Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8104876.1

Orthogroup ID

OG0009422

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 605

Gene Structure 605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8104876.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ggacatcttcgacgacccggtcgccgccgcccaggtccctcgcctcctcgacagccacgtgtcctcccccgactcctccgatcccagctaccgcaccagattgctcctccaccacccttccgactccatcggcgtctccggcctcctcgtcctcccccaagccttcggagcaatttacttaggggagacgttttgcagctacattagcatcaataacagctccaatttcgaagtcagggacattattatcaaggcggagatgcaaacagagcggcagaggcttgtgctgttggagacgtcgaaatcgccggttgagtccattcgtgccggagggcgttatgacttcattgtggagcacgatgtgaaggaactcggagctcacac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF974

Protein Analysis

128

Amino Acids

14.14

Weight (kDa)

5.05

Isoelectric Point (pI)

34.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47960
fragaria_vesca	FvH4_3g04870 FvH4_3g04870
malus_domestica	MD05G1316100.v1.1 MD10G1296600.v1.1
prunus_persica	Prupe.4G044000_v2.0.a1
pyrus_communis	pycom05g29320 pycom10g24940
rosa_chinensis	RchiOBHm_Chr5g0008031
rosa_laevigata	RLG00000031529
rosa_multiflora	Rmu_co8104876.1_g000001 Rmu_sc0007348.1_g000002
rosa_roxburghii	Rroxscaffold_1G00068440
rosa_rugosa	Rorug04G0432700 Rorug04G0432800
rosa_samantha	Rh5AG060800 Rh5BG057600 Rh5CG067700 Rh5DG056800 Rh7AG388200 Rh7CG407500
rosa_wichuraiana	Rw5G005980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	18
AatII	GACGTC	1 cut(s)	300
AccBSI	CCGCTC	1 cut(s)	272
AciI	CCGC	5 cut(s)	25, 28, 92, 255, 272
AclWI	GGATC	1 cut(s)	75
AcvI	CACGTG	1 cut(s)	59
AcyI	GRCGYC	2 cut(s)	133, 297
AdeI	CACNNNGTG	1 cut(s)	362
AflIII	ACRYGT	1 cut(s)	58
AjnI	CCWGG	1 cut(s)	31
AluBI	AGCT	4 cut(s)	88, 199, 220, 378
AluI	AGCT	4 cut(s)	88, 199, 220, 378
Alw21I	GWGCWC	2 cut(s)	358, 380
Alw26I	GTCTC	3 cut(s)	140, 180, 288
AlwI	GGATC	1 cut(s)	75
AoxI	GGCC	1 cut(s)	140
ApeKI	GCWGC	1 cut(s)	196
AspS9I	GGNCC	1 cut(s)	35
AsuC2I	CCSGG	1 cut(s)	18
AsuII	TTCGAA	1 cut(s)	229
AvaII	GGWCC	1 cut(s)	35
BanII	GRGCYC	1 cut(s)	380
BbrPI	CACGTG	1 cut(s)	59
Bbv12I	GWGCWC	2 cut(s)	358, 380
BbvI	GCAGC	1 cut(s)	208
BccI	CCATC	1 cut(s)	135
BciT130I	CCWGG	1 cut(s)	33
BcnI	CCSGG	1 cut(s)	18
BcoDI	GTCTC	3 cut(s)	140, 180, 288
BisI	GCNGC	4 cut(s)	25, 28, 197, 273
BlsI	GCNGC	4 cut(s)	26, 29, 198, 274
Bme1390I	CCNGG	2 cut(s)	18, 33
Bme18I	GGWCC	1 cut(s)	35
BmgT120I	GGNCC	1 cut(s)	35
BmiI	GGNNCC	1 cut(s)	37
BmrFI	CCNGG	2 cut(s)	18, 33
