RchiOBHm_Chr5g0008031

Trafficking protein particle complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0009422
Physical Location & Seq
Forward (+)
5169485 .. 5173906
4422 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28903

Sequence Viewer

Length: 1320 bp
ATGAGTAGCACCGGGCAAGGTGGACCCCACTCACTGGCCTTCAGGGTGATGCGTCTCTGCAAGCCTTCATTCCAGGTGGACTCTATTCCGCTCCTGCTCGACCCCGCCGATCTCCTCGTCGGCGAGGACATCTTCGACGACCCGGTCGCCGCCGCCCAGGTCCCTCGCCTCCTCGACAGCCACGTGTCCTCCCCCGACTCCTCCGATCCCAGCTACCGCACCAGATTGCTCCTCCACCACCCCTCCGACTCCATCGGCGTCTCCGGCCTCCTCGTCCTCCCCCAAGCCTTCGGAGCAATTTACTTAGGGGAGACGTTTTGTAGCTACATTAGCATCAATAACAGCTCCAATTTCGAAGTCAGGGACATTATTATCAAGGCGGAGATGCAAACAGAGAGGCAGAGGCTTGTGCTGTTGGAGACGTCGAAATCGCCGGTTGAGTCCATTCGTGCCGGAGGGCGTTATGACTTCATTGTTGAGCATGATGTGAAGGAACTCGGAGCTCACACGTTGGTGTGCACTGCGTTGTACAATGATGGTGACGGCGAGCGTAAATATCTACCGCAATTCTTCAAATTCATTGTGGCAAATCCTCTTTCGGTGCGGACTAAGGTCCGTGTTGTTAAGGAAACTACTTTTTTAGAAGCTTGCATTGAAAATCATACAAAATCAAATCTTTTTATGGACCAAGTTGAGTTTGAGCCTGCTGGGCATTGGGGTGCAAAACTTCTAAAAGCTGATGAACACCATTCTGAGATGAAATCTCAAACAAGAGAGATGTTTAAGCCACCGGTTCTCATCAGATCTGGCGGAGGAGTTCGTAACTATCTTTATCAGTTAATATCACATGGCTCTGCCCAAACGAAAGTGGAGGGAAGCAATATTCTTGGTAAACTTCAGATAACGTGGCGAACAAATCTGGGTGAACCTGGTCGCCTACAAACACAGCAAATTATGGGCACTCCCATAACACGAAAGGATATTGAGTTGCAAGTTGTGGAGATACCATCTGGCATCAAATTGGAAAGACCCTTTTCGCTACACTTGAAATTAGCAAATGAGACAGAAAAAGAACTTGGCCCTTTTGAAGTTTCTTTATCAGAAGATGACTCACGCGAGGAGAAGGTTGTCGTGATTAATGGTCTTCAAACTGTGGTATTTCCCAGTGTTGAAGCATTTGGTTCCAAGGATTTTCATCTGAACCTCATTGCTACCAAACTTGGAGTTCAGAAGATCACAGGCATTACCGTTTTTAACACAATGGAGAGGAAATCATACGACCCTTTGCCAGATGTAGAGATATTTGTGGATCTGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF974

Protein Analysis

439

Amino Acids

48.92

Weight (kDa)

5.61

Isoelectric Point (pI)

