Rorug04G0432800

Trafficking protein particle complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0009422
Physical Location & Seq
Forward (+)
59093962 .. 59095713
1752 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0432800.1

Sequence Viewer

Length: 1752 bp
ATGGATGCCTTGTCTTCTTCTTTCCTCTCCACATTCCCCACTCGATCTTCAACAACAGCACCAAAACTCCCCCCAGCCAAATCCCTCAACATCTCCTCTGTTAGAATTGAAGAAAGACCCACAACCCAAACACCTCCAAAAACCACAACACCACCAAAACAGACTCCTCCTCCTCCTCCATCCTACTCCTCACCACCACCCACAAAACCTAATGCACCAGCACTTCCCGCTGTGATCTTCAACCTCTTCGACGACTTCATCAACAACTTCGTCGACCCGCCGGTCCGGTCTTCAGTCGACCCTAAACGCGTCCTCTCCGGTAACTTCGCTCCCGTAACTGAACTTCCACCAACCGAATGTCAAGTAATCAAAGGCTCATTACCTTCCTGTCTCGACGGCGCTTACATCCGCAATGGCCCCAACCCTCAGTACCTCCCGCGCGGGCCCTACCACCTCTTCGACGGCGACGGCATGCTCCACTCCATCAGAATCTCCCAAGGCCGCGCCGTCCTCTGCAGCCGCTACGTCAAGACCTACAAGTACACCGTCGAGCGCGACGCCGGCTTCCCTCTCCTCCCCAACGTCTTCTCCGGCTTCAACGGCCTCACCGCCTCCGCGACACGTGGCGCCCTCTCCGCTGCCCGCGTGGCCTCGGGGCTGTACAATCCCGCCAACGGCATTGGCAACGCGAACACGAGCTTGGCGTTTTTCGGCGACCGTCTCTACGCGCTCGCCGAGTCTGATCTTCCTTACGCCGTGCGGTTGACGGCCGACGGCGACGTCGACACCCTGGGACGGAACGACTTTAACGGCGAGCTGTTCATGAGCATGACGGCGCATCCGAAGATCGATCCAGACACCGGCGAGACCTTCGCTTTCCGTTACGGCCCGGTGCCGCCGTTTCTCACTTACTTCCGGTTCGACCCGACCGGAGCGAAACAACCCGACGTGCCGGTGTTCTCCCTGACCAGTCCTTCTATGCTCCACGACTTCGCGATCACTAAAAAGTACGCGGTGTTCACCGACATTCAGATCGGAATGAACCCGATGGAGATGATCGGCGGCGGATCTCCGGTGGGGTTGGACGCTTCTAAAGTATCTAGAATAGGAGTAATTCCGAAATACGCGAAGGACGATTCCGAGATGAGGTGGTTTGAGGTGCCCGGGTTCAACATCATGCACGCGGTTAACGCATGGGACGAAGACGACGCCGTTGTGATGGTGGCGCCGAACATCTTATCGGCGGAGCACACTCTCGAGAGAATGGAGCTCGTCCACGCGCTCGTGGAGAAAGTGAGGATCGATCTCAAGACCGGGATCGTTTCGCGCCAACCGATCTCGACCCGGAATCTGGACTTCGCGGTGATAAACCCGGCTTACCAAGGGAAAAAGAACCGGTTCGTGTACGCGGGGGTCGGGGATCCGATGCCGAAGATATCGGGAGTGGTGAAGCTCGACGTGTCGGGTGATGAGCACAAGGAGAGCATAGTGGCGAGCAGGATGTACGGTCAGGGTTGCTTCGGGGGAGAGCCGTTTTTCGTGGCGAGGGAGCCGGAGAATCCGGAGGCGGAGGAGGACGACGGGTACGTGGTGTCGTATGTTCATGATGAGAAGACGGGAGAGTCAAGGTTTTTGGTGATGGACGCCAAGTCGTCTGAGCTGGAAACCGTGGCGGAAGTTAAGCTGCCGCGGCGGGTGCCGTACGGTTTTCACGGACTGTTTGTGAGGGAGAGTGACCTGAAGAAGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF974

