3 cut(s)	323, 415, 1073
BsnI	GGCC	4 cut(s)	35, 276, 285, 1098
Bsp119I	TTCGAA	2 cut(s)	372, 1104
Bsp1286I	GDGCHC	1 cut(s)	523
Bsp143I	GATC	4 cut(s)	106, 223, 1251, 1327
Bsp1720I	GCTNAGC	1 cut(s)	726
BspACI	CCGC	9 cut(s)	9, 102, 150, 163, 204, 235, 474, 611, 828
BspANI	GGCC	4 cut(s)	35, 276, 285, 1098
BspCNI	CTCAG	1 cut(s)	739
BspFNI	CGCG	1 cut(s)	152
BspLI	GGNNCC	5 cut(s)	22, 78, 245, 1023, 1201
BspPI	GGATC	3 cut(s)	231, 1259, 1335
BspT104I	TTCGAA	2 cut(s)	372, 1104
BspT107I	GGYRCC	1 cut(s)	1021
BsrI	ACTGG	1 cut(s)	452
BssECI	CCNNGG	4 cut(s)	30, 219, 877, 1181
BssMI	GATC	4 cut(s)	106, 223, 1251, 1327
BssNI	GRCGYC	1 cut(s)	174
Bst2UI	CCWGG	3 cut(s)	32, 71, 948
Bst4CI	ACNGT	4 cut(s)	557, 585, 1171, 1267
BstACI	GRCGYC	1 cut(s)	174
BstBAI	YACGTR	2 cut(s)	467, 1133
BstBI	TTCGAA	2 cut(s)	372, 1104
BstC8I	GCNNGC	5 cut(s)	59, 472, 476, 667, 723
BstDEI	CTNAG	1 cut(s)	726
BstDSI	CCRYGG	1 cut(s)	877
BstF5I	GGATG	2 cut(s)	200, 1003
BstFNI	CGCG	1 cut(s)	152
BstHHI	GCGC	2 cut(s)	154, 930
BstKTI	GATC	4 cut(s)	109, 226, 1254, 1330
BstMAI	GTCTC	3 cut(s)	323, 415, 1073
BstMBI	GATC	4 cut(s)	106, 223, 1251, 1327
BstMWI	GCNNNNNNNGC	5 cut(s)	58, 282, 311, 348, 727
BstNI	CCWGG	3 cut(s)	32, 71, 948
BstNSI	RCATGY	1 cut(s)	1013
BstPAI	GACNNNNGTC	1 cut(s)	629
BstSCI	CCNGG	5 cut(s)	30, 39, 69, 239, 946
BstUI	CGCG	1 cut(s)	152
BstV1I	GCAGC	3 cut(s)	18, 158, 417
BstV2I	GAAGAC	1 cut(s)	1154
BstX2I	RGATCY	2 cut(s)	223, 1327
BstXI	CCANNNNNNTGG	1 cut(s)	1039
BstYI	RGATCY	2 cut(s)	223, 1327
BsuRI	GGCC	4 cut(s)	35, 276, 285, 1098
BtgI	CCRYGG	1 cut(s)	877
BtrI	CACGTC	1 cut(s)	441
BtsCI	GGATG	2 cut(s)	200, 1003
BtsI	GCAGTG	1 cut(s)	537
BtsIMutI	CAGTG	1 cut(s)	537
Cac8I	GCNNGC	5 cut(s)	59, 472, 476, 667, 723
CfoI	GCGC	2 cut(s)	154, 930
Cfr13I	GGNCC	4 cut(s)	20, 76, 631, 1097
CsiI	ACCWGGT	1 cut(s)	946
Csp6I	GTAC	1 cut(s)	547
CviAII	CATG	4 cut(s)	500, 866, 924, 1010
CviQI	GTAC	1 cut(s)	547
DdeI	CTNAG	1 cut(s)	726
DpnI	GATC	4 cut(s)	108, 225, 1253, 1329
DpnII	GATC	4 cut(s)	106, 223, 1251, 1327
EciI	GGCGGA	2 cut(s)	193, 843
Ecl136II	GAGCTC	1 cut(s)	521
Eco24I	GRGCYC	1 cut(s)	523
Eco47I	GGWCC	3 cut(s)	20, 76, 631
Eco53kI	GAGCTC	1 cut(s)	521
Eco57I	CTGAAG	1 cut(s)	899
Eco72I	CACGTG	1 cut(s)	1133
EcoICRI	GAGCTC	1 cut(s)	521
EcoO109I	RGGNCCY	1 cut(s)	631
EcoRI	GAATTC	3 cut(s)	445, 778, 834
