Rh5DG056800

Trafficking protein particle complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0009422
Physical Location & Seq
Forward (+)
4860958 .. 4865269
4312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG056800.1

Sequence Viewer

Length: 981 bp
ATGAGTAGCACCGGGCAAGGTGGACCCCACTCACTGGCCTTCAGGGTGATGCGTCTCTGCAAGCCTTCATTCCAGGTGGACTCTATTCCGCTCCTGCTCGACCCCGCCGATCTCCTCGTCGGCGAGGACATCTTCGACGACCCGGTCGCCGCCGCCCAGGTCCCTCGCCTCCTCGACAGCCACGTGTCCTCCCCCGACTCCTCCGATCCCAGCTACCGCACCAGATTGCTCCTCCACCACCCCTCCGACTCCATCGGCGTCTCCGGCCTCCTCGTCCTCCCCCAAGCCTTCGGAGCAATTTACTTAGGGGAGACGTTTTGTAGCTACATTAGCATCAATAACAGCTCCAATTTCGAAGTCAGGGACATTATTATCAAGGCGGAGATGCAAACAGAGAGGCAGAGGCTTGTGCTGTTGGAGACGTCGAAATCGCCGGTTGAGTCCATTCGTGCCGGAGGGCGTTATGACTTCATTGTTGAGCACGATGTGAAGGAACTCGGAGCTCACACGTTGGTGTGCACTGCGTTGTACAATGATGGTGACGGCGAGCGTAAATATCTACCGCAATTCTTCAAATTCATTGTGGCAAATCCTCTTTCGGTACGGACTAAGGTCCGTGTTGTTAAGGAAACTACTTTTTTAGAAGCTTGCATTGAAAATCATACAAAATCAAATCTTTTTATGGACCAAGTTGAGTTTGAGCCTGCTGGGCATTGGGGTGCAAAACTTCTAAAAGCTGATGAACACCATTCTGAGACGAAATCTCAAACAAGAGAGATGTTTAAGCCACCGGTTCTCATCAGATCTGGCGGAGGAGTTCGTAACTATCTTTATCAGTTAATATCACATGGCTCTGCCCAAACGAAAGTGGAGGGAAGCAATATTCTTGGTAAACTTCAGATAACGTGGCGAACAAATCTGGGTGAACCTGGTCGCCTACAAACACAGCAAATTATGGGCACTGTGAGTTTTCAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF974

Protein Analysis

326

Amino Acids

36.26

Weight (kDa)

6.26

Isoelectric Point (pI)

