Prupe.4G044000_v2.0.a1

Trafficking protein particle complex subunit

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
2115548 .. 2119806
4259 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G044000.1

Sequence Viewer

Length: 1425 bp
ATGATATTACAGTGTTCGCCGGCACTGTCAAATACGTGCTCTGAAAAGAAGTTGGGTCTGAAAATTTGGCAAAACCCGATCCGATTCGAAGAGGAGAAGGAAGCGATGAGCAGCGGTCAAGGTGGACCCCACTCGCTGGCGTTCAGGGTGATGAGGCTGTGCAAGCCCTCATTCCAGGTTGACCCCATTCCCCTTCTCCTCGACCCGTCCGATCTCGTCGTCGGCGAGGACATCTTCGACGACCCAATTGCCTCCGCCCAACTTCCTCGCCTCCTCCACCACTCCCAAGTGTCCTCCTCCGACTCCTCCGATCTCAGCTACCGCTCCAGATTCCTCCTTCACCACCCCTCCGACTCTATCGGCCTCTCTGGCCTCCTCGTCCTCCCTCAAGCCTTCGGAGCAATTTATCTAGGGGAGACATTTTGTAGCTACATTAGTATCAATAACAGCTCCAATTTCGAAGTCAGGGACATTATAATCAAGGCAGAAATGCAAACAGAAAGGCAGAGGCTTTTGCTGTTGGACACGTCGAAATCGCCGGTTGAATCCATACGCGCAGGTGGCCGTTATGACTTCATTGTTGAACATGATGTCAAGGAACTCGGAGCTCACACGTTGGTCTGCACTGCATTGTACTATGACGGCGATGGTGAGCGTAAATATCTACCACAGTTCTTCAAATTCATCGTCGCCAATCCGCTCTCAGTCAGGACTAAGGTCCGTGTTGTTAAGGAAATCACATTCTTAGAAGCTTGCATTGAAAATCATACAAAGTCAAATCTTTTTATGGACCAAGTTGAGTTTGAGCCCGCTCAGCATTGGAGTGCAAAAATTCTAAAAGCTGACGAACACCATTCCGACAAGAATTCTCAAACACGAGAGACATTTAAGCCACCAATTCTCATCAAATCTGGTGGAGGAATTCATAACTATCTTTATCAGTTAAAATCACATGGTTCTGCCCAAACGAAAGTTGAGGGAAGCAATATACTTGGTAAACTTCAGATAACATGGCGCACTAATCTGGGTGAACCTGGTCGCCTACAAACACAGCAAATTATGGGCACTCCCATAATACGGAAGGATATTGAGTTGCATGTTGTGGAGGTACCATCTGCCATCAAGTTGGAAAGACCCTTTTCGCTACACTTGAAGTTAGCAAATGAGACAGATAAGGAACTCGGCCCCTTCGAAGTGTGGTTATCTCAAGACGATTCACGTGAGGAGAAGAAGGTTGTGATTAATGGTCTTCAAACAGTGGTTTTGCCGAGGGTTGAGGCGTTTGATTCCACAGATTTCCATCTGAACCTTATTGCTACTCAACTTGGAGTTCAGAGGATCACAGGAATTACCATTTTCAACACAAGAGAGAAACAAACATACGAACCCTTGCCAGATTTGGAGATTTTCGTGGATCTGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

475

Amino Acids

53.46

Weight (kDa)

5.84

Isoelectric Point (pI)