Protein Analysis

583

Amino Acids

63.74

Weight (kDa)

5.79

Isoelectric Point (pI)

44.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPE65 PF03055 110 - 575 1.3e-123 Retinal pigment epithelial membrane protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 281, 779, 1621
AatII GACGTC 1 cut(s) 783
AccB1I GGYRCC 5 cut(s) 626, 892, 1159, 1225, 1696
AccI GTMKAC 3 cut(s) 273, 297, 783
AccIII TCCGGA 1 cut(s) 1561
AclWI GGATC 6 cut(s) 845, 1075, 1307, 1325, 1415, 1428
AcoI YGGCCR 1 cut(s) 768
AcuI CTGAAG 1 cut(s) 276
AcvI CACGTG 1 cut(s) 623
AcyI GRCGYC 6 cut(s) 558, 627, 780, 1209, 1226, 1644
AfaI GTAC 8 cut(s) 431, 542, 662, 1010, 1406, 1505, 1586, 1703
AfiI CCNNNNNNNGG 5 cut(s) 674, 795, 860, 1146, 1351
AflIII ACRYGT 3 cut(s) 307, 620, 1458
AgeI ACCGGT 1 cut(s) 1395
AgsI TTSAA 5 cut(s) 51, 110, 241, 598, 1171
AhdI GACNNNNNGTC 1 cut(s) 1648
AjiI CACGTC 2 cut(s) 949, 1459
AjnI CCWGG 1 cut(s) 789
AjuI GAANNNNNNNTTGG 2 cut(s) 683, 715
AluBI AGCT 6 cut(s) 699, 817, 1270, 1453, 1660, 1684
AluI AGCT 6 cut(s) 699, 817, 1270, 1453, 1660, 1684
Alw21I GWGCWC 3 cut(s) 1251, 1272, 1476
Alw26I GTCTC 3 cut(s) 395, 725, 860
AlwI GGATC 6 cut(s) 845, 1075, 1307, 1325, 1415, 1428
Ama87I CYCGRG 3 cut(s) 652, 1163, 1256
Aor13HI TCCGGA 1 cut(s) 1561
AoxI GGCC 7 cut(s) 415, 443, 499, 601, 648, 768, 886
ApaI GGGCCC 1 cut(s) 447
ApeKI GCWGC 3 cut(s) 516, 638, 1684
AsiGI ACCGGT 1 cut(s) 1395
Asp700I GAANNNNTTC 1 cut(s) 1397
AspS9I GGNCC 5 cut(s) 283, 416, 443, 444, 887
AsuC2I CCSGG 6 cut(s) 890, 1164, 1165, 1315, 1345, 1373
AsuHPI GGTGA 7 cut(s) 183, 598, 1012, 1375, 1459, 1478, 1648
AvaI CYCGRG 3 cut(s) 652, 1163, 1256
AvaII GGWCC 1 cut(s) 283
BaeGI GKGCMC 2 cut(s) 447, 1164
BamHI GGATCC 1 cut(s) 1420
BanI GGYRCC 5 cut(s) 626, 892, 1159, 1225, 1696
BanII GRGCYC 2 cut(s) 447, 1272
BarI GAAGNNNNNNTAC 2 cut(s) 327, 359
BauI CACGAG 2 cut(s) 694, 1283
BbrPI CACGTG 1 cut(s) 623
BbsI GAAGAC 5 cut(s) 6, 282, 577, 1209, 1619
Bbv12I GWGCWC 3 cut(s) 1251, 1272, 1476
BbvI GCAGC 3 cut(s) 528, 625, 1671
BccI CCATC 5 cut(s) 187, 491, 1042, 1213, 1633
