Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007348.1

Orthogroup ID

OG0009422

Physical Location & Seq

Genomic Coordinates Reverse (-)

2762 .. 6666

Gene Structure 3905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007348.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

atgagtagcaccgggcaaggtggaccccactcactggccttcagggtgatgcgtctctgcaagccttcattccaggtggactctattccgctcctgctcgaccccgccgatctcctcgtcggcgaggacatcttcgacgacccggtcgccgccgcccaggtccctcgcctcctcgacagccacgtgtcctcccccgactcctccgaccccagctaccgcaccagattgctcctccaccacccctccgactccatcggcgtctccggcctcctcgtcctcccccaagccttcggagcaatttacttaggggagacgttttgtagctacattagcatcaataacagctccaatttcgaagtcagggacattattatcaaggcggagatgcaaacagagaggcagaggcttgtgctgttggagacgtcgaaatcgccggttgagtccattcgtgccggagggcgttatgacttcattgttgagcacgatgtgaaggaactcggagctcacacgttggtgtgcactgcgttgtacaatgatggtgacggcgagcgtaaatatctaccgcaattcttcaaattcattgtggcaaatcctctttcggtacggactaaggtccgtgttgttaagtttgagcctgctgggcattggggtgcaaaacttctaaaagctgatgaacaccattctgagacgaaatctcaaacaagagagatgtttaagccaccggttctcatcagatctggcggaggagttcgtaactatctttatcagttaatatcacatggctctgcccaaacgaaagtggagggaagcaatattcttggtaaacttcagataacgtggcgaacaaatctgggtgaacctggtcgcctacaaacacagcaaattatgggcactcccataacacgaaaggatattgagttgcaagttgtggagataccatctggcatcaaattggaaagacccttttcgctacacttgaaattagcaaatgagacagaaaaagaacttggcccttttgaagtttctttatcacaagatgactcacgcgaggagaaggttgtcgtgattaatggtcttcaaactgtggtatttcccagtgttgaagcatttggttccaaggattttcatctgaacctcattgctaccaaacttggagttcagaagatcacaggcattaccgtttttaacacaatggagaggaaatcatacgaccctttgccagatgtagagatatttgtggatctggactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF974

Protein Analysis

416

Amino Acids

46.2

Weight (kDa)

5.98

Isoelectric Point (pI)

