Rh7CG407500

Trafficking protein particle complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0009422
Physical Location & Seq
Reverse (-)
52356595 .. 52357435
841 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG407500.1

Sequence Viewer

Length: 630 bp
ATGAGTAGCACCGGCCAAGGTGGACCCCACTCACTGGCCTTCAGGCCCTCATTCCAAGTGGACTCCATTCTGCTCCTGCTCGACCCCACCGATCTCCTCGTCGGCGAGGACATCTTCGACAACCCAGTCGCCTCCGTCCAGGTCCCTTGCCTCCTCGACAGCCACGTGACCTCCGCTGACTCCTACGATCCCAGCTACCACACGAGATTGCTCCTCCACCACCCCTCTGACTCCATCGGCGTCTCCGGCCTCCTCGTCCTCCCCCAATCCTTCGGAGCAATTTACTTAGGGGAGACGTTTTGTAGCTACATTTGCATCAATAACAGCTCCAATTTCGAAGTCAGGGACATTATCATCAAGGCGGAGATGCAAATAGAGAGGCAGAGGCCTGTTCTGTTGGAGAAGTCAAAATCGCCGGTTGAGTCCATTCGTGCTGGAGGGCGTTATGACTTCATTGTTGAGCAAGCTGAGACCAGCAGTAGATCAACACTGAGGAGACGAACCAGACACCGATGGTCCGTTGTCATTTGGTCGCTAGAAACGGAAATTTCGGTCGGGTCTTCTTCCGGGTCATTGGGTCAATCTGTCTTGATGCTTCTCTATTTTGGGGTTTTCGTTTTGGGGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF974

Protein Analysis

209

Amino Acids

23.04

Weight (kDa)

5.46

Isoelectric Point (pI)