BciT130I CCWGG 1 cut(s) 791
BcnI CCSGG 6 cut(s) 890, 1164, 1165, 1315, 1345, 1373
BcoDI GTCTC 3 cut(s) 395, 725, 860
BfaI CTAG 1 cut(s) 1101
BfmI CTRYAG 1 cut(s) 514
BfoI RGCGCY 3 cut(s) 402, 630, 1229
BglI GCCNNNNNGGC 1 cut(s) 647
BisI GCNGC 9 cut(s) 502, 517, 520, 639, 896, 1063, 1685, 1688, 1691
BlsI GCNGC 9 cut(s) 503, 518, 521, 640, 897, 1064, 1686, 1689, 1692
Bme1390I CCNGG 7 cut(s) 791, 890, 1164, 1165, 1315, 1345, 1373
Bme18I GGWCC 1 cut(s) 283
BmeRI GACNNNNNGTC 1 cut(s) 1648
BmeT110I CYCGRG 3 cut(s) 652, 1163, 1256
BmgBI CACGTC 2 cut(s) 949, 1459
BmgT120I GGNCC 5 cut(s) 283, 416, 443, 444, 887
BmiI GGNNCC 9 cut(s) 418, 445, 628, 894, 1161, 1227, 1422, 1551, 1698
BmrFI CCNGG 7 cut(s) 791, 890, 1164, 1165, 1315, 1345, 1373
BmsI GCATC 2 cut(s) 847, 1416
BpiI GAAGAC 5 cut(s) 6, 282, 577, 1209, 1619
BpuEI CTTGAG 1 cut(s) 1292
BpuMI CCSGG 6 cut(s) 890, 1164, 1165, 1315, 1345, 1373
Bsa29I ATCGAT 2 cut(s) 849, 1302
BsaAI YACGTR 2 cut(s) 623, 1588
BsaHI GRCGYC 6 cut(s) 558, 627, 780, 1209, 1226, 1644
BsaI GGTCTC 1 cut(s) 860
BsaJI CCNNGG 8 cut(s) 496, 651, 789, 790, 1163, 1381, 1668, 1688
BsaWI WCCGGW 7 cut(s) 285, 317, 915, 929, 1072, 1395, 1561
BsaXI ACNNNNNCTCC 6 cut(s) 51, 81, 154, 184, 572, 602
Bsc4I CCNNNNNNNGG 5 cut(s) 674, 795, 860, 1146, 1351
Bse118I RCCGGY 5 cut(s) 280, 560, 860, 952, 1395
Bse1I ACTGG 1 cut(s) 969
Bse3DI GCAATG 1 cut(s) 418
BseAI TCCGGA 1 cut(s) 1561
BseBI CCWGG 1 cut(s) 791
BseCI ATCGAT 2 cut(s) 849, 1302
BseDI CCNNGG 8 cut(s) 496, 651, 789, 790, 1163, 1381, 1668, 1688
BseGI GGATG 5 cut(s) 10, 179, 405, 838, 1506
BseLI CCNNNNNNNGG 5 cut(s) 674, 795, 860, 1146, 1351
BseMI GCAATG 1 cut(s) 418
BseMII CTCAG 2 cut(s) 440, 1647
BseNI ACTGG 1 cut(s) 969
BseRI GAGGAG 8 cut(s) 85, 156, 159, 162, 165, 178, 563, 1586
BseSI GKGCMC 2 cut(s) 447, 1164
BseX3I CGGCCG 1 cut(s) 768
BseXI GCAGC 3 cut(s) 528, 625, 1671
BseYI CCCAGC 1 cut(s) 73
Bsh1285I CGRYCG 3 cut(s) 718, 771, 930
BshFI GGCC 7 cut(s) 417, 445, 501, 603, 650, 770, 888
BshNI GGYRCC 5 cut(s) 626, 892, 1159, 1225, 1696
BshTI ACCGGT 1 cut(s) 1395
BshVI ATCGAT 2 cut(s) 849, 1302