32.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAPPC13_N PF06159 10 - 195 7.6e-37 Trafficking protein particle complex subunit 13, N-terminal
TRAPPC13_M PF23647 199 - 318 2.2e-21 Trafficking protein particle complex subunit 13, middle domain
TRAPPC13_C PF23643 336 - 427 1.5e-11 Trafficking protein particle complex subunit 13, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 143
AatII GACGTC 1 cut(s) 425
AccB7I CCANNNNNTGG 1 cut(s) 34
AccBSI CCGCTC 1 cut(s) 91
AccII CGCG 1 cut(s) 1116
AciI CCGC 9 cut(s) 89, 105, 150, 153, 217, 380, 563, 604, 810
AclWI GGATC 2 cut(s) 200, 1317
AcsI RAATTY 1 cut(s) 575
AcuI CTGAAG 2 cut(s) 25, 881
AcvI CACGTG 1 cut(s) 184
AcyI GRCGYC 2 cut(s) 258, 422
AfaI GTAC 1 cut(s) 530
AfiI CCNNNNNNNGG 1 cut(s) 34
AflIII ACRYGT 2 cut(s) 183, 507
AgeI ACCGGT 1 cut(s) 790
AgsI TTSAA 6 cut(s) 574, 656, 1048, 1088, 1148, 1172
AjnI CCWGG 3 cut(s) 72, 156, 928
AjuI GAANNNNNNNTTGG 2 cut(s) 1059, 1091
AleI CACNNNNGTG 1 cut(s) 512
AluBI AGCT 6 cut(s) 213, 324, 345, 503, 647, 737
AluI AGCT 6 cut(s) 213, 324, 345, 503, 647, 737
Alw21I GWGCWC 2 cut(s) 505, 521
Alw26I GTCTC 5 cut(s) 59, 265, 305, 413, 1055
Alw44I GTGCAC 1 cut(s) 517
AlwI GGATC 2 cut(s) 200, 1317
AoxI GGCC 3 cut(s) 36, 265, 1078
ApaLI GTGCAC 1 cut(s) 517
ApoI RAATTY 1 cut(s) 575
AseI ATTAAT 1 cut(s) 1137
AsiGI ACCGGT 1 cut(s) 790
AspS9I GGNCC 5 cut(s) 23, 160, 613, 685, 1079
AsuC2I CCSGG 2 cut(s) 13, 143
AsuHPI GGTGA 3 cut(s) 58, 551, 935
AsuII TTCGAA 1 cut(s) 354
AvaII GGWCC 4 cut(s) 23, 160, 613, 685
BaeGI GKGCMC 2 cut(s) 521, 962
BanII GRGCYC 1 cut(s) 505
BbrPI CACGTG 1 cut(s) 184
BbsI GAAGAC 1 cut(s) 1136
Bbv12I GWGCWC 2 cut(s) 505, 521
BccI CCATC 3 cut(s) 260, 530, 1015
BceAI ACGGC 1 cut(s) 559
BciT130I CCWGG 3 cut(s) 74, 158, 930
BcnI CCSGG 2 cut(s) 13, 143
BcoDI GTCTC 5 cut(s) 59, 265, 305, 413, 1055
BglI GCCNNNNNGGC 1 cut(s) 709
BglII AGATCT 1 cut(s) 803
BisI GCNGC 2 cut(s) 150, 153
BlsI GCNGC 2 cut(s) 151, 154
Bme1390I CCNGG 5 cut(s) 13, 74, 143, 158, 930
Bme18I GGWCC 4 cut(s) 23, 160, 613, 685
BmgT120I GGNCC 5 cut(s) 23, 160, 613, 685, 1079
BmiI GGNNCC 3 cut(s) 25, 162, 1183
BmrFI CCNGG 5 cut(s) 13, 74, 143, 158, 930
BmrI ACTGGG 1 cut(s) 1158
BmsI GCATC 4 cut(s) 39, 342, 375, 1023
BmuI ACTGGG 1 cut(s) 1158
BoxI GACNNNNGTC 1 cut(s) 611
BpiI GAAGAC 1 cut(s) 1136
Bpu14I TTCGAA 1 cut(s) 354
BpuMI CCSGG 2 cut(s) 13, 143
BsaAI YACGTR 1 cut(s) 184
BsaBI GATNNNNATC 1 cut(s) 1194
BsaHI GRCGYC 2 cut(s) 258, 422
BsaJI CCNNGG 2 cut(s) 156, 1185
BsaWI WCCGGW 1 cut(s) 790
BsaXI ACNNNNNCTCC 4 cut(s) 173, 203, 227, 257
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse118I RCCGGY 2 cut(s) 433, 790
Bse1I ACTGG 2 cut(s) 39, 1164
Bse3DI GCAATG 1 cut(s) 1206
Bse8I GATNNNNATC 1 cut(s) 1194
BseBI CCWGG 3 cut(s) 74, 158, 930
BseDI CCNNGG 2 cut(s) 156, 1185
BseJI GATNNNNATC 1 cut(s) 1194
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMI GCAATG 1 cut(s) 1206
BseMII CTCAG 1 cut(s) 744
BseNI ACTGG 2 cut(s) 39, 1164
BseRI GAGGAG 7 cut(s) 104, 161, 190, 221, 260, 828, 1133
BseSI GKGCMC 2 cut(s) 521, 962
BseYI CCCAGC 2 cut(s) 209, 707
Bsh1236I CGCG 1 cut(s) 1116
Bsh1285I CGRYCG 1 cut(s) 147
BshFI GGCC 3 cut(s) 38, 267, 1080
BshTI ACCGGT 1 cut(s) 790
BsiEI CGRYCG 1 cut(s) 147
BsiHKAI GWGCWC 2 cut(s) 505, 521
BsiSI CCGG 6 cut(s) 12, 143, 264, 434, 453, 791