BmsI	GCATC	2 cut(s)	217, 250
Bpu14I	TTCGAA	1 cut(s)	229
BpuMI	CCSGG	1 cut(s)	18
BsaAI	YACGTR	1 cut(s)	59
BsaHI	GRCGYC	2 cut(s)	133, 297
BsaJI	CCNNGG	1 cut(s)	31
BsaXI	ACNNNNNCTCC	2 cut(s)	48, 78
Bse118I	RCCGGY	1 cut(s)	308
BseBI	CCWGG	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	31
BseRI	GAGGAG	4 cut(s)	36, 65, 96, 135
BseXI	GCAGC	1 cut(s)	208
BseYI	CCCAGC	1 cut(s)	84
Bsh1285I	CGRYCG	1 cut(s)	22
BshFI	GGCC	1 cut(s)	142
BsiEI	CGRYCG	1 cut(s)	22
BsiHKAI	GWGCWC	2 cut(s)	358, 380
BsiSI	CCGG	4 cut(s)	18, 139, 309, 328
BslFI	GGGAC	2 cut(s)	21, 252
BsmAI	GTCTC	3 cut(s)	140, 180, 288
BsmBI	CGTCTC	3 cut(s)	140, 180, 288
BsmFI	GGGAC	2 cut(s)	21, 252
BsnI	GGCC	1 cut(s)	142
Bsp119I	TTCGAA	1 cut(s)	229
Bsp1286I	GDGCHC	2 cut(s)	358, 380
Bsp143I	GATC	1 cut(s)	80
BspACI	CCGC	5 cut(s)	25, 28, 92, 255, 272
BspANI	GGCC	1 cut(s)	142
BspLI	GGNNCC	1 cut(s)	37
BspPI	GGATC	1 cut(s)	75
BspT104I	TTCGAA	1 cut(s)	229
BsrBI	CCGCTC	1 cut(s)	272
BsrFI	RCCGGY	1 cut(s)	308
BssAI	RCCGGY	1 cut(s)	308
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	1 cut(s)	80
BssNI	GRCGYC	2 cut(s)	133, 297
Bst2UI	CCWGG	1 cut(s)	33
BstACI	GRCGYC	2 cut(s)	133, 297
BstBAI	YACGTR	1 cut(s)	59
BstBI	TTCGAA	1 cut(s)	229
BstDEI	CTNAG	1 cut(s)	179
BstKTI	GATC	1 cut(s)	83
BstMAI	GTCTC	3 cut(s)	140, 180, 288
BstMBI	GATC	1 cut(s)	80
BstMCI	CGRYCG	1 cut(s)	22
BstMWI	GCNNNNNNNGC	5 cut(s)	139, 168, 205, 269, 278
BstNI	CCWGG	1 cut(s)	33
BstSCI	CCNGG	2 cut(s)	16, 31
BstV1I	GCAGC	1 cut(s)	208
BsuRI	GGCC	1 cut(s)	142
Cfr10I	RCCGGY	1 cut(s)	308
Cfr13I	GGNCC	1 cut(s)	35
CseI	GACGC	1 cut(s)	122
CviJI	RGCY	8 cut(s)	55, 88, 142, 162, 199, 220, 281, 378
CviKI_1	RGCY	8 cut(s)	55, 88, 142, 162, 199, 220, 281, 378
DdeI	CTNAG	1 cut(s)	179
DpnI	GATC	1 cut(s)	82
DpnII	GATC	1 cut(s)	80
DraIII	CACNNNGTG	1 cut(s)	362
DrdI	GACNNNNNNGTC	1 cut(s)	18
DseDI	GACNNNNNNGTC	1 cut(s)	18
EciI	GGCGGA	1 cut(s)	270
Ecl136II	GAGCTC	1 cut(s)	378
Eco24I	GRGCYC	1 cut(s)	380
Eco47I	GGWCC	1 cut(s)	35
Eco53kI	GAGCTC	1 cut(s)	378
Eco72I	CACGTG	1 cut(s)	59
EcoICRI	GAGCTC	1 cut(s)	378
EcoO109I	RGGNCCY	1 cut(s)	35
EcoRII	CCWGG	1 cut(s)	31
EcoT38I	GRGCYC	1 cut(s)	380
Esp3I	CGTCTC	3 cut(s)	140, 180, 288
FaiI	YATR	1 cut(s)	340
FaqI	GGGAC	2 cut(s)	21, 252
Fnu4HI	GCNGC	4 cut(s)	25, 28, 197, 273
FriOI	GRGCYC	1 cut(s)	380
Fsp4HI	GCNGC	4 cut(s)	25, 28, 197, 273
GluI	GCNGC	4 cut(s)	25, 28, 197, 273
GsaI	CCCAGC	1 cut(s)	88
HaeIII	GGCC	1 cut(s)	142
HapII	CCGG	4 cut(s)	18, 139, 309, 328