BsiEI CGRYCG 3 cut(s) 718, 771, 930
BsiHKAI GWGCWC 3 cut(s) 1251, 1272, 1476
BsiHKCI CYCGRG 3 cut(s) 652, 1163, 1256
BsiWI CGTACG 1 cut(s) 1701
BslFI GGGAC 2 cut(s) 807, 1211
BslI CCNNNNNNNGG 5 cut(s) 674, 795, 860, 1146, 1351
BsmAI GTCTC 3 cut(s) 395, 725, 860
BsmBI CGTCTC 1 cut(s) 725
BsmFI GGGAC 2 cut(s) 807, 1211
BsnI GGCC 7 cut(s) 417, 445, 501, 603, 650, 770, 888
Bso31I GGTCTC 1 cut(s) 860
BsoBI CYCGRG 3 cut(s) 652, 1163, 1256
Bsp120I GGGCCC 1 cut(s) 443
Bsp1286I GDGCHC 5 cut(s) 447, 1164, 1251, 1272, 1476
Bsp13I TCCGGA 1 cut(s) 1561
Bsp1407I TGTACA 1 cut(s) 660
Bsp68I TCGCGA 1 cut(s) 995
BspANI GGCC 7 cut(s) 417, 445, 501, 603, 650, 770, 888
BspCNI CTCAG 2 cut(s) 439, 1648
BspDI ATCGAT 2 cut(s) 849, 1302
BspEI TCCGGA 1 cut(s) 1561
BspHI TCATGA 2 cut(s) 822, 1603
BspLI GGNNCC 9 cut(s) 418, 445, 628, 894, 1161, 1227, 1422, 1551, 1698
BspMAI CTGCAG 1 cut(s) 518
BspPI GGATC 6 cut(s) 845, 1075, 1307, 1325, 1415, 1428
BspT107I GGYRCC 5 cut(s) 626, 892, 1159, 1225, 1696
BspTNI GGTCTC 1 cut(s) 860
BsrDI GCAATG 1 cut(s) 418
BsrFI RCCGGY 5 cut(s) 280, 560, 860, 952, 1395
BsrGI TGTACA 1 cut(s) 660
BsrI ACTGG 1 cut(s) 969
BssAI RCCGGY 5 cut(s) 280, 560, 860, 952, 1395
BssECI CCNNGG 8 cut(s) 496, 651, 789, 790, 1163, 1381, 1668, 1688
BssNI GRCGYC 6 cut(s) 558, 627, 780, 1209, 1226, 1644
BssSI CACGAG 2 cut(s) 694, 1283
BssT1I CCWWGG 2 cut(s) 496, 1381
Bst2BI CACGAG 2 cut(s) 694, 1283
Bst2UI CCWGG 1 cut(s) 791
Bst4CI ACNGT 6 cut(s) 547, 719, 1508, 1669, 1706, 1719
Bst6I CTCTTC 2 cut(s) 251, 461
BstACI GRCGYC 6 cut(s) 558, 627, 780, 1209, 1226, 1644
BstAUI TGTACA 1 cut(s) 660
BstBAI YACGTR 2 cut(s) 623, 1588
BstC8I GCNNGC 8 cut(s) 443, 473, 562, 643, 732, 815, 1182, 1495
BstDEI CTNAG 2 cut(s) 426, 1656
BstDSI CCRYGG 2 cut(s) 1668, 1688
BstF5I GGATG 5 cut(s) 10, 179, 405, 838, 1506
BstH2I RGCGCY 3 cut(s) 402, 630, 1229
BstMAI GTCTC 3 cut(s) 395, 725, 860
BstMCI CGRYCG 3 cut(s) 718, 771, 930
BstMWI GCNNNNNNNGC 8 cut(s) 227, 561, 600, 635, 647, 1190, 1690, 1696
BstNI CCWGG 1 cut(s) 791
BstNSI RCATGY 1 cut(s) 475
BstSCI CCNGG 7 cut(s) 789, 888, 1162, 1163, 1313, 1343, 1371