34.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 476
AarI CACCTGC 1 cut(s) 548
Acc36I ACCTGC 1 cut(s) 548
Acc65I GGTACC 1 cut(s) 1108
AccB1I GGYRCC 1 cut(s) 1108
AccB7I CCANNNNNTGG 1 cut(s) 136
AccBSI CCGCTC 3 cut(s) 324, 700, 812
AccII CGCG 1 cut(s) 555
AciI CCGC 5 cut(s) 114, 255, 322, 698, 810
AclWI GGATC 3 cut(s) 73, 1346, 1422
AcoI YGGCCR 1 cut(s) 562
AcsI RAATTY 5 cut(s) 63, 680, 831, 865, 921
AcuI CTGAAG 1 cut(s) 986
AcvI CACGTG 1 cut(s) 1220
AfaI GTAC 2 cut(s) 635, 1110
AfiI CCNNNNNNNGG 2 cut(s) 136, 1077
AflIII ACRYGT 2 cut(s) 525, 612
AgsI TTSAA 7 cut(s) 545, 584, 679, 761, 1153, 1253, 1360
AjiI CACGTC 1 cut(s) 528
AjnI CCWGG 2 cut(s) 174, 1033
AluBI AGCT 6 cut(s) 318, 429, 450, 608, 752, 842
AluI AGCT 6 cut(s) 318, 429, 450, 608, 752, 842
Alw21I GWGCWC 2 cut(s) 41, 610
Alw26I GTCTC 3 cut(s) 410, 875, 1160
AlwI GGATC 3 cut(s) 73, 1346, 1422
AoxI GGCC 4 cut(s) 361, 370, 562, 1183
ApeKI GCWGC 1 cut(s) 111
ApoI RAATTY 5 cut(s) 63, 680, 831, 865, 921
ArsI GACNNNNNNTTYG 2 cut(s) 672, 704
AseI ATTAAT 1 cut(s) 1242
Asp718I GGTACC 1 cut(s) 1108
AspLEI GCGC 2 cut(s) 557, 1017
AspS9I GGNCC 4 cut(s) 125, 718, 790, 1184
AsuHPI GGTGA 4 cut(s) 160, 332, 662, 1040
AsuII TTCGAA 3 cut(s) 87, 459, 1191
AvaII GGWCC 3 cut(s) 125, 718, 790
BaeGI GKGCMC 1 cut(s) 1067
BaeI ACNNNNGTAYC 2 cut(s) 421, 454
BanI GGYRCC 1 cut(s) 1108
BanII GRGCYC 2 cut(s) 610, 810
BauI CACGAG 1 cut(s) 876
BbrPI CACGTG 1 cut(s) 1220
BbsI GAAGAC 1 cut(s) 1241
Bbv12I GWGCWC 2 cut(s) 41, 610
BbvI GCAGC 1 cut(s) 123
BccI CCATC 4 cut(s) 641, 1120, 1127, 1308
BceAI ACGGC 2 cut(s) 549, 658
BcgI CGANNNNNNTGC 2 cut(s) 230, 264
BciT130I CCWGG 2 cut(s) 176, 1035
BcoDI GTCTC 3 cut(s) 410, 875, 1160
BfaI CTAG 1 cut(s) 410
BfuAI ACCTGC 1 cut(s) 548
BglI GCCNNNNNGGC 1 cut(s) 369
BisI GCNGC 1 cut(s) 112
BlpI GCTNAGC 1 cut(s) 813
BlsI GCNGC 1 cut(s) 113
Bme1390I CCNGG 2 cut(s) 176, 1035
Bme18I GGWCC 3 cut(s) 125, 718, 790
BmgBI CACGTC 1 cut(s) 528
BmgT120I GGNCC 4 cut(s) 125, 718, 790, 1184
BmiI GGNNCC 3 cut(s) 127, 1110, 1186
BmrFI CCNGG 2 cut(s) 176, 1035
BoxI GACNNNNGTC 1 cut(s) 716
BpiI GAAGAC 1 cut(s) 1241
BpmI CTGGAG 1 cut(s) 310
Bpu1102I GCTNAGC 1 cut(s) 813
Bpu14I TTCGAA 3 cut(s) 87, 459, 1191
BpuEI CTTGAG 2 cut(s) 372, 1191
BsaAI YACGTR 2 cut(s) 36, 1220
BsaBI GATNNNNATC 1 cut(s) 1299
BsaJI CCNNGG 1 cut(s) 1268
BsaXI ACNNNNNCTCC 2 cut(s) 332, 362
Bsc4I CCNNNNNNNGG 2 cut(s) 136, 1077
Bse118I RCCGGY 2 cut(s) 19, 538
Bse8I GATNNNNATC 1 cut(s) 1299
BseBI CCWGG 2 cut(s) 176, 1035
BseDI CCNNGG 1 cut(s) 1268
BseJI GATNNNNATC 1 cut(s) 1299