56.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAPPC13_N PF06159 71 - 154 4.7e-20 Trafficking protein particle complex subunit 13, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 125
AccB7I CCANNNNNTGG 1 cut(s) 34
AciI CCGC 2 cut(s) 174, 362
AclWI GGATC 1 cut(s) 182
AcoI YGGCCR 1 cut(s) 13
AcsI RAATTY 1 cut(s) 546
AcuI CTGAAG 1 cut(s) 25
AcvI CACGTG 1 cut(s) 166
AcyI GRCGYC 1 cut(s) 240
AfiI CCNNNNNNNGG 1 cut(s) 34
AjnI CCWGG 1 cut(s) 138
AluBI AGCT 4 cut(s) 195, 306, 327, 467
AluI AGCT 4 cut(s) 195, 306, 327, 467
Alw26I GTCTC 4 cut(s) 247, 287, 464, 490
AlwI GGATC 1 cut(s) 182
AoxI GGCC 5 cut(s) 13, 36, 44, 247, 386
ApoI RAATTY 1 cut(s) 546
AspS9I GGNCC 4 cut(s) 23, 45, 142, 516
AsuC2I CCSGG 1 cut(s) 568
AsuII TTCGAA 1 cut(s) 336
AvaII GGWCC 3 cut(s) 23, 142, 516
BauI CACGAG 1 cut(s) 202
BbrPI CACGTG 1 cut(s) 166
BbsI GAAGAC 1 cut(s) 552
BccI CCATC 2 cut(s) 242, 507
BciT130I CCWGG 1 cut(s) 140
BcnI CCSGG 1 cut(s) 568
BcoDI GTCTC 4 cut(s) 247, 287, 464, 490
BfaI CTAG 1 cut(s) 536
Bme1390I CCNGG 2 cut(s) 140, 568
Bme18I GGWCC 3 cut(s) 23, 142, 516
BmgT120I GGNCC 4 cut(s) 23, 45, 142, 516
BmiI GGNNCC 2 cut(s) 25, 144
BmrFI CCNGG 2 cut(s) 140, 568
BmrI ACTGGG 1 cut(s) 119
BmsI GCATC 3 cut(s) 324, 357, 582
BmuI ACTGGG 1 cut(s) 119
BpiI GAAGAC 1 cut(s) 552
BpmI CTGGAG 1 cut(s) 456
Bpu14I TTCGAA 1 cut(s) 336
BpuMI CCSGG 1 cut(s) 568
BsaAI YACGTR 1 cut(s) 166
BsaHI GRCGYC 1 cut(s) 240
BsaI GGTCTC 1 cut(s) 464
BsaJI CCNNGG 1 cut(s) 16
BsaXI ACNNNNNCTCC 2 cut(s) 155, 185
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse118I RCCGGY 2 cut(s) 11, 415
Bse1I ACTGG 2 cut(s) 39, 125
BseBI CCWGG 1 cut(s) 140
BseDI CCNNGG 1 cut(s) 16
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMII CTCAG 2 cut(s) 459, 482
BseNI ACTGG 2 cut(s) 39, 125
BseRI GAGGAG 5 cut(s) 86, 143, 203, 242, 508
BseYI CCCAGC 1 cut(s) 191
Bsh1285I CGRYCG 1 cut(s) 555
BshFI GGCC 5 cut(s) 15, 38, 46, 249, 388
BsiEI CGRYCG 1 cut(s) 555
BsiSI CCGG 4 cut(s) 12, 246, 416, 567
BslFI GGGAC 2 cut(s) 128, 359
BslI CCNNNNNNNGG 1 cut(s) 34
BsmAI GTCTC 4 cut(s) 247, 287, 464, 490
BsmBI CGTCTC 3 cut(s) 247, 287, 490
BsmFI GGGAC 2 cut(s) 128, 359
BsnI GGCC 5 cut(s) 15, 38, 46, 249, 388
Bso31I GGTCTC 1 cut(s) 464
Bsp119I TTCGAA 1 cut(s) 336
Bsp143I GATC 3 cut(s) 91, 187, 482
BspACI CCGC 2 cut(s) 174, 362
BspANI GGCC 5 cut(s) 15, 38, 46, 249, 388
BspCNI CTCAG 2 cut(s) 460, 483
BspLI GGNNCC 2 cut(s) 25, 144
BspPI GGATC 1 cut(s) 182
BspT104I TTCGAA 1 cut(s) 336
BspTNI GGTCTC 1 cut(s) 464
BsrFI RCCGGY 2 cut(s) 11, 415
BsrI ACTGG 2 cut(s) 39, 125
BssAI RCCGGY 2 cut(s) 11, 415
BssECI CCNNGG 1 cut(s) 16
BssMI GATC 3 cut(s) 91, 187, 482
BssNI GRCGYC 1 cut(s) 240
BssSI CACGAG 1 cut(s) 202
BssT1I CCWWGG 1 cut(s) 16
Bst2BI CACGAG 1 cut(s) 202
Bst2UI CCWGG 1 cut(s) 140
BstACI GRCGYC 1 cut(s) 240
BstBAI YACGTR 1 cut(s) 166
BstBI TTCGAA 1 cut(s) 336
BstC8I GCNNGC 1 cut(s) 465
BstDEI CTNAG 3 cut(s) 286, 468, 491
BstKTI GATC 3 cut(s) 94, 190, 485
BstMAI GTCTC 4 cut(s) 247, 287, 464, 490
BstMBI GATC 3 cut(s) 91, 187, 482
BstMCI CGRYCG 1 cut(s) 555
BstMWI GCNNNNNNNGC 2 cut(s) 246, 312
BstNI CCWGG 1 cut(s) 140
BstSCI CCNGG 2 cut(s) 138, 566
BstV2I GAAGAC 1 cut(s) 552
BsuRI GGCC 5 cut(s) 15, 38, 46, 249, 388
BtsIMutI CAGTG 2 cut(s) 32, 488
Cac8I GCNNGC 1 cut(s) 465
Cfr10I RCCGGY 2 cut(s) 11, 415
Cfr13I GGNCC 4 cut(s) 23, 45, 142, 516
CseI GACGC 1 cut(s) 229