BstSFI CTRYAG 1 cut(s) 514
BstSLI GKGCMC 2 cut(s) 447, 1164
BstV1I GCAGC 3 cut(s) 528, 625, 1671
BstV2I GAAGAC 5 cut(s) 6, 282, 577, 1209, 1619
BstX2I RGATCY 2 cut(s) 1067, 1420
BstYI RGATCY 2 cut(s) 1067, 1420
BstZI CGGCCG 1 cut(s) 768
Bsu15I ATCGAT 2 cut(s) 849, 1302
BsuRI GGCC 7 cut(s) 417, 445, 501, 603, 650, 770, 888
BsuTUI ATCGAT 2 cut(s) 849, 1302
BtgI CCRYGG 2 cut(s) 1668, 1688
BtrI CACGTC 2 cut(s) 949, 1459
BtsCI GGATG 5 cut(s) 10, 179, 405, 838, 1506
BtuMI TCGCGA 1 cut(s) 995
Cac8I GCNNGC 8 cut(s) 443, 473, 562, 643, 732, 815, 1182, 1495
CciI TCATGA 2 cut(s) 822, 1603
Cfr10I RCCGGY 5 cut(s) 280, 560, 860, 952, 1395
Cfr13I GGNCC 5 cut(s) 283, 416, 443, 444, 887
Cfr42I CCGCGG 1 cut(s) 1691
Cfr9I CCCGGG 1 cut(s) 1163
ClaI ATCGAT 2 cut(s) 849, 1302
CpoI CGGWCCG 1 cut(s) 283
CseI GACGC 5 cut(s) 298, 566, 1094, 1217, 1652
Csp6I GTAC 8 cut(s) 430, 541, 661, 1009, 1405, 1504, 1585, 1702
CspAI ACCGGT 1 cut(s) 1395
CspI CGGWCCG 1 cut(s) 283
CviAII CATG 6 cut(s) 472, 823, 829, 1177, 1194, 1604
CviQI GTAC 8 cut(s) 430, 541, 661, 1009, 1405, 1504, 1585, 1702
DdeI CTNAG 2 cut(s) 426, 1656
DinI GGCGCC 2 cut(s) 628, 1227
DrdI GACNNNNNNGTC 3 cut(s) 281, 779, 1621
DriI GACNNNNNGTC 1 cut(s) 1648
DseDI GACNNNNNNGTC 3 cut(s) 281, 779, 1621
EaeI YGGCCR 1 cut(s) 768
EagI CGGCCG 1 cut(s) 768
Eam1104I CTCTTC 2 cut(s) 251, 461
Eam1105I GACNNNNNGTC 1 cut(s) 1648
EarI CTCTTC 2 cut(s) 251, 461
EciI GGCGGA 4 cut(s) 1080, 1259, 1583, 1688
Ecl136II GAGCTC 1 cut(s) 1270
EclXI CGGCCG 1 cut(s) 768
Eco130I CCWWGG 2 cut(s) 496, 1381
Eco24I GRGCYC 2 cut(s) 447, 1272
Eco31I GGTCTC 1 cut(s) 860
Eco32I GATATC 1 cut(s) 1437
Eco47I GGWCC 1 cut(s) 283
Eco52I CGGCCG 1 cut(s) 768
Eco53kI GAGCTC 1 cut(s) 1270
Eco57I CTGAAG 1 cut(s) 276
Eco72I CACGTG 1 cut(s) 623
Eco88I CYCGRG 3 cut(s) 652, 1163, 1256
EcoICRI GAGCTC 1 cut(s) 1270
EcoO109I RGGNCCY 1 cut(s) 444
EcoRII CCWGG 1 cut(s) 789
EcoRV GATATC 1 cut(s) 1437
EcoT14I CCWWGG 2 cut(s) 496, 1381
EcoT38I GRGCYC 2 cut(s) 447, 1272
EgeI GGCGCC 2 cut(s) 628, 1227
EheI GGCGCC 2 cut(s) 628, 1227