30.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAPPC13_N PF06159 10 - 195 3.6e-37 Trafficking protein particle complex subunit 13, N-terminal
TRAPPC13_M PF23647 199 - 318 8.3e-22 Trafficking protein particle complex subunit 13, middle domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 143
AatII GACGTC 1 cut(s) 425
AccB7I CCANNNNNTGG 1 cut(s) 34
AccBSI CCGCTC 1 cut(s) 91
AciI CCGC 8 cut(s) 89, 105, 150, 153, 217, 380, 563, 810
AclWI GGATC 1 cut(s) 200
AcsI RAATTY 1 cut(s) 575
AcuI CTGAAG 2 cut(s) 25, 881
AcvI CACGTG 1 cut(s) 184
AcyI GRCGYC 2 cut(s) 258, 422
AdeI CACNNNGTG 1 cut(s) 487
AfaI GTAC 2 cut(s) 530, 603
AfiI CCNNNNNNNGG 1 cut(s) 34
AflIII ACRYGT 2 cut(s) 183, 507
AgeI ACCGGT 1 cut(s) 790
AgsI TTSAA 3 cut(s) 574, 656, 974
AjnI CCWGG 3 cut(s) 72, 156, 928
AleI CACNNNNGTG 1 cut(s) 512
AluBI AGCT 6 cut(s) 213, 324, 345, 503, 647, 737
AluI AGCT 6 cut(s) 213, 324, 345, 503, 647, 737
Alw21I GWGCWC 3 cut(s) 483, 505, 521
Alw26I GTCTC 5 cut(s) 59, 265, 305, 413, 749
Alw44I GTGCAC 1 cut(s) 517
AlwI GGATC 1 cut(s) 200
AoxI GGCC 2 cut(s) 36, 265
ApaLI GTGCAC 1 cut(s) 517
ApoI RAATTY 1 cut(s) 575
AsiGI ACCGGT 1 cut(s) 790
AspS9I GGNCC 4 cut(s) 23, 160, 613, 685
AsuC2I CCSGG 2 cut(s) 13, 143
AsuHPI GGTGA 3 cut(s) 58, 551, 935
AsuII TTCGAA 1 cut(s) 354
AvaII GGWCC 4 cut(s) 23, 160, 613, 685
BaeGI GKGCMC 2 cut(s) 521, 962
BanII GRGCYC 1 cut(s) 505
BbrPI CACGTG 1 cut(s) 184
Bbv12I GWGCWC 3 cut(s) 483, 505, 521
BccI CCATC 2 cut(s) 260, 530
BceAI ACGGC 1 cut(s) 559
BciT130I CCWGG 3 cut(s) 74, 158, 930
BcnI CCSGG 2 cut(s) 13, 143
BcoDI GTCTC 5 cut(s) 59, 265, 305, 413, 749
BglI GCCNNNNNGGC 1 cut(s) 709
BglII AGATCT 1 cut(s) 803
BisI GCNGC 2 cut(s) 150, 153
BlsI GCNGC 2 cut(s) 151, 154
Bme1390I CCNGG 5 cut(s) 13, 74, 143, 158, 930
Bme18I GGWCC 4 cut(s) 23, 160, 613, 685
BmgT120I GGNCC 4 cut(s) 23, 160, 613, 685
BmiI GGNNCC 2 cut(s) 25, 162
BmrFI CCNGG 5 cut(s) 13, 74, 143, 158, 930
BmsI GCATC 3 cut(s) 39, 342, 375
BoxI GACNNNNGTC 1 cut(s) 611
Bpu14I TTCGAA 1 cut(s) 354
BpuMI CCSGG 2 cut(s) 13, 143
BsaAI YACGTR 1 cut(s) 184
BsaHI GRCGYC 2 cut(s) 258, 422
BsaJI CCNNGG 1 cut(s) 156
BsaWI WCCGGW 1 cut(s) 790
BsaXI ACNNNNNCTCC 4 cut(s) 173, 203, 227, 257
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse118I RCCGGY 2 cut(s) 433, 790
Bse1I ACTGG 1 cut(s) 39
BseBI CCWGG 3 cut(s) 74, 158, 930
