Rh7AG388200

Trafficking protein particle complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0009422
Physical Location & Seq
Reverse (-)
50931620 .. 50936070
4451 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG388200.1

Sequence Viewer

Length: 444 bp
ATGAGTAGCACCGGCCAAGGTGGACCCCACTCACTGGCCTTCAGGGTGATGCGTCTCGTCTCTGCCAGCCCTCATTCCAAGTGGACTCCATTCTGCTCCTGCTCGACCCCACCGATCTCCTCGTCGGCGAGGACATCTTCGACAACCCAGTCGCCTCCGTCCAGAGCAATTTACTTAGGGGAGACGTTTTGTAGCTACATTTGCATCAATAACAGCTCCAATTTCGAAGTCAGGGACATTATCATCAAGGCGGAGATGCAAATAGAGAGGCAGAGGCCTGTTCTGTTGGAGAAGTCAAAATCGCCGGTTGAGTCCATTCGTGCTGGAGGGCGTTATGACTTCATTGTTGAGCAAGCTGAGACCAGCAGTAGATCAACACTGAGGAGACGAACCAGACACCGATGGTCCGTTAATGGATACGGCTGGTCGGGGGCATCACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF974

Protein Analysis

147

Amino Acids

16.35

Weight (kDa)

10.04

Isoelectric Point (pI)