31.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47960
fragaria_vesca	FvH4_3g04870 FvH4_3g04870
malus_domestica	MD05G1316100.v1.1 MD10G1296600.v1.1
prunus_persica	Prupe.4G044000_v2.0.a1
pyrus_communis	pycom05g29320 pycom10g24940
rosa_chinensis	RchiOBHm_Chr5g0008031
rosa_laevigata	RLG00000031529
rosa_multiflora	Rmu_co8104876.1_g000001 Rmu_sc0007348.1_g000002
rosa_roxburghii	Rroxscaffold_1G00068440
rosa_rugosa	Rorug04G0432700 Rorug04G0432800
rosa_samantha	Rh5AG060800 Rh5BG057600 Rh5CG067700 Rh5DG056800 Rh7AG388200 Rh7CG407500
rosa_wichuraiana	Rw5G005980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	143
AatII	GACGTC	1 cut(s)	425
AccB7I	CCANNNNNTGG	1 cut(s)	34
AccBSI	CCGCTC	1 cut(s)	91
AccII	CGCG	1 cut(s)	1047
AciI	CCGC	8 cut(s)	89, 105, 150, 153, 217, 380, 563, 741
AclWI	GGATC	1 cut(s)	1248
AcsI	RAATTY	1 cut(s)	575
AcuI	CTGAAG	2 cut(s)	25, 812
AcvI	CACGTG	1 cut(s)	184
AcyI	GRCGYC	2 cut(s)	258, 422
AdeI	CACNNNGTG	1 cut(s)	487
AfaI	GTAC	2 cut(s)	530, 603
AfiI	CCNNNNNNNGG	1 cut(s)	34
AflIII	ACRYGT	2 cut(s)	183, 507
AgeI	ACCGGT	1 cut(s)	721
AgsI	TTSAA	5 cut(s)	574, 979, 1019, 1079, 1103
AjnI	CCWGG	3 cut(s)	72, 156, 859
AjuI	GAANNNNNNNTTGG	2 cut(s)	990, 1022
AleI	CACNNNNGTG	1 cut(s)	512
AluBI	AGCT	5 cut(s)	213, 324, 345, 503, 668
AluI	AGCT	5 cut(s)	213, 324, 345, 503, 668
Alw21I	GWGCWC	3 cut(s)	483, 505, 521
Alw26I	GTCTC	6 cut(s)	59, 265, 305, 413, 680, 986
Alw44I	GTGCAC	1 cut(s)	517
AlwI	GGATC	1 cut(s)	1248
AoxI	GGCC	3 cut(s)	36, 265, 1009
ApaLI	GTGCAC	1 cut(s)	517
ApoI	RAATTY	1 cut(s)	575
AseI	ATTAAT	1 cut(s)	1068
AsiGI	ACCGGT	1 cut(s)	721
AspS9I	GGNCC	4 cut(s)	23, 160, 613, 1010
AsuC2I	CCSGG	2 cut(s)	13, 143
AsuHPI	GGTGA	3 cut(s)	58, 551, 866
AsuII	TTCGAA	1 cut(s)	354
AvaII	GGWCC	3 cut(s)	23, 160, 613
BaeGI	GKGCMC	2 cut(s)	521, 893
BanII	GRGCYC	1 cut(s)	505
BbrPI	CACGTG	1 cut(s)	184
BbsI	GAAGAC	1 cut(s)	1067
Bbv12I	GWGCWC	3 cut(s)	483, 505, 521
BccI	CCATC	3 cut(s)	260, 530, 946
BceAI	ACGGC	1 cut(s)	559
BciT130I	CCWGG	3 cut(s)	74, 158, 861
BcnI	CCSGG	2 cut(s)	13, 143
BcoDI	GTCTC	6 cut(s)	59, 265, 305, 413, 680, 986
BglI	GCCNNNNNGGC	1 cut(s)	640
BglII	AGATCT	1 cut(s)	734
BisI	GCNGC	2 cut(s)	150, 153
BlsI	GCNGC	2 cut(s)	151, 154
Bme1390I	CCNGG	5 cut(s)	13, 74, 143, 158, 861
Bme18I	GGWCC	3 cut(s)	23, 160, 613
BmgT120I	GGNCC	4 cut(s)	23, 160, 613, 1010
BmiI	GGNNCC	3 cut(s)	25, 162, 1114
BmrFI	CCNGG	5 cut(s)	13, 74, 143, 158, 861
BmrI	ACTGGG	1 cut(s)	1089
BmsI	GCATC	4 cut(s)	39, 342, 375, 954
BmuI	ACTGGG	1 cut(s)	1089
BoxI	GACNNNNGTC	1 cut(s)	611
BpiI	GAAGAC	1 cut(s)	1067
Bpu14I	TTCGAA	1 cut(s)	354
BpuMI	CCSGG	2 cut(s)	13, 143
BsaAI	YACGTR	1 cut(s)	184
BsaBI	GATNNNNATC	1 cut(s)	1125
BsaHI	GRCGYC	2 cut(s)	258, 422
BsaJI	CCNNGG	2 cut(s)	156, 1116