ErhI CCWWGG 2 cut(s) 496, 1381
Esp3I CGTCTC 1 cut(s) 725
FaeI CATG 6 cut(s) 475, 826, 832, 1180, 1197, 1607
FaiI YATR 9 cut(s) 473, 824, 830, 980, 1178, 1195, 1487, 1599, 1605
FaqI GGGAC 2 cut(s) 807, 1211
FatI CATG 6 cut(s) 471, 822, 828, 1176, 1193, 1603
FauI CCCGC 8 cut(s) 235, 285, 434, 444, 650, 676, 1402, 1686
FblI GTMKAC 3 cut(s) 273, 297, 783
Fnu4HI GCNGC 9 cut(s) 502, 517, 520, 639, 896, 1063, 1685, 1688, 1691
FokI GGATG 5 cut(s) 17, 166, 392, 825, 1513
FriOI GRGCYC 2 cut(s) 447, 1272
Fsp4HI GCNGC 9 cut(s) 502, 517, 520, 639, 896, 1063, 1685, 1688, 1691
FspBI CTAG 1 cut(s) 1101
GluI GCNGC 9 cut(s) 502, 517, 520, 639, 896, 1063, 1685, 1688, 1691
GsaI CCCAGC 1 cut(s) 77
HaeII RGCGCY 3 cut(s) 402, 630, 1229
HaeIII GGCC 7 cut(s) 417, 445, 501, 603, 650, 770, 888
HgaI GACGC 5 cut(s) 298, 566, 1094, 1217, 1652
Hin1I GRCGYC 6 cut(s) 558, 627, 780, 1209, 1226, 1644
Hin1II CATG 6 cut(s) 475, 826, 832, 1180, 1197, 1607
HincII GTYRAC 5 cut(s) 274, 298, 765, 784, 1189
HindII GTYRAC 5 cut(s) 274, 298, 765, 784, 1189
HinfI GANTC 7 cut(s) 163, 489, 737, 1136, 1348, 1558, 1622
HpaI GTTAAC 1 cut(s) 1189
HphI GGTGA 7 cut(s) 183, 598, 1012, 1375, 1459, 1478, 1648
Hpy166II GTNNAC 9 cut(s) 274, 298, 543, 765, 784, 1020, 1189, 1276, 1405
Hpy188I TCNGA 9 cut(s) 488, 742, 843, 1032, 1037, 1119, 1141, 1425, 1657
Hpy8I GTNNAC 9 cut(s) 274, 298, 543, 765, 784, 1020, 1189, 1276, 1405
HpyAV CCTTC 4 cut(s) 393, 880, 984, 1123
HpyCH4III ACNGT 6 cut(s) 547, 719, 1508, 1669, 1706, 1719
HpyCH4IV ACGT 7 cut(s) 525, 582, 622, 780, 948, 1458, 1587
HpyCH4V TGCA 3 cut(s) 215, 516, 1180
HpyF10VI GCNNNNNNNGC 8 cut(s) 227, 561, 600, 635, 647, 1190, 1690, 1696
HpyF3I CTNAG 2 cut(s) 426, 1656
HpySE526I ACGT 7 cut(s) 525, 582, 622, 780, 948, 1458, 1587
Hsp92I GRCGYC 6 cut(s) 558, 627, 780, 1209, 1226, 1644
Hsp92II CATG 6 cut(s) 475, 826, 832, 1180, 1197, 1607
KasI GGCGCC 2 cut(s) 626, 1225
Kpn2I TCCGGA 1 cut(s) 1561
KroI GCCGGC 1 cut(s) 560
KroNI GCCGGC 1 cut(s) 562
KspAI GTTAAC 1 cut(s) 1189
KspI CCGCGG 1 cut(s) 1691
LmnI GCTCC 7 cut(s) 334, 480, 932, 987, 1246, 1267, 1549