BseLI CCNNNNNNNGG 2 cut(s) 136, 1077
BseMII CTCAG 3 cut(s) 328, 717, 827
BseRI GAGGAG 7 cut(s) 107, 188, 263, 286, 295, 365, 1238
BseSI GKGCMC 1 cut(s) 1067
BseXI GCAGC 1 cut(s) 123
BsgI GTGCAG 1 cut(s) 607
Bsh1236I CGCG 1 cut(s) 555
BshFI GGCC 4 cut(s) 363, 372, 564, 1185
BshNI GGYRCC 1 cut(s) 1108
BsiHKAI GWGCWC 2 cut(s) 41, 610
BsiSI CCGG 2 cut(s) 20, 539
BslFI GGGAC 1 cut(s) 482
BslI CCNNNNNNNGG 2 cut(s) 136, 1077
BsmAI GTCTC 3 cut(s) 410, 875, 1160
BsmFI GGGAC 1 cut(s) 482
BsnI GGCC 4 cut(s) 363, 372, 564, 1185
Bsp119I TTCGAA 3 cut(s) 87, 459, 1191
Bsp1286I GDGCHC 4 cut(s) 41, 610, 810, 1067
Bsp143I GATC 5 cut(s) 78, 211, 310, 1338, 1414
Bsp1720I GCTNAGC 1 cut(s) 813
BspACI CCGC 5 cut(s) 114, 255, 322, 698, 810
BspANI GGCC 4 cut(s) 363, 372, 564, 1185
BspCNI CTCAG 3 cut(s) 327, 716, 826
BspFNI CGCG 1 cut(s) 555
BspLI GGNNCC 3 cut(s) 127, 1110, 1186
BspMI ACCTGC 1 cut(s) 548
BspPI GGATC 3 cut(s) 73, 1346, 1422
BspT104I TTCGAA 3 cut(s) 87, 459, 1191
BspT107I GGYRCC 1 cut(s) 1108
BsrBI CCGCTC 3 cut(s) 324, 700, 812
BsrFI RCCGGY 2 cut(s) 19, 538
BssAI RCCGGY 2 cut(s) 19, 538
BssECI CCNNGG 1 cut(s) 1268
BssMI GATC 5 cut(s) 78, 211, 310, 1338, 1414
BssSI CACGAG 1 cut(s) 876
Bst2BI CACGAG 1 cut(s) 876
Bst2UI CCWGG 2 cut(s) 176, 1035
Bst4CI ACNGT 4 cut(s) 12, 27, 672, 1258
Bst6I CTCTTC 1 cut(s) 84
BstBAI YACGTR 2 cut(s) 36, 1220
BstBI TTCGAA 3 cut(s) 87, 459, 1191
BstC8I GCNNGC 5 cut(s) 21, 138, 164, 754, 810
BstDEI CTNAG 5 cut(s) 314, 703, 714, 745, 813
BstFNI CGCG 1 cut(s) 555
BstHHI GCGC 2 cut(s) 557, 1017
BstKTI GATC 5 cut(s) 81, 214, 313, 1341, 1417
BstMAI GTCTC 3 cut(s) 410, 875, 1160
BstMBI GATC 5 cut(s) 78, 211, 310, 1338, 1414
BstMWI GCNNNNNNNGC 5 cut(s) 163, 369, 398, 561, 814
BstNI CCWGG 2 cut(s) 176, 1035
BstNSI RCATGY 1 cut(s) 1100
BstPAI GACNNNNGTC 1 cut(s) 716
BstSCI CCNGG 2 cut(s) 174, 1033
BstSLI GKGCMC 1 cut(s) 1067
BstUI CGCG 1 cut(s) 555
BstV1I GCAGC 1 cut(s) 123
BstV2I GAAGAC 1 cut(s) 1241
BstX2I RGATCY 1 cut(s) 1414
BstXI CCANNNNNNTGG 1 cut(s) 1126
BstYI RGATCY 1 cut(s) 1414
BsuRI GGCC 4 cut(s) 363, 372, 564, 1185
BtgZI GCGATG 2 cut(s) 119, 660
BtrI CACGTC 1 cut(s) 528
BtsI GCAGTG 1 cut(s) 624
BtsIMutI CAGTG 4 cut(s) 17, 23, 624, 1263
BveI ACCTGC 1 cut(s) 548
Cac8I GCNNGC 5 cut(s) 21, 138, 164, 754, 810
CfoI GCGC 2 cut(s) 557, 1017
Cfr10I RCCGGY 2 cut(s) 19, 538
Cfr13I GGNCC 4 cut(s) 125, 718, 790, 1184
CsiI ACCWGGT 1 cut(s) 1033
Csp6I GTAC 2 cut(s) 634, 1109
CspCI CAANNNNNGTGG 2 cut(s) 895, 930
CviAII CATG 4 cut(s) 587, 953, 1011, 1097
CviQI GTAC 2 cut(s) 634, 1109