BseDI CCNNGG 1 cut(s) 156
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMII CTCAG 1 cut(s) 744
BseNI ACTGG 1 cut(s) 39
BseRI GAGGAG 6 cut(s) 104, 161, 190, 221, 260, 828
BseSI GKGCMC 2 cut(s) 521, 962
BseYI CCCAGC 2 cut(s) 209, 707
Bsh1285I CGRYCG 1 cut(s) 147
BshFI GGCC 2 cut(s) 38, 267
BshTI ACCGGT 1 cut(s) 790
BsiEI CGRYCG 1 cut(s) 147
BsiHKAI GWGCWC 3 cut(s) 483, 505, 521
BsiSI CCGG 6 cut(s) 12, 143, 264, 434, 453, 791
BslFI GGGAC 2 cut(s) 146, 377
BslI CCNNNNNNNGG 1 cut(s) 34
BsmAI GTCTC 5 cut(s) 59, 265, 305, 413, 749
BsmBI CGTCTC 5 cut(s) 59, 265, 305, 413, 749
BsmFI GGGAC 2 cut(s) 146, 377
BsnI GGCC 2 cut(s) 38, 267
Bsp119I TTCGAA 1 cut(s) 354
Bsp1286I GDGCHC 4 cut(s) 483, 505, 521, 962
Bsp1407I TGTACA 1 cut(s) 528
Bsp143I GATC 3 cut(s) 109, 205, 803
BspACI CCGC 8 cut(s) 89, 105, 150, 153, 217, 380, 563, 810
BspANI GGCC 2 cut(s) 38, 267
BspCNI CTCAG 1 cut(s) 745
BspLI GGNNCC 2 cut(s) 25, 162
BspPI GGATC 1 cut(s) 200
BspT104I TTCGAA 1 cut(s) 354
BsrBI CCGCTC 1 cut(s) 91
BsrFI RCCGGY 2 cut(s) 433, 790
BsrGI TGTACA 1 cut(s) 528
BsrI ACTGG 1 cut(s) 39
BssAI RCCGGY 2 cut(s) 433, 790
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 3 cut(s) 109, 205, 803
BssNI GRCGYC 2 cut(s) 258, 422
Bst2UI CCWGG 3 cut(s) 74, 158, 930
Bst4CI ACNGT 1 cut(s) 964
BstACI GRCGYC 2 cut(s) 258, 422
BstAUI TGTACA 1 cut(s) 528
BstBAI YACGTR 1 cut(s) 184
BstBI TTCGAA 1 cut(s) 354
BstC8I GCNNGC 4 cut(s) 62, 548, 649, 705
BstDEI CTNAG 3 cut(s) 304, 609, 753
BstKTI GATC 3 cut(s) 112, 208, 806
BstMAI GTCTC 5 cut(s) 59, 265, 305, 413, 749
BstMBI GATC 3 cut(s) 109, 205, 803
BstMCI CGRYCG 1 cut(s) 147
BstMWI GCNNNNNNNGC 4 cut(s) 264, 293, 330, 709
BstNI CCWGG 3 cut(s) 74, 158, 930
BstPAI GACNNNNGTC 1 cut(s) 611
BstSCI CCNGG 5 cut(s) 11, 72, 141, 156, 928
BstSLI GKGCMC 2 cut(s) 521, 962
BstX2I RGATCY 1 cut(s) 803
BstYI RGATCY 1 cut(s) 803
BsuRI GGCC 2 cut(s) 38, 267
BtsI GCAGTG 1 cut(s) 519
BtsIMutI CAGTG 3 cut(s) 32, 519, 960
Cac8I GCNNGC 4 cut(s) 62, 548, 649, 705
Cfr10I RCCGGY 2 cut(s) 433, 790
Cfr13I GGNCC 4 cut(s) 23, 160, 613, 685
CseI GACGC 2 cut(s) 41, 247
CsiI ACCWGGT 1 cut(s) 928
Csp6I GTAC 2 cut(s) 529, 602
CspAI ACCGGT 1 cut(s) 790
CviAII CATG 1 cut(s) 848
CviQI GTAC 2 cut(s) 529, 602
DdeI CTNAG 3 cut(s) 304, 609, 753
DpnI GATC 3 cut(s) 111, 207, 805
DpnII GATC 3 cut(s) 109, 205, 803