BslFI GGGAC 2 cut(s) 146, 377
BslI CCNNNNNNNGG 1 cut(s) 34
BsmAI GTCTC 5 cut(s) 59, 265, 305, 413, 1055
BsmBI CGTCTC 4 cut(s) 59, 265, 305, 413
BsmFI GGGAC 2 cut(s) 146, 377
BsnI GGCC 3 cut(s) 38, 267, 1080
Bsp119I TTCGAA 1 cut(s) 354
Bsp1286I GDGCHC 3 cut(s) 505, 521, 962
Bsp1407I TGTACA 1 cut(s) 528
Bsp143I GATC 5 cut(s) 109, 205, 803, 1233, 1309
BspACI CCGC 9 cut(s) 89, 105, 150, 153, 217, 380, 563, 604, 810
BspANI GGCC 3 cut(s) 38, 267, 1080
BspCNI CTCAG 1 cut(s) 745
BspFNI CGCG 1 cut(s) 1116
BspLI GGNNCC 3 cut(s) 25, 162, 1183
BspPI GGATC 2 cut(s) 200, 1317
BspT104I TTCGAA 1 cut(s) 354
BsrBI CCGCTC 1 cut(s) 91
BsrDI GCAATG 1 cut(s) 1206
BsrFI RCCGGY 2 cut(s) 433, 790
BsrGI TGTACA 1 cut(s) 528
BsrI ACTGG 2 cut(s) 39, 1164
BssAI RCCGGY 2 cut(s) 433, 790
BssECI CCNNGG 2 cut(s) 156, 1185
BssMI GATC 5 cut(s) 109, 205, 803, 1233, 1309
BssNI GRCGYC 2 cut(s) 258, 422
BssT1I CCWWGG 1 cut(s) 1185
Bst2UI CCWGG 3 cut(s) 74, 158, 930
Bst4CI ACNGT 2 cut(s) 1153, 1249
BstACI GRCGYC 2 cut(s) 258, 422
BstAUI TGTACA 1 cut(s) 528
BstBAI YACGTR 1 cut(s) 184
BstBI TTCGAA 1 cut(s) 354
BstC8I GCNNGC 4 cut(s) 62, 548, 649, 705
BstDEI CTNAG 3 cut(s) 304, 609, 753
BstFNI CGCG 1 cut(s) 1116
BstKTI GATC 5 cut(s) 112, 208, 806, 1236, 1312
BstMAI GTCTC 5 cut(s) 59, 265, 305, 413, 1055
BstMBI GATC 5 cut(s) 109, 205, 803, 1233, 1309
BstMCI CGRYCG 1 cut(s) 147
BstMWI GCNNNNNNNGC 4 cut(s) 264, 293, 330, 709
BstNI CCWGG 3 cut(s) 74, 158, 930
BstPAI GACNNNNGTC 1 cut(s) 611
BstSCI CCNGG 5 cut(s) 11, 72, 141, 156, 928
BstSLI GKGCMC 2 cut(s) 521, 962
BstUI CGCG 1 cut(s) 1116
BstV2I GAAGAC 1 cut(s) 1136
BstX2I RGATCY 2 cut(s) 803, 1309
BstYI RGATCY 2 cut(s) 803, 1309
BsuRI GGCC 3 cut(s) 38, 267, 1080
BtsI GCAGTG 1 cut(s) 519
BtsIMutI CAGTG 3 cut(s) 32, 519, 1171
Cac8I GCNNGC 4 cut(s) 62, 548, 649, 705
Cfr10I RCCGGY 2 cut(s) 433, 790
Cfr13I GGNCC 5 cut(s) 23, 160, 613, 685, 1079
CseI GACGC 2 cut(s) 41, 247
CsiI ACCWGGT 1 cut(s) 928
Csp6I GTAC 1 cut(s) 529
CspAI ACCGGT 1 cut(s) 790
CviAII CATG 2 cut(s) 482, 848
CviQI GTAC 1 cut(s) 529
DdeI CTNAG 3 cut(s) 304, 609, 753
DpnI GATC 5 cut(s) 111, 207, 805, 1235, 1311
DpnII GATC 5 cut(s) 109, 205, 803, 1233, 1309
DrdI GACNNNNNNGTC 1 cut(s) 143
DseDI GACNNNNNNGTC 1 cut(s) 143
EciI GGCGGA 2 cut(s) 395, 825
Ecl136II GAGCTC 1 cut(s) 503
Eco130I CCWWGG 1 cut(s) 1185
Eco24I GRGCYC 1 cut(s) 505
Eco47I GGWCC 4 cut(s) 23, 160, 613, 685
Eco53kI GAGCTC 1 cut(s) 503
Eco57I CTGAAG 2 cut(s) 25, 881
Eco72I CACGTG 1 cut(s) 184
EcoICRI GAGCTC 1 cut(s) 503
EcoO109I RGGNCCY 1 cut(s) 160
EcoRII CCWGG 3 cut(s) 72, 156, 928
EcoT14I CCWWGG 1 cut(s) 1185
EcoT38I GRGCYC 1 cut(s) 505
ErhI CCWWGG 1 cut(s) 1185
Esp3I CGTCTC 4 cut(s) 59, 265, 305, 413
FaeI CATG 2 cut(s) 485, 851
FaiI YATR 8 cut(s) 465, 483, 663, 683, 849, 956, 968, 1276
FaqI GGGAC 2 cut(s) 146, 377
FatI CATG 2 cut(s) 481, 847
FauI CCCGC 1 cut(s) 112
Fnu4HI GCNGC 2 cut(s) 150, 153
FriOI GRGCYC 1 cut(s) 505
Fsp4HI GCNGC 2 cut(s) 150, 153
GluI GCNGC 2 cut(s) 150, 153
GsaI CCCAGC 2 cut(s) 213, 711
HaeIII GGCC 3 cut(s) 38, 267, 1080
HapII CCGG 6 cut(s) 12, 143, 264, 434, 453, 791
HgaI GACGC 2 cut(s) 41, 247
Hin1I GRCGYC 2 cut(s) 258, 422
Hin1II CATG 2 cut(s) 485, 851
HindIII AAGCTT 1 cut(s) 645
HinfI GANTC 5 cut(s) 80, 197, 248, 440, 1109
HpaII CCGG 6 cut