Lsp1109I GCAGC 3 cut(s) 528, 625, 1671
LweI GCATC 2 cut(s) 847, 1416
MaeI CTAG 1 cut(s) 1101
MaeII ACGT 7 cut(s) 525, 582, 622, 780, 948, 1458, 1587
MaeIII GTNAC 4 cut(s) 320, 334, 881, 1733
MflI RGATCY 2 cut(s) 1067, 1420
MhlI GDGCHC 5 cut(s) 447, 1164, 1251, 1272, 1476
MluCI AATT 2 cut(s) 105, 1113
MluI ACGCGT 1 cut(s) 307
Mly113I GGCGCC 2 cut(s) 627, 1226
MlyI GAGTC 3 cut(s) 157, 746, 1631
MmeI TCCRAC 1 cut(s) 1062
MroI TCCGGA 1 cut(s) 1561
MroNI GCCGGC 1 cut(s) 560
MroXI GAANNNNTTC 1 cut(s) 1397
MseI TTAA 3 cut(s) 807, 1188, 1680
MslI CAYNNNNRTG 1 cut(s) 827
MspA1I CMGCKG 3 cut(s) 230, 638, 1690
MspR9I CCNGG 7 cut(s) 791, 890, 1164, 1165, 1315, 1345, 1373
MvaI CCWGG 1 cut(s) 791
MwoI GCNNNNNNNGC 8 cut(s) 227, 561, 600, 635, 647, 1190, 1690, 1696
NaeI GCCGGC 1 cut(s) 562
NarI GGCGCC 2 cut(s) 627, 1226
NciI CCSGG 6 cut(s) 890, 1164, 1165, 1315, 1345, 1373
NgoMIV GCCGGC 1 cut(s) 560
NlaIII CATG 6 cut(s) 475, 826, 832, 1180, 1197, 1607
NlaIV GGNNCC 9 cut(s) 418, 445, 628, 894, 1161, 1227, 1422, 1551, 1698
NmeAIII GCCGAG 1 cut(s) 760
NmuCI GTSAC 1 cut(s) 1733
NruI TCGCGA 1 cut(s) 995
NspI RCATGY 1 cut(s) 475
PaeI GCATGC 1 cut(s) 475
PaeR7I CTCGAG 1 cut(s) 1256
PagI TCATGA 2 cut(s) 822, 1603
PasI CCCWGGG 1 cut(s) 790
PcsI WCGNNNNNNNCGW 8 cut(s) 701, 732, 780, 839, 1131, 1197, 1331, 1584
PdiI GCCGGC 1 cut(s) 562
PdmI GAANNNNTTC 1 cut(s) 1397
PfeI GAWTC 4 cut(s) 489, 1136, 1348, 1558
Pfl23II CGTACG 1 cut(s) 1701
PinAI ACCGGT 1 cut(s) 1395
PkrI GCNGC 9 cut(s) 503, 518, 521, 640, 897, 1064, 1686, 1689, 1692
PleI GAGTC 3 cut(s) 157, 745, 1630
PluTI GGCGCC 2 cut(s) 630, 1229
PmaCI CACGTG 1 cut(s) 623
PmlI CACGTG 1 cut(s) 623
PpsI GAGTC 3 cut(s) 157, 745, 1630
Ppu21I YACGTR 2 cut(s) 623, 1588
Psp124BI GAGCTC 1 cut(s) 1272
Psp6I CCWGG 1 cut(s) 789
PspCI CACGTG 1 cut(s) 623
PspFI CCCAGC 1 cut(s) 73
PspGI CCWGG 1 cut(s) 789
PspLI CGTACG 1 cut(s) 1701
PspN4I GGNNCC 9 cut(s) 418, 445, 628, 894, 1161, 1227, 1422, 1551, 1698
PspOMI GGGCCC 1 cut(s) 443
PspPI GGNCC 5 cut(s) 283, 416, 443, 444, 887
PsrI GAACNNNNNNTAC 2 cut(s) 1001, 1033
PstI CTGCAG 1 cut(s) 518