DraIII CACNNNGTG 1 cut(s) 487
DrdI GACNNNNNNGTC 1 cut(s) 143
DseDI GACNNNNNNGTC 1 cut(s) 143
EciI GGCGGA 2 cut(s) 395, 825
Ecl136II GAGCTC 1 cut(s) 503
Eco24I GRGCYC 1 cut(s) 505
Eco47I GGWCC 4 cut(s) 23, 160, 613, 685
Eco53kI GAGCTC 1 cut(s) 503
Eco57I CTGAAG 2 cut(s) 25, 881
Eco72I CACGTG 1 cut(s) 184
EcoICRI GAGCTC 1 cut(s) 503
EcoO109I RGGNCCY 1 cut(s) 160
EcoRII CCWGG 3 cut(s) 72, 156, 928
EcoT38I GRGCYC 1 cut(s) 505
Esp3I CGTCTC 5 cut(s) 59, 265, 305, 413, 749
FaeI CATG 1 cut(s) 851
FaiI YATR 5 cut(s) 465, 663, 683, 849, 956
FaqI GGGAC 2 cut(s) 146, 377
FatI CATG 1 cut(s) 847
FauI CCCGC 1 cut(s) 112
Fnu4HI GCNGC 2 cut(s) 150, 153
FriOI GRGCYC 1 cut(s) 505
Fsp4HI GCNGC 2 cut(s) 150, 153
GluI GCNGC 2 cut(s) 150, 153
GsaI CCCAGC 2 cut(s) 213, 711
HaeIII GGCC 2 cut(s) 38, 267
HapII CCGG 6 cut(s) 12, 143, 264, 434, 453, 791
HgaI GACGC 2 cut(s) 41, 247
Hin1I GRCGYC 2 cut(s) 258, 422
Hin1II CATG 1 cut(s) 851
HindIII AAGCTT 1 cut(s) 645
HinfI GANTC 4 cut(s) 80, 197, 248, 440
HpaII CCGG 6 cut(s) 12, 143, 264, 434, 453, 791
HphI GGTGA 3 cut(s) 58, 551, 935
Hpy166II GTNNAC 5 cut(s) 23, 79, 519, 893, 926
Hpy188I TCNGA 7 cut(s) 205, 247, 293, 500, 754, 803, 900
Hpy8I GTNNAC 5 cut(s) 23, 79, 519, 893, 926
Hpy99I CGWCG 3 cut(s) 122, 140, 427
HpyAV CCTTC 4 cut(s) 49, 75, 298, 484
HpyCH4III ACNGT 1 cut(s) 964
HpyCH4IV ACGT 5 cut(s) 183, 314, 422, 509, 905
HpyCH4V TGCA 5 cut(s) 60, 388, 519, 651, 722
HpyF10VI GCNNNNNNNGC 4 cut(s) 264, 293, 330, 709
HpyF3I CTNAG 3 cut(s) 304, 609, 753
HpySE526I ACGT 5 cut(s) 183, 314, 422, 509, 905
Hsp92I GRCGYC 2 cut(s) 258, 422
Hsp92II CATG 1 cut(s) 851
Kzo9I GATC 3 cut(s) 109, 205, 803
LmnI GCTCC 5 cut(s) 96, 234, 293, 350, 500
LweI GCATC 3 cut(s) 39, 342, 375
MabI ACCWGGT 1 cut(s) 928
MaeII ACGT 5 cut(s) 183, 314, 422, 509, 905
MaeIII GTNAC 2 cut(s) 539, 821
MalI GATC 3 cut(s) 111, 207, 805
MbiI CCGCTC 1 cut(s) 91
MboI GATC 3 cut(s) 109, 205, 803
MboII GAAGA 2 cut(s) 124, 562
MflI RGATCY 1 cut(s) 803
MhlI GDGCHC 4 cut(s) 483, 505, 521, 962
MluCI AATT 6 cut(s) 297, 349, 566, 575, 951, 974
MlyI GAGTC 4 cut(s) 74, 191, 242, 449
MmeI TCCRAC 2 cut(s) 270, 396
MseI TTAA 3 cut(s) 624, 783, 839
MslI CAYNNNNRTG 2 cut(s) 512, 717
MspI CCGG 6 cut(s) 12, 143, 264, 434, 453, 791
MspR9I CCNGG 5 cut(s) 13, 74, 143, 158, 930
MvaI CCWGG 3 cut(s) 74, 158, 930
MwoI GCNNNNNNNGC 4 cut(s) 264, 293, 330, 709