DdeI CTNAG 5 cut(s) 314, 703, 714, 745, 813
DpnI GATC 5 cut(s) 80, 213, 312, 1340, 1416
DpnII GATC 5 cut(s) 78, 211, 310, 1338, 1414
EaeI YGGCCR 1 cut(s) 562
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
EciI GGCGGA 1 cut(s) 244
Ecl136II GAGCTC 1 cut(s) 608
Eco24I GRGCYC 2 cut(s) 610, 810
Eco47I GGWCC 3 cut(s) 125, 718, 790
Eco53kI GAGCTC 1 cut(s) 608
Eco57I CTGAAG 1 cut(s) 986
Eco72I CACGTG 1 cut(s) 1220
EcoICRI GAGCTC 1 cut(s) 608
EcoRI GAATTC 2 cut(s) 865, 921
EcoRII CCWGG 2 cut(s) 174, 1033
EcoT38I GRGCYC 2 cut(s) 610, 810
FaeI CATG 4 cut(s) 590, 956, 1014, 1100
FaqI GGGAC 1 cut(s) 482
FatI CATG 4 cut(s) 586, 952, 1010, 1096
FauI CCCGC 1 cut(s) 817
Fnu4HI GCNGC 1 cut(s) 112
FriOI GRGCYC 2 cut(s) 610, 810
Fsp4HI GCNGC 1 cut(s) 112
FspBI CTAG 1 cut(s) 410
GlaI GCGC 2 cut(s) 556, 1016
GluI GCNGC 1 cut(s) 112
GsuI CTGGAG 1 cut(s) 310
HaeIII GGCC 4 cut(s) 363, 372, 564, 1185
HapII CCGG 2 cut(s) 20, 539
HhaI GCGC 2 cut(s) 557, 1017
Hin1II CATG 4 cut(s) 590, 956, 1014, 1100
Hin6I GCGC 2 cut(s) 555, 1015
HinP1I GCGC 2 cut(s) 555, 1015
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HindIII AAGCTT 1 cut(s) 750
HinfI GANTC 7 cut(s) 84, 302, 330, 353, 545, 1214, 1286
HpaII CCGG 2 cut(s) 20, 539
HphI GGTGA 4 cut(s) 160, 332, 662, 1040
Hpy166II GTNNAC 4 cut(s) 125, 181, 998, 1031
Hpy188III TCNNGA 4 cut(s) 327, 709, 1208, 1418
Hpy8I GTNNAC 4 cut(s) 125, 181, 998, 1031
Hpy99I CGWCG 5 cut(s) 221, 224, 242, 532, 692
HpyAV CCTTC 7 cut(s) 91, 203, 347, 403, 1075, 1198, 1225
HpyCH4III ACNGT 4 cut(s) 12, 27, 672, 1258
HpyCH4IV ACGT 4 cut(s) 35, 527, 614, 1219
HpyCH4V TGCA 7 cut(s) 162, 493, 624, 629, 756, 827, 1096
HpyF10VI GCNNNNNNNGC 5 cut(s) 163, 369, 398, 561, 814
HpyF3I CTNAG 5 cut(s) 314, 703, 714, 745, 813
HpySE526I ACGT 4 cut(s) 35, 527, 614, 1219
Hsp92II CATG 4 cut(s) 590, 956, 1014, 1100
HspAI GCGC 2 cut(s) 555, 1015
KpnI GGTACC 1 cut(s) 1112
KroI GCCGGC 1 cut(s) 19
KroNI GCCGGC 1 cut(s) 21
Kzo9I GATC 5 cut(s) 78, 211, 310, 1338, 1414
LmnI GCTCC 4 cut(s) 329, 398, 455, 605
Lsp1109I GCAGC 1 cut(s) 123
MabI ACCWGGT 1 cut(s) 1033
MaeI CTAG 1 cut(s) 410
MaeII ACGT 4 cut(s) 35, 527, 614, 1219
MalI GATC 5 cut(s) 80, 213, 312, 1340, 1416
MbiI CCGCTC 3 cut(s) 324, 700, 812
MboI GATC 5 cut(s) 78, 211, 310, 1338, 1414
MboII GAAGA 5 cut(s) 101, 226, 667, 1240, 1241
MfeI CAATTG 1 cut(s) 246
MflI RGATCY 1 cut(s) 1414
MhlI GDGCHC 4 cut(s) 41, 610, 810, 1067
MlyI GAGTC 2 cut(s) 296, 347
MmeI TCCRAC 5 cut(s) 324, 375, 501, 882, 1107
MroNI GCCGGC 1 cut(s) 19
MseI TTAA 4 cut(s) 729, 888, 944, 1242