DdeI CTNAG 3 cut(s) 286, 468, 491
DpnI GATC 3 cut(s) 93, 189, 484
DpnII GATC 3 cut(s) 91, 187, 482
DrdI GACNNNNNNGTC 1 cut(s) 125
DseDI GACNNNNNNGTC 1 cut(s) 125
EaeI YGGCCR 1 cut(s) 13
EciI GGCGGA 1 cut(s) 377
Eco130I CCWWGG 1 cut(s) 16
Eco147I AGGCCT 1 cut(s) 388
Eco31I GGTCTC 1 cut(s) 464
Eco47I GGWCC 3 cut(s) 23, 142, 516
Eco57I CTGAAG 1 cut(s) 25
Eco72I CACGTG 1 cut(s) 166
EcoO109I RGGNCCY 2 cut(s) 45, 142
EcoRII CCWGG 1 cut(s) 138
EcoT14I CCWWGG 1 cut(s) 16
ErhI CCWWGG 1 cut(s) 16
Esp3I CGTCTC 3 cut(s) 247, 287, 490
FaiI YATR 1 cut(s) 447
FaqI GGGAC 2 cut(s) 128, 359
FspBI CTAG 1 cut(s) 536
GsaI CCCAGC 1 cut(s) 195
GsuI CTGGAG 1 cut(s) 456
HaeIII GGCC 5 cut(s) 15, 38, 46, 249, 388
HapII CCGG 4 cut(s) 12, 246, 416, 567
HgaI GACGC 1 cut(s) 229
Hin1I GRCGYC 1 cut(s) 240
HinfI GANTC 4 cut(s) 62, 179, 230, 422
HpaII CCGG 4 cut(s) 12, 246, 416, 567
Hpy166II GTNNAC 2 cut(s) 23, 61
Hpy188I TCNGA 2 cut(s) 229, 275
Hpy188III TCNNGA 1 cut(s) 589
Hpy8I GTNNAC 2 cut(s) 23, 61
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 2 cut(s) 49, 280
HpyCH4IV ACGT 2 cut(s) 165, 296
HpyCH4V TGCA 2 cut(s) 315, 370
HpyF10VI GCNNNNNNNGC 2 cut(s) 246, 312
HpyF3I CTNAG 3 cut(s) 286, 468, 491
HpySE526I ACGT 2 cut(s) 165, 296
Hsp92I GRCGYC 1 cut(s) 240
Kzo9I GATC 3 cut(s) 91, 187, 482
LmnI GCTCC 4 cut(s) 78, 216, 275, 332
LweI GCATC 3 cut(s) 324, 357, 582
MaeI CTAG 1 cut(s) 536
MaeII ACGT 2 cut(s) 165, 296
MaeIII GTNAC 1 cut(s) 166
MalI GATC 3 cut(s) 93, 189, 484
MboI GATC 3 cut(s) 91, 187, 482
MboII GAAGA 3 cut(s) 106, 552, 555
MluCI AATT 3 cut(s) 279, 331, 546
MlyI GAGTC 4 cut(s) 56, 173, 224, 431
MmeI TCCRAC 1 cut(s) 378
MspA1I CMGCKG 1 cut(s) 176
MspI CCGG 4 cut(s) 12, 246, 416, 567
MspR9I CCNGG 2 cut(s) 140, 568
MvaI CCWGG 1 cut(s) 140
MwoI GCNNNNNNNGC 2 cut(s) 246, 312
NciI CCSGG 1 cut(s) 568
NdeII GATC 3 cut(s) 91, 187, 482
NlaIV GGNNCC 2 cut(s) 25, 144
NmuCI GTSAC 1 cut(s) 166
NspV TTCGAA 1 cut(s) 336
PceI AGGCCT 1 cut(s) 388
PcsI WCGNNNNNNNCGW 2 cut(s) 87, 162
PflMI CCANNNNNTGG 1 cut(s) 34
PleI GAGTC 4 cut(s) 56, 173, 224, 430
PmaCI CACGTG 1 cut(s) 166
PmlI CACGTG 1 cut(s) 166
PpsI GAGTC 4 cut(s) 56, 173, 224, 430
Ppu21I YACGTR 1 cut(s) 166
PpuMI RGGWCCY 1 cut(s) 142
Psp5II RGGWCCY 1 cut(s) 142
Psp6I CCWGG 1 cut(s) 138
PspCI CACGTG 1 cut(s) 166
PspFI CCCAGC 1 cut(s) 191
PspGI CCWGG 1 cut(s) 138
PspN4I GGNNCC 2 cut(s) 25, 144
PspPI GGNCC 4 cut(s) 23, 45, 142, 516
PspPPI RGGWCCY 1 cut(s) 142
Sau3AI GATC 3 cut(s) 91, 187, 482
Sau96I GGNCC 4 cut(s) 23, 45, 142, 516
SchI GAGTC 4 cut(s) 56, 173, 224, 431
ScrFI CCNGG 2 cut(s) 140, 568
SetI ASST 9 cut(s) 22, 144, 168, 173, 197, 299, 308, 329, 469
SfaNI GCATC 3 cut(s) 324, 357, 582
SfuI TTCGAA 1 cut(s) 336
SinI GGWCC 3 cut(s) 23, 142, 516
Sse9I AATT 3 cut(s) 279, 331, 546
SseBI AGGCCT 1 cut(s) 388
SsiI CCGC 2 cut(s) 174, 362
SspMI CTAG 1 cut(s) 536
StuI AGGCCT 1 cut(s) 388
StyD4I CCNGG 2 cut(s) 138, 566
StyI CCWWGG 1 cut(s) 16
TaiI ACGT 2 cut(s) 168, 299
TaqI TCGA 4 cut(s) 81, 117, 156, 336
TaqII GACCGA 1 cut(s) 541
TasI AATT 3 cut(s) 279, 331, 546
TscAI CASTG 2 cut(s) 39, 495
TseFI GTSAC 1 cut(s) 166
Tsp45I GTSAC 1 cut(s) 166
TspDTI ATGAA 1 cut(s) 442
TspGWI ACGGA 3 cut(s) 124, 508, 557
TspRI CASTG 2 cut(s) 39, 495
Van91I CCANNNNNTGG 1 cut(s) 34
VpaK11BI GGWCC 3 cut(s) 23, 142, 516
XapI RAATTY 1 cut(s) 546
XspI CTAG 1 cut(s) 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.