BsaWI	WCCGGW	1 cut(s)	721
BsaXI	ACNNNNNCTCC	4 cut(s)	173, 203, 227, 257
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse118I	RCCGGY	2 cut(s)	433, 721
Bse1I	ACTGG	2 cut(s)	39, 1095
Bse3DI	GCAATG	1 cut(s)	1137
Bse8I	GATNNNNATC	1 cut(s)	1125
BseBI	CCWGG	3 cut(s)	74, 158, 861
BseDI	CCNNGG	2 cut(s)	156, 1116
BseJI	GATNNNNATC	1 cut(s)	1125
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMI	GCAATG	1 cut(s)	1137
BseMII	CTCAG	1 cut(s)	675
BseNI	ACTGG	2 cut(s)	39, 1095
BseRI	GAGGAG	7 cut(s)	104, 161, 190, 221, 260, 759, 1064
BseSI	GKGCMC	2 cut(s)	521, 893
BseYI	CCCAGC	2 cut(s)	209, 638
Bsh1236I	CGCG	1 cut(s)	1047
Bsh1285I	CGRYCG	1 cut(s)	147
BshFI	GGCC	3 cut(s)	38, 267, 1011
BshTI	ACCGGT	1 cut(s)	721
BsiEI	CGRYCG	1 cut(s)	147
BsiHKAI	GWGCWC	3 cut(s)	483, 505, 521
BsiSI	CCGG	6 cut(s)	12, 143, 264, 434, 453, 722
BslFI	GGGAC	2 cut(s)	146, 377
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmAI	GTCTC	6 cut(s)	59, 265, 305, 413, 680, 986
BsmBI	CGTCTC	5 cut(s)	59, 265, 305, 413, 680
BsmFI	GGGAC	2 cut(s)	146, 377
BsnI	GGCC	3 cut(s)	38, 267, 1011
Bsp119I	TTCGAA	1 cut(s)	354
Bsp1286I	GDGCHC	4 cut(s)	483, 505, 521, 893
Bsp1407I	TGTACA	1 cut(s)	528
Bsp143I	GATC	4 cut(s)	109, 734, 1164, 1240
BspACI	CCGC	8 cut(s)	89, 105, 150, 153, 217, 380, 563, 741
BspANI	GGCC	3 cut(s)	38, 267, 1011
BspCNI	CTCAG	1 cut(s)	676
BspFNI	CGCG	1 cut(s)	1047
BspLI	GGNNCC	3 cut(s)	25, 162, 1114
BspPI	GGATC	1 cut(s)	1248
BspT104I	TTCGAA	1 cut(s)	354
BsrBI	CCGCTC	1 cut(s)	91
BsrDI	GCAATG	1 cut(s)	1137
BsrFI	RCCGGY	2 cut(s)	433, 721
BsrGI	TGTACA	1 cut(s)	528
BsrI	ACTGG	2 cut(s)	39, 1095
BssAI	RCCGGY	2 cut(s)	433, 721
BssECI	CCNNGG	2 cut(s)	156, 1116
BssMI	GATC	4 cut(s)	109, 734, 1164, 1240
BssNI	GRCGYC	2 cut(s)	258, 422
BssT1I	CCWWGG	1 cut(s)	1116
Bst2UI	CCWGG	3 cut(s)	74, 158, 861
Bst4CI	ACNGT	2 cut(s)	1084, 1180
BstACI	GRCGYC	2 cut(s)	258, 422
BstAUI	TGTACA	1 cut(s)	528
BstBAI	YACGTR	1 cut(s)	184
BstBI	TTCGAA	1 cut(s)	354
BstC8I	GCNNGC	3 cut(s)	62, 548, 636
BstDEI	CTNAG	3 cut(s)	304, 609, 684
BstFNI	CGCG	1 cut(s)	1047
BstKTI	GATC	4 cut(s)	112, 737, 1167, 1243
BstMAI	GTCTC	6 cut(s)	59, 265, 305, 413, 680, 986
BstMBI	GATC	4 cut(s)	109, 734, 1164, 1240
BstMCI	CGRYCG	1 cut(s)	147
BstMWI	GCNNNNNNNGC	4 cut(s)	264, 293, 330, 640
BstNI	CCWGG	3 cut(s)	74, 158, 861
BstPAI	GACNNNNGTC	1 cut(s)	611
BstSCI	CCNGG	5 cut(s)	11, 72, 141, 156, 859
BstSLI	GKGCMC	2 cut(s)	521, 893
BstUI	CGCG	1 cut(s)	1047
BstV2I	GAAGAC	1 cut(s)	1067
BstX2I	RGATCY	2 cut(s)	734, 1240
BstYI	RGATCY	2 cut(s)	734, 1240
BsuRI	GGCC	3 cut(s)	38, 267, 1011
BtsI	GCAGTG	1 cut(s)	519
BtsIMutI	CAGTG	3 cut(s)	32, 519, 1102
Cac8I	GCNNGC	3 cut(s)	62, 548, 636
Cfr10I	RCCGGY	2 cut(s)	433, 721
Cfr13I	GGNCC	4 cut(s)	23, 160, 613, 1010