EcoRII	CCWGG	3 cut(s)	30, 69, 946
EcoT38I	GRGCYC	1 cut(s)	523
FaeI	CATG	4 cut(s)	503, 869, 927, 1013
FatI	CATG	4 cut(s)	499, 865, 923, 1009
FauI	CCCGC	3 cut(s)	109, 170, 467
Fnu4HI	GCNGC	4 cut(s)	7, 147, 150, 431
FokI	GGATG	2 cut(s)	187, 1010
FriOI	GRGCYC	1 cut(s)	523
Fsp4HI	GCNGC	4 cut(s)	7, 147, 150, 431
GlaI	GCGC	2 cut(s)	153, 929
GluI	GCNGC	4 cut(s)	7, 147, 150, 431
HaeIII	GGCC	4 cut(s)	35, 276, 285, 1098
HapII	CCGG	2 cut(s)	40, 241
HhaI	GCGC	2 cut(s)	154, 930
Hin1I	GRCGYC	1 cut(s)	174
Hin1II	CATG	4 cut(s)	503, 869, 927, 1013
Hin6I	GCGC	2 cut(s)	152, 928
HinP1I	GCGC	2 cut(s)	152, 928
HindIII	AAGCTT	1 cut(s)	663
HinfI	GANTC	6 cut(s)	182, 215, 266, 458, 676, 1127
HpaII	CCGG	2 cut(s)	40, 241
HphI	GGTGA	4 cut(s)	55, 220, 569, 575
Hpy166II	GTNNAC	4 cut(s)	20, 76, 178, 911
Hpy188III	TCNNGA	4 cut(s)	95, 622, 673, 1331
Hpy8I	GTNNAC	4 cut(s)	20, 76, 178, 911
Hpy99I	CGWCG	5 cut(s)	116, 119, 137, 176, 445
HpyAV	CCTTC	6 cut(s)	46, 101, 316, 407, 622, 1135
HpyCH4III	ACNGT	4 cut(s)	557, 585, 1171, 1267
HpyCH4IV	ACGT	5 cut(s)	174, 440, 466, 527, 1132
HpyCH4V	TGCA	8 cut(s)	57, 406, 470, 537, 542, 669, 740, 1009
HpyF10VI	GCNNNNNNNGC	5 cut(s)	58, 282, 311, 348, 727
HpyF3I	CTNAG	1 cut(s)	726
HpySE526I	ACGT	5 cut(s)	174, 440, 466, 527, 1132
Hsp92I	GRCGYC	1 cut(s)	174
Hsp92II	CATG	4 cut(s)	503, 869, 927, 1013
HspAI	GCGC	2 cut(s)	152, 928
Kzo9I	GATC	4 cut(s)	106, 223, 1251, 1327
LmnI	GCTCC	3 cut(s)	311, 368, 518
Lsp1109I	GCAGC	3 cut(s)	18, 158, 417
LweI	GCATC	2 cut(s)	360, 678
MabI	ACCWGGT	1 cut(s)	946
MaeII	ACGT	5 cut(s)	174, 440, 466, 527, 1132
MalI	GATC	4 cut(s)	108, 225, 1253, 1329
MboI	GATC	4 cut(s)	106, 223, 1251, 1327
MboII	GAAGA	2 cut(s)	580, 1154
MflI	RGATCY	2 cut(s)	223, 1327
MhlI	GDGCHC	1 cut(s)	523
MluCI	AATT	9 cut(s)	367, 445, 593, 778, 810, 834, 969, 1066, 1207
MlyI	GAGTC	3 cut(s)	176, 209, 260
MmeI	TCCRAC	3 cut(s)	288, 378, 1020
MseI	TTAA	4 cut(s)	801, 857, 1155, 1272
MslI	CAYNNNNRTG	2 cut(s)	735, 1265
MspA1I	CMGCKG	1 cut(s)	9
MspI	CCGG	2 cut(s)	40, 241
MspR9I	CCNGG	5 cut(s)	32, 41, 71, 241, 948
MvaI	CCWGG	3 cut(s)	32, 71, 948
MvnI	CGCG	1 cut(s)	152
MwoI	GCNNNNNNNGC	5 cut(s)	58, 282, 311, 348, 727
NciI	CCSGG	2 cut(s)	41, 241
NdeII	GATC	4 cut(s)	106, 223, 1251, 1327
NlaIII	CATG	4 cut(s)	503, 869, 927, 1013
NlaIV	GGNNCC	5 cut(s)	22, 78, 245, 1023, 1201