NciI CCSGG 2 cut(s) 13, 143
NdeII GATC 3 cut(s) 109, 205, 803
NlaIII CATG 1 cut(s) 851
NlaIV GGNNCC 2 cut(s) 25, 162
NmuCI GTSAC 1 cut(s) 539
NspV TTCGAA 1 cut(s) 354
OliI CACNNNNGTG 1 cut(s) 512
PcsI WCGNNNNNNNCGW 2 cut(s) 105, 180
PflFI GACNNNGTC 1 cut(s) 143
PflMI CCANNNNNTGG 1 cut(s) 34
PinAI ACCGGT 1 cut(s) 790
PkrI GCNGC 2 cut(s) 151, 154
PleI GAGTC 4 cut(s) 74, 191, 242, 448
PmaCI CACGTG 1 cut(s) 184
PmlI CACGTG 1 cut(s) 184
PpsI GAGTC 4 cut(s) 74, 191, 242, 448
Ppu21I YACGTR 1 cut(s) 184
PpuMI RGGWCCY 1 cut(s) 160
PshAI GACNNNNGTC 1 cut(s) 611
Psp124BI GAGCTC 1 cut(s) 505
Psp5II RGGWCCY 1 cut(s) 160
Psp6I CCWGG 3 cut(s) 72, 156, 928
PspCI CACGTG 1 cut(s) 184
PspFI CCCAGC 2 cut(s) 209, 707
PspGI CCWGG 3 cut(s) 72, 156, 928
PspN4I GGNNCC 2 cut(s) 25, 162
PspPI GGNCC 4 cut(s) 23, 160, 613, 685
PspPPI RGGWCCY 1 cut(s) 160
PsuI RGATCY 1 cut(s) 803
PsyI GACNNNGTC 1 cut(s) 143
RsaI GTAC 2 cut(s) 530, 603
RsaNI GTAC 2 cut(s) 529, 602
RseI CAYNNNNRTG 2 cut(s) 512, 717
SacI GAGCTC 1 cut(s) 505
SaqAI TTAA 3 cut(s) 624, 783, 839
SatI GCNGC 2 cut(s) 150, 153
Sau3AI GATC 3 cut(s) 109, 205, 803
Sau96I GGNCC 4 cut(s) 23, 160, 613, 685
SchI GAGTC 4 cut(s) 74, 191, 242, 449
ScrFI CCNGG 5 cut(s) 13, 74, 143, 158, 930
SduI GDGCHC 4 cut(s) 483, 505, 521, 962
SexAI ACCWGGT 1 cut(s) 928
SfaNI GCATC 3 cut(s) 39, 342, 375
SfuI TTCGAA 1 cut(s) 354
SinI GGWCC 4 cut(s) 23, 160, 613, 685
SmiMI CAYNNNNRTG 2 cut(s) 512, 717
Sse9I AATT 6 cut(s) 297, 349, 566, 575, 951, 974
SsiI CCGC 8 cut(s) 89, 105, 150, 153, 217, 380, 563, 810
SspI AATATT 1 cut(s) 883
SstI GAGCTC 1 cut(s) 505
StyD4I CCNGG 5 cut(s) 11, 72, 141, 156, 928
TaaI ACNGT 1 cut(s) 964
TaiI ACGT 5 cut(s) 186, 317, 425, 512, 908
TaqI TCGA 5 cut(s) 99, 135, 174, 354, 425
TasI AATT 6 cut(s) 297, 349, 566, 575, 951, 974
TatI WGTACW 1 cut(s) 528
TauI GCSGC 2 cut(s) 152, 155
Tru1I TTAA 3 cut(s) 624, 783, 839
Tru9I TTAA 3 cut(s) 624, 783, 839
TscAI CASTG 3 cut(s) 39, 526, 967
TseFI GTSAC 1 cut(s) 539
Tsp45I GTSAC 1 cut(s) 539
TspDTI ATGAA 4 cut(s) 57, 460, 568, 756
TspGWI ACGGA 2 cut(s) 605, 619
TspRI CASTG 3 cut(s) 39, 526, 967
Tth111I GACNNNGTC 1 cut(s) 143
Van91I CCANNNNNTGG 1 cut(s) 34
VneI GTGCAC 1 cut(s) 517
VpaK11BI GGWCC 4 cut(s) 23, 160, 613, 685
XapI RAATTY 1 cut(s) 575
ZraI GACGTC 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.