MslI CAYNNNNRTG 1 cut(s) 822
MspA1I CMGCKG 1 cut(s) 114
MspI CCGG 2 cut(s) 20, 539
MspR9I CCNGG 2 cut(s) 176, 1035
MunI CAATTG 1 cut(s) 246
MvaI CCWGG 2 cut(s) 176, 1035
MvnI CGCG 1 cut(s) 555
MwoI GCNNNNNNNGC 5 cut(s) 163, 369, 398, 561, 814
NaeI GCCGGC 1 cut(s) 21
NdeII GATC 5 cut(s) 78, 211, 310, 1338, 1414
NgoMIV GCCGGC 1 cut(s) 19
NlaIII CATG 4 cut(s) 590, 956, 1014, 1100
NlaIV GGNNCC 3 cut(s) 127, 1110, 1186
NmeAIII GCCGAG 2 cut(s) 1161, 1293
NspI RCATGY 1 cut(s) 1100
NspV TTCGAA 3 cut(s) 87, 459, 1191
PaqCI CACCTGC 1 cut(s) 548
PcsI WCGNNNNNNNCGW 3 cut(s) 207, 222, 1188
PdiI GCCGGC 1 cut(s) 21
PfeI GAWTC 5 cut(s) 84, 330, 545, 1214, 1286
PflMI CCANNNNNTGG 1 cut(s) 136
PkrI GCNGC 1 cut(s) 113
PleI GAGTC 2 cut(s) 296, 347
PmaCI CACGTG 1 cut(s) 1220
PmlI CACGTG 1 cut(s) 1220
PpsI GAGTC 2 cut(s) 296, 347
Ppu21I YACGTR 2 cut(s) 36, 1220
PshAI GACNNNNGTC 1 cut(s) 716
PshBI ATTAAT 1 cut(s) 1242
PsiI TTATAA 1 cut(s) 476
Psp124BI GAGCTC 1 cut(s) 610
Psp6I CCWGG 2 cut(s) 174, 1033
PspCI CACGTG 1 cut(s) 1220
PspGI CCWGG 2 cut(s) 174, 1033
PspN4I GGNNCC 3 cut(s) 127, 1110, 1186
PspPI GGNCC 4 cut(s) 125, 718, 790, 1184
PsuI RGATCY 1 cut(s) 1414
RsaI GTAC 2 cut(s) 635, 1110
RsaNI GTAC 2 cut(s) 634, 1109
RseI CAYNNNNRTG 1 cut(s) 822
SacI GAGCTC 1 cut(s) 610
SaqAI TTAA 4 cut(s) 729, 888, 944, 1242
SatI GCNGC 1 cut(s) 112
Sau3AI GATC 5 cut(s) 78, 211, 310, 1338, 1414
Sau96I GGNCC 4 cut(s) 125, 718, 790, 1184
SchI GAGTC 2 cut(s) 296, 347
ScrFI CCNGG 2 cut(s) 176, 1035
SduI GDGCHC 4 cut(s) 41, 610, 810, 1067
SexAI ACCWGGT 1 cut(s) 1033
SfiI GGCCNNNNNGGCC 1 cut(s) 369
SfuI TTCGAA 3 cut(s) 87, 459, 1191
SinI GGWCC 3 cut(s) 125, 718, 790
SmiMI CAYNNNNRTG 1 cut(s) 822
SmlI CTYRAG 2 cut(s) 387, 1206
SmoI CTYRAG 2 cut(s) 387, 1206
SsiI CCGC 5 cut(s) 114, 255, 322, 698, 810
SspMI CTAG 1 cut(s) 410
SstI GAGCTC 1 cut(s) 610
StyD4I CCNGG 2 cut(s) 174, 1033
TaaI ACNGT 4 cut(s) 12, 27, 672, 1258
TaiI ACGT 4 cut(s) 38, 530, 617, 1222
TaqI TCGA 6 cut(s) 87, 201, 237, 459, 530, 1191
TatI WGTACW 1 cut(s) 633
TfiI GAWTC 5 cut(s) 84, 330, 545, 1214, 1286
Tru1I TTAA 4 cut(s) 729, 888, 944, 1242
Tru9I TTAA 4 cut(s) 729, 888, 944, 1242
TscAI CASTG 4 cut(s) 17, 30, 631, 1263
TseI GCWGC 1 cut(s) 111
TspDTI ATGAA 3 cut(s) 565, 673, 914
TspGWI ACGGA 2 cut(s) 710, 1093
TspRI CASTG 4 cut(s) 17, 30, 631, 1263
Van91I CCANNNNNTGG 1 cut(s) 136
VpaK11BI GGWCC 3 cut(s) 125, 718, 790
VspI ATTAAT 1 cut(s) 1242
XapI RAATTY 5 cut(s) 63, 680, 831, 865, 921
XceI RCATGY 1 cut(s) 1100
XspI CTAG 1 cut(s) 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.