NmeAIII	GCCGAG	1 cut(s)	1206
NspI	RCATGY	1 cut(s)	1013
NspV	TTCGAA	2 cut(s)	372, 1104
PcsI	WCGNNNNNNNCGW	3 cut(s)	102, 117, 177
PfeI	GAWTC	3 cut(s)	458, 676, 1127
PflMI	CCANNNNNTGG	1 cut(s)	31
PkrI	GCNGC	4 cut(s)	8, 148, 151, 432
PleI	GAGTC	3 cut(s)	176, 209, 260
PmaCI	CACGTG	1 cut(s)	1133
PmlI	CACGTG	1 cut(s)	1133
PpsI	GAGTC	3 cut(s)	176, 209, 260
Ppu21I	YACGTR	2 cut(s)	467, 1133
PpuMI	RGGWCCY	1 cut(s)	631
PshAI	GACNNNNGTC	1 cut(s)	629
PshBI	ATTAAT	1 cut(s)	1155
PsiI	TTATAA	1 cut(s)	389
Psp124BI	GAGCTC	1 cut(s)	523
Psp5II	RGGWCCY	1 cut(s)	631
Psp6I	CCWGG	3 cut(s)	30, 69, 946
PspCI	CACGTG	1 cut(s)	1133
PspGI	CCWGG	3 cut(s)	30, 69, 946
PspN4I	GGNNCC	5 cut(s)	22, 78, 245, 1023, 1201
PspPI	GGNCC	4 cut(s)	20, 76, 631, 1097
PspPPI	RGGWCCY	1 cut(s)	631
PsuI	RGATCY	2 cut(s)	223, 1327
RsaI	GTAC	1 cut(s)	548
RsaNI	GTAC	1 cut(s)	547
RseI	CAYNNNNRTG	2 cut(s)	735, 1265
SacI	GAGCTC	1 cut(s)	523
SaqAI	TTAA	4 cut(s)	801, 857, 1155, 1272
SatI	GCNGC	4 cut(s)	7, 147, 150, 431
Sau3AI	GATC	4 cut(s)	106, 223, 1251, 1327
Sau96I	GGNCC	4 cut(s)	20, 76, 631, 1097
SchI	GAGTC	3 cut(s)	176, 209, 260
ScrFI	CCNGG	5 cut(s)	32, 41, 71, 241, 948
SduI	GDGCHC	1 cut(s)	523
SexAI	ACCWGGT	1 cut(s)	946
SfaNI	GCATC	2 cut(s)	360, 678
SfiI	GGCCNNNNNGGCC	1 cut(s)	282
SfuI	TTCGAA	2 cut(s)	372, 1104
SinI	GGWCC	3 cut(s)	20, 76, 631
SmiMI	CAYNNNNRTG	2 cut(s)	735, 1265
Sse9I	AATT	9 cut(s)	367, 445, 593, 778, 810, 834, 969, 1066, 1207
SsiI	CCGC	9 cut(s)	9, 102, 150, 163, 204, 235, 474, 611, 828
SspI	AATATT	1 cut(s)	901
SstI	GAGCTC	1 cut(s)	523
StyD4I	CCNGG	5 cut(s)	30, 39, 69, 239, 946
TaaI	ACNGT	4 cut(s)	557, 585, 1171, 1267
TaiI	ACGT	5 cut(s)	177, 443, 469, 530, 1135
TaqI	TCGA	8 cut(s)	96, 132, 171, 372, 443, 672, 1104, 1332
TasI	AATT	9 cut(s)	367, 445, 593, 778, 810, 834, 969, 1066, 1207
TatI	WGTACW	1 cut(s)	546
TauI	GCSGC	1 cut(s)	152
TfiI	GAWTC	3 cut(s)	458, 676, 1127
Tru1I	TTAA	4 cut(s)	801, 857, 1155, 1272
Tru9I	TTAA	4 cut(s)	801, 857, 1155, 1272
TscAI	CASTG	1 cut(s)	544
TseI	GCWGC	3 cut(s)	6, 146, 430
TspDTI	ATGAA	3 cut(s)	478, 586, 827
TspRI	CASTG	1 cut(s)	544
Van91I	CCANNNNNTGG	1 cut(s)	31
VpaK11BI	GGWCC	3 cut(s)	20, 76, 631
VspI	ATTAAT	1 cut(s)	1155
XapI	RAATTY	6 cut(s)	445, 593, 778, 834, 1066, 1207
XceI	RCATGY	1 cut(s)	1013
ZraI	GACGTC	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.