CseI	GACGC	2 cut(s)	41, 247
CsiI	ACCWGGT	1 cut(s)	859
Csp6I	GTAC	2 cut(s)	529, 602
CspAI	ACCGGT	1 cut(s)	721
CviAII	CATG	1 cut(s)	779
CviQI	GTAC	2 cut(s)	529, 602
DdeI	CTNAG	3 cut(s)	304, 609, 684
DpnI	GATC	4 cut(s)	111, 736, 1166, 1242
DpnII	GATC	4 cut(s)	109, 734, 1164, 1240
DraIII	CACNNNGTG	1 cut(s)	487
DrdI	GACNNNNNNGTC	1 cut(s)	143
DseDI	GACNNNNNNGTC	1 cut(s)	143
EciI	GGCGGA	2 cut(s)	395, 756
Ecl136II	GAGCTC	1 cut(s)	503
Eco130I	CCWWGG	1 cut(s)	1116
Eco24I	GRGCYC	1 cut(s)	505
Eco47I	GGWCC	3 cut(s)	23, 160, 613
Eco53kI	GAGCTC	1 cut(s)	503
Eco57I	CTGAAG	2 cut(s)	25, 812
Eco72I	CACGTG	1 cut(s)	184
EcoICRI	GAGCTC	1 cut(s)	503
EcoO109I	RGGNCCY	1 cut(s)	160
EcoRII	CCWGG	3 cut(s)	72, 156, 859
EcoT14I	CCWWGG	1 cut(s)	1116
EcoT38I	GRGCYC	1 cut(s)	505
ErhI	CCWWGG	1 cut(s)	1116
Esp3I	CGTCTC	5 cut(s)	59, 265, 305, 413, 680
FaeI	CATG	1 cut(s)	782
FaiI	YATR	5 cut(s)	465, 780, 887, 899, 1207
FaqI	GGGAC	2 cut(s)	146, 377
FatI	CATG	1 cut(s)	778
FauI	CCCGC	1 cut(s)	112
Fnu4HI	GCNGC	2 cut(s)	150, 153
FriOI	GRGCYC	1 cut(s)	505
Fsp4HI	GCNGC	2 cut(s)	150, 153
GluI	GCNGC	2 cut(s)	150, 153
GsaI	CCCAGC	2 cut(s)	213, 642
HaeIII	GGCC	3 cut(s)	38, 267, 1011
HapII	CCGG	6 cut(s)	12, 143, 264, 434, 453, 722
HgaI	GACGC	2 cut(s)	41, 247
Hin1I	GRCGYC	2 cut(s)	258, 422
Hin1II	CATG	1 cut(s)	782
HinfI	GANTC	5 cut(s)	80, 197, 248, 440, 1040
HpaII	CCGG	6 cut(s)	12, 143, 264, 434, 453, 722
HphI	GGTGA	3 cut(s)	58, 551, 866
Hpy166II	GTNNAC	5 cut(s)	23, 79, 519, 824, 857
Hpy188I	TCNGA	9 cut(s)	205, 247, 293, 500, 685, 734, 831, 1131, 1161
Hpy188III	TCNNGA	2 cut(s)	1063, 1244
Hpy8I	GTNNAC	5 cut(s)	23, 79, 519, 824, 857
Hpy99I	CGWCG	3 cut(s)	122, 140, 427
HpyAV	CCTTC	5 cut(s)	49, 75, 298, 484, 1048
HpyCH4III	ACNGT	2 cut(s)	1084, 1180
HpyCH4IV	ACGT	5 cut(s)	183, 314, 422, 509, 836
HpyCH4V	TGCA	5 cut(s)	60, 388, 519, 653, 922
HpyF10VI	GCNNNNNNNGC	4 cut(s)	264, 293, 330, 640
HpyF3I	CTNAG	3 cut(s)	304, 609, 684
HpySE526I	ACGT	5 cut(s)	183, 314, 422, 509, 836
Hsp92I	GRCGYC	2 cut(s)	258, 422
Hsp92II	CATG	1 cut(s)	782
Kzo9I	GATC	4 cut(s)	109, 734, 1164, 1240
LmnI	GCTCC	5 cut(s)	96, 234, 293, 350, 500
LweI	GCATC	4 cut(s)	39, 342, 375, 954
MabI	ACCWGGT	1 cut(s)	859
MaeII	ACGT	5 cut(s)	183, 314, 422, 509, 836
MaeIII	GTNAC	2 cut(s)	539, 752
MalI	GATC	4 cut(s)	111, 736, 1166, 1242
MbiI	CCGCTC	1 cut(s)	91
MboI	GATC	4 cut(s)	109, 734, 1164, 1240
MboII	GAAGA	4 cut(s)	124, 562, 1067, 1174
MflI	RGATCY	2 cut(s)	734, 1240
MhlI	GDGCHC	4 cut(s)	483, 505, 521, 893
MluCI	AATT	7 cut(s)	297, 349, 566, 575, 882, 950, 980
MlyI	GAGTC	5 cut(s)	74, 191, 242, 449, 1034
MmeI	TCCRAC	3 cut(s)	228, 270, 396
MseI	TTAA	5 cut(s)	624, 714, 770, 1068, 1185
MslI	CAYNNNNRTG	2 cut(s)	512, 648