67.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAPPC13_N PF06159 41 - 117 2.9e-13 Trafficking protein particle complex subunit 13, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 148
AccB7I CCANNNNNTGG 1 cut(s) 34
AciI CCGC 1 cut(s) 251
AcoI YGGCCR 1 cut(s) 13
AcuI CTGAAG 1 cut(s) 25
AfiI CCNNNNNNNGG 1 cut(s) 34
AluBI AGCT 3 cut(s) 195, 216, 356
AluI AGCT 3 cut(s) 195, 216, 356
Alw26I GTCTC 5 cut(s) 59, 64, 176, 353, 379
AoxI GGCC 3 cut(s) 13, 36, 275
AspS9I GGNCC 2 cut(s) 23, 405
AsuHPI GGTGA 1 cut(s) 58
AsuII TTCGAA 1 cut(s) 225
AvaII GGWCC 2 cut(s) 23, 405
BccI CCATC 1 cut(s) 396
BceAI ACGGC 1 cut(s) 436
BciVI GTATCC 1 cut(s) 410
BcoDI GTCTC 5 cut(s) 59, 64, 176, 353, 379
BfuI GTATCC 1 cut(s) 410
Bme18I GGWCC 2 cut(s) 23, 405
BmgT120I GGNCC 2 cut(s) 23, 405
BmiI GGNNCC 1 cut(s) 25
BmrI ACTGGG 1 cut(s) 142
BmsI GCATC 3 cut(s) 39, 213, 246
BmuI ACTGGG 1 cut(s) 142
BpmI CTGGAG 1 cut(s) 345
Bpu14I TTCGAA 1 cut(s) 225
BsaI GGTCTC 1 cut(s) 353
BsaJI CCNNGG 1 cut(s) 16
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse118I RCCGGY 2 cut(s) 11, 304
Bse1I ACTGG 2 cut(s) 39, 148
BseDI CCNNGG 1 cut(s) 16
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMII CTCAG 2 cut(s) 348, 371
BseNI ACTGG 2 cut(s) 39, 148
BseRI GAGGAG 2 cut(s) 109, 397
BshFI GGCC 3 cut(s) 15, 38, 277
BsiSI CCGG 2 cut(s) 12, 305
BslFI GGGAC 1 cut(s) 248
BslI CCNNNNNNNGG 1 cut(s) 34
BsmAI GTCTC 5 cut(s) 59, 64, 176, 353, 379
BsmBI CGTCTC 4 cut(s) 59, 64, 176, 379
BsmFI GGGAC 1 cut(s) 248
BsnI GGCC 3 cut(s) 15, 38, 277
Bso31I GGTCTC 1 cut(s) 353
Bsp119I TTCGAA 1 cut(s) 225
Bsp143I GATC 2 cut(s) 114, 371
BspACI CCGC 1 cut(s) 251
BspANI GGCC 3 cut(s) 15, 38, 277
BspCNI CTCAG 2 cut(s) 349, 372
BspLI GGNNCC 1 cut(s) 25
BspT104I TTCGAA 1 cut(s) 225
BspTNI GGTCTC 1 cut(s) 353
BsrFI RCCGGY 2 cut(s) 11, 304
BsrI ACTGG 2 cut(s) 39, 148
BssAI RCCGGY 2 cut(s) 11, 304
BssECI CCNNGG 1 cut(s) 16
BssMI GATC 2 cut(s) 114, 371
BssT1I CCWWGG 1 cut(s) 16
Bst4CI ACNGT 1 cut(s) 441
BstBI TTCGAA 1 cut(s) 225
BstC8I GCNNGC 2 cut(s) 67, 354
BstDEI CTNAG 3 cut(s) 175, 357, 380
BstKTI GATC 2 cut(s) 117, 374
BstMAI GTCTC 5 cut(s) 59, 64, 176, 353, 379
BstMBI GATC 2 cut(s) 114, 371
BstMWI GCNNNNNNNGC 1 cut(s) 201
BsuI GTATCC 1 cut(s) 410
BsuRI GGCC 3 cut(s) 15, 38, 277
BtsIMutI CAGTG 2 cut(s) 32, 377
Cac8I GCNNGC 2 cut(s) 67, 354
Cfr10I RCCGGY 2 cut(s) 11, 304
Cfr13I GGNCC 2 cut(s) 23, 405
CseI GACGC 1 cut(s) 41
CviJI RGCY 8 cut(s) 15, 38, 69, 195, 216, 277, 356, 423
CviKI_1 RGCY 8 cut(s) 15, 38, 69, 195, 216, 277, 356, 423
DdeI CTNAG 3 cut(s) 175, 357, 380
DpnI GATC 2 cut(s) 116, 373
DpnII GATC 2 cut(s) 114, 371
DrdI GACNNNNNNGTC 1 cut(s) 148
DseDI GACNNNNNNGTC 1 cut(s) 148
EaeI YGGCCR 1 cut(s) 13
EciI GGCGGA 1 cut(s) 266
Eco130I CCWWGG 1 cut(s) 16
Eco147I AGGCCT 1 cut(s) 277
Eco31I GGTCTC 1 cut(s) 353
Eco47I GGWCC 2 cut(s) 23, 405
Eco57I CTGAAG 1 cut(s) 25
EcoT14I CCWWGG 1 cut(s) 16
ErhI CCWWGG 1 cut(s) 16
Esp3I CGTCTC 4 cut(s) 59, 64, 176, 379
FaiI YATR 1 cut(s) 336
FaqI GGGAC 1 cut(s) 248
GsuI CTGGAG 1 cut(s) 345
HaeIII GGCC 3 cut(s) 15, 38, 277
HapII CCGG 2 cut(s) 12, 305
HgaI GACGC 1 cut(s) 41
HinfI GANTC 2 cut(s) 85, 311
HpaII CCGG 2 cut(s) 12, 305
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 2 cut(s) 23, 84
Hpy188III TCNNGA 1 cut(s) 162
Hpy8I GTNNAC 2 cut(s) 23, 84
Hpy99I CGWCG 1 cut(s) 127
HpyAV CCTTC 1 cut(s) 49
HpyCH4III ACNGT 1 cut(s) 441
HpyCH4IV ACGT 1 cut(s) 185
HpyCH4V TGCA 2 cut(s) 204, 259
HpyF10VI GCNNNNNNNGC 1 cut(s) 201
HpyF3I CTNAG 3 cut(s) 175, 357, 380
HpySE526I ACGT 1 cut(s) 185
Kzo9I GATC 2 cut(s) 114, 371
LmnI GCTCC 2 cut(s) 101, 221
LweI GCATC 3 cut(s) 39, 213, 246
MaeII ACGT 1 cut(s) 185
MalI GATC 2 cut(s) 116, 373
MboI GATC 2 cut(s) 114, 371
MboII GAAGA 1 cut(s) 129
MluCI AATT 2 cut(s) 168, 220
MlyI GAGTC 2 cut(s) 79, 320
MmeI TCCRAC 1 cut(s) 267
MnlI CCTC 8 cut(s) 81, 123, 130, 165, 261, 267, 320, 375
MseI TTAA 1 cut(s) 411
MspI CCGG 2 cut(s) 12, 305
MwoI GCNNNNNNNGC 1 cut(s) 201
NdeII GATC 2 cut(s) 114, 371
NlaIV GGNNCC 1 cut(s) 25
NspV TTCGAA 1 cut(s) 225
PceI AGGCCT 1 cut(s) 277
PcsI WCGNNNNNNNCGW 1 cut(s) 110
PflMI CCANNNNNTGG 1 cut(s) 34
PleI GAGTC 2 cut(s) 79, 319
PpsI GAGTC 2 cut(s) 79, 319
PspN4I GGNNCC 1 cut(s) 25
PspPI GGNCC 2 cut(s) 23, 405
SaqAI TTAA 1 cut(s) 411
Sau3AI GATC 2 cut(s) 114, 371
Sau96I GGNCC 2 cut(s) 23, 405
SchI GAGTC 2 cut(s) 79, 320
SetI ASST 5 cut(s) 22, 188, 197, 218, 358
SfaNI GCATC 3 cut(s) 39, 213, 246
SfuI TTCGAA 1 cut(s) 225
SinI GGWCC 2 cut(s) 23, 405
Sse9I AATT 2 cut(s) 168, 220
SseBI AGGCCT 1 cut(s) 277
SsiI CCGC 1 cut(s) 251
StuI AGGCCT 1 cut(s) 277
StyI CCWWGG 1 cut(s) 16
TaaI ACNGT 1 cut(s) 441
TaiI ACGT 1 cut(s) 188
TaqI TCGA 3 cut(s) 104, 140, 225
TasI AATT 2 cut(s) 168, 220
Tru1I TTAA 1 cut(s) 411
Tru9I TTAA 1 cut(s) 411
TscAI CASTG 2 cut(s) 39, 384
TspDTI ATGAA 1 cut(s) 331
TspGWI ACGGA 2 cut(s) 147, 397
TspRI CASTG 2 cut(s) 39, 384
Van91I CCANNNNNTGG 1 cut(s) 34
VpaK11BI GGWCC 2 cut(s) 23, 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.