PsuI RGATCY 2 cut(s) 1067, 1420
RruI TCGCGA 1 cut(s) 995
RsaI GTAC 8 cut(s) 431, 542, 662, 1010, 1406, 1505, 1586, 1703
RsaNI GTAC 8 cut(s) 430, 541, 661, 1009, 1405, 1504, 1585, 1702
RseI CAYNNNNRTG 1 cut(s) 827
Rsr2I CGGWCCG 1 cut(s) 283
RsrII CGGWCCG 1 cut(s) 283
SacI GAGCTC 1 cut(s) 1272
SacII CCGCGG 1 cut(s) 1691
SalI GTCGAC 3 cut(s) 272, 296, 782
SaqAI TTAA 3 cut(s) 807, 1188, 1680
SatI GCNGC 9 cut(s) 502, 517, 520, 639, 896, 1063, 1685, 1688, 1691
Sau96I GGNCC 5 cut(s) 283, 416, 443, 444, 887
SchI GAGTC 3 cut(s) 157, 746, 1631
ScrFI CCNGG 7 cut(s) 791, 890, 1164, 1165, 1315, 1345, 1373
SduI GDGCHC 5 cut(s) 447, 1164, 1251, 1272, 1476
SfaNI GCATC 2 cut(s) 847, 1416
SfcI CTRYAG 1 cut(s) 514
SfoI GGCGCC 2 cut(s) 628, 1227
Sfr274I CTCGAG 1 cut(s) 1256
Sfr303I CCGCGG 1 cut(s) 1691
SgrAI CRCCGGYG 1 cut(s) 860
SgrBI CCGCGG 1 cut(s) 1691
SinI GGWCC 1 cut(s) 283
SlaI CTCGAG 1 cut(s) 1256
SmaI CCCGGG 1 cut(s) 1165
SmiMI CAYNNNNRTG 1 cut(s) 827
SmlI CTYRAG 2 cut(s) 1256, 1307
SmoI CTYRAG 2 cut(s) 1256, 1307
SphI GCATGC 1 cut(s) 475
Sse9I AATT 2 cut(s) 105, 1113
SspDI GGCGCC 2 cut(s) 626, 1225
SspMI CTAG 1 cut(s) 1101
SstI GAGCTC 1 cut(s) 1272
StyD4I CCNGG 7 cut(s) 789, 888, 1162, 1163, 1313, 1343, 1371
StyI CCWWGG 2 cut(s) 496, 1381
TaaI ACNGT 6 cut(s) 547, 719, 1508, 1669, 1706, 1719
TaiI ACGT 7 cut(s) 528, 585, 625, 783, 951, 1461, 1590
TasI AATT 2 cut(s) 105, 1113
TatI WGTACW 2 cut(s) 540, 660
TauI GCSGC 6 cut(s) 504, 522, 898, 1065, 1690, 1693
TfiI GAWTC 4 cut(s) 489, 1136, 1348, 1558
Tru1I TTAA 3 cut(s) 807, 1188, 1680
Tru9I TTAA 3 cut(s) 807, 1188, 1680
TseFI GTSAC 1 cut(s) 1733
TseI GCWGC 3 cut(s) 516, 638, 1684
Tsp45I GTSAC 1 cut(s) 1733
TspDTI ATGAA 4 cut(s) 247, 811, 1055, 1592
TspGWI ACGGA 3 cut(s) 811, 869, 1728
TspMI CCCGGG 1 cut(s) 1163
VpaK11BI GGWCC 1 cut(s) 283
XbaI TCTAGA 1 cut(s) 1100
XceI RCATGY 1 cut(s) 475
XhoI CTCGAG 1 cut(s) 1256
XmaI CCCGGG 1 cut(s) 1163
XmiI GTMKAC 3 cut(s) 273, 297, 783
XmnI GAANNNNTTC 1 cut(s) 1397
XspI CTAG 1 cut(s) 1101
ZraI GACGTC 1 cut(s) 781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.