HgaI	GACGC	1 cut(s)	122
Hin1I	GRCGYC	2 cut(s)	133, 297
HinfI	GANTC	3 cut(s)	72, 123, 315
HpaII	CCGG	4 cut(s)	18, 139, 309, 328
Hpy188I	TCNGA	4 cut(s)	80, 122, 168, 375
Hpy99I	CGWCG	2 cut(s)	15, 302
HpyAV	CCTTC	3 cut(s)	127, 173, 359
HpyCH4IV	ACGT	3 cut(s)	58, 189, 297
HpyCH4V	TGCA	2 cut(s)	196, 263
HpyF10VI	GCNNNNNNNGC	5 cut(s)	139, 168, 205, 269, 278
HpyF3I	CTNAG	1 cut(s)	179
HpySE526I	ACGT	3 cut(s)	58, 189, 297
Hsp92I	GRCGYC	2 cut(s)	133, 297
Kzo9I	GATC	1 cut(s)	80
LmnI	GCTCC	5 cut(s)	109, 168, 225, 353, 375
LpnPI	CCDG	9 cut(s)	18, 31, 45, 98, 110, 152, 221, 322, 341
Lsp1109I	GCAGC	1 cut(s)	208
LweI	GCATC	2 cut(s)	217, 250
MaeII	ACGT	3 cut(s)	58, 189, 297
MalI	GATC	1 cut(s)	82
MbiI	CCGCTC	1 cut(s)	272
MboI	GATC	1 cut(s)	80
MhlI	GDGCHC	2 cut(s)	358, 380
MluCI	AATT	2 cut(s)	172, 224
MlyI	GAGTC	3 cut(s)	66, 117, 324
MmeI	TCCRAC	2 cut(s)	145, 271
MspI	CCGG	4 cut(s)	18, 139, 309, 328
MspR9I	CCNGG	2 cut(s)	18, 33
MvaI	CCWGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	5 cut(s)	139, 168, 205, 269, 278
NciI	CCSGG	1 cut(s)	18
NdeII	GATC	1 cut(s)	80
NlaIV	GGNNCC	1 cut(s)	37
NspV	TTCGAA	1 cut(s)	229
PcsI	WCGNNNNNNNCGW	1 cut(s)	55
PflFI	GACNNNGTC	1 cut(s)	18
PkrI	GCNGC	4 cut(s)	26, 29, 198, 274
PleI	GAGTC	3 cut(s)	66, 117, 323
PmaCI	CACGTG	1 cut(s)	59
PmlI	CACGTG	1 cut(s)	59
PpsI	GAGTC	3 cut(s)	66, 117, 323
Ppu21I	YACGTR	1 cut(s)	59
PpuMI	RGGWCCY	1 cut(s)	35
Psp124BI	GAGCTC	1 cut(s)	380
Psp5II	RGGWCCY	1 cut(s)	35
Psp6I	CCWGG	1 cut(s)	31
PspCI	CACGTG	1 cut(s)	59
PspFI	CCCAGC	1 cut(s)	84
PspGI	CCWGG	1 cut(s)	31
PspN4I	GGNNCC	1 cut(s)	37
PspPI	GGNCC	1 cut(s)	35
PspPPI	RGGWCCY	1 cut(s)	35
PsyI	GACNNNGTC	1 cut(s)	18
SacI	GAGCTC	1 cut(s)	380
SatI	GCNGC	4 cut(s)	25, 28, 197, 273
Sau3AI	GATC	1 cut(s)	80
Sau96I	GGNCC	1 cut(s)	35
SchI	GAGTC	3 cut(s)	66, 117, 324
ScrFI	CCNGG	2 cut(s)	18, 33
SduI	GDGCHC	2 cut(s)	358, 380
SetI	ASST	8 cut(s)	37, 61, 90, 192, 201, 222, 300, 380
SfaNI	GCATC	2 cut(s)	217, 250
SfuI	TTCGAA	1 cut(s)	229
SinI	GGWCC	1 cut(s)	35
Sse9I	AATT	2 cut(s)	172, 224
SsiI	CCGC	5 cut(s)	25, 28, 92, 255, 272
SstI	GAGCTC	1 cut(s)	380
StyD4I	CCNGG	2 cut(s)	16, 31
TaiI	ACGT	3 cut(s)	61, 192, 300
TaqI	TCGA	4 cut(s)	10, 49, 229, 300
TasI	AATT	2 cut(s)	172, 224
TauI	GCSGC	3 cut(s)	27, 30, 275
TseI	GCWGC	1 cut(s)	196
TspDTI	ATGAA	1 cut(s)	335
Tth111I	GACNNNGTC	1 cut(s)	18
VpaK11BI	GGWCC	1 cut(s)	35
ZraI	GACGTC	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.