MspI	CCGG	6 cut(s)	12, 143, 264, 434, 453, 722
MspR9I	CCNGG	5 cut(s)	13, 74, 143, 158, 861
MvaI	CCWGG	3 cut(s)	74, 158, 861
MvnI	CGCG	1 cut(s)	1047
MwoI	GCNNNNNNNGC	4 cut(s)	264, 293, 330, 640
NciI	CCSGG	2 cut(s)	13, 143
NdeII	GATC	4 cut(s)	109, 734, 1164, 1240
NlaIII	CATG	1 cut(s)	782
NlaIV	GGNNCC	3 cut(s)	25, 162, 1114
NmuCI	GTSAC	1 cut(s)	539
NspV	TTCGAA	1 cut(s)	354
OliI	CACNNNNGTG	1 cut(s)	512
PcsI	WCGNNNNNNNCGW	2 cut(s)	105, 180
PflFI	GACNNNGTC	1 cut(s)	143
PflMI	CCANNNNNTGG	1 cut(s)	34
PinAI	ACCGGT	1 cut(s)	721
PkrI	GCNGC	2 cut(s)	151, 154
PleI	GAGTC	5 cut(s)	74, 191, 242, 448, 1034
PmaCI	CACGTG	1 cut(s)	184
PmlI	CACGTG	1 cut(s)	184
PpsI	GAGTC	5 cut(s)	74, 191, 242, 448, 1034
Ppu21I	YACGTR	1 cut(s)	184
PpuMI	RGGWCCY	1 cut(s)	160
PshAI	GACNNNNGTC	1 cut(s)	611
PshBI	ATTAAT	1 cut(s)	1068
Psp124BI	GAGCTC	1 cut(s)	505
Psp5II	RGGWCCY	1 cut(s)	160
Psp6I	CCWGG	3 cut(s)	72, 156, 859
PspCI	CACGTG	1 cut(s)	184
PspFI	CCCAGC	2 cut(s)	209, 638
PspGI	CCWGG	3 cut(s)	72, 156, 859
PspN4I	GGNNCC	3 cut(s)	25, 162, 1114
PspPI	GGNCC	4 cut(s)	23, 160, 613, 1010
PspPPI	RGGWCCY	1 cut(s)	160
PsuI	RGATCY	2 cut(s)	734, 1240
PsyI	GACNNNGTC	1 cut(s)	143
RsaI	GTAC	2 cut(s)	530, 603
RsaNI	GTAC	2 cut(s)	529, 602
RseI	CAYNNNNRTG	2 cut(s)	512, 648
SacI	GAGCTC	1 cut(s)	505
SaqAI	TTAA	5 cut(s)	624, 714, 770, 1068, 1185
SatI	GCNGC	2 cut(s)	150, 153
Sau3AI	GATC	4 cut(s)	109, 734, 1164, 1240
Sau96I	GGNCC	4 cut(s)	23, 160, 613, 1010
SchI	GAGTC	5 cut(s)	74, 191, 242, 449, 1034
ScrFI	CCNGG	5 cut(s)	13, 74, 143, 158, 861
SduI	GDGCHC	4 cut(s)	483, 505, 521, 893
SexAI	ACCWGGT	1 cut(s)	859
SfaNI	GCATC	4 cut(s)	39, 342, 375, 954
SfuI	TTCGAA	1 cut(s)	354
SinI	GGWCC	3 cut(s)	23, 160, 613
SmiMI	CAYNNNNRTG	2 cut(s)	512, 648
Sse9I	AATT	7 cut(s)	297, 349, 566, 575, 882, 950, 980
SsiI	CCGC	8 cut(s)	89, 105, 150, 153, 217, 380, 563, 741
SspI	AATATT	1 cut(s)	814
SstI	GAGCTC	1 cut(s)	505
StyD4I	CCNGG	5 cut(s)	11, 72, 141, 156, 859
StyI	CCWWGG	1 cut(s)	1116
TaaI	ACNGT	2 cut(s)	1084, 1180
TaiI	ACGT	5 cut(s)	186, 317, 425, 512, 839
TaqI	TCGA	5 cut(s)	99, 135, 174, 354, 425
TasI	AATT	7 cut(s)	297, 349, 566, 575, 882, 950, 980
TatI	WGTACW	1 cut(s)	528
TauI	GCSGC	2 cut(s)	152, 155
Tru1I	TTAA	5 cut(s)	624, 714, 770, 1068, 1185
Tru9I	TTAA	5 cut(s)	624, 714, 770, 1068, 1185
TscAI	CASTG	3 cut(s)	39, 526, 1102
TseFI	GTSAC	1 cut(s)	539
Tsp45I	GTSAC	1 cut(s)	539
TspDTI	ATGAA	5 cut(s)	57, 460, 568, 687, 1115
TspGWI	ACGGA	2 cut(s)	605, 619
TspRI	CASTG	3 cut(s)	39, 526, 1102
Tth111I	GACNNNGTC	1 cut(s)	143
Van91I	CCANNNNNTGG	1 cut(s)	34
VneI	GTGCAC	1 cut(s)	517
VpaK11BI	GGWCC	3 cut(s)	23, 160, 613
VspI	ATTAAT	1 cut(s)	1068
XapI	RAATTY	1 cut(s)	575
ZraI	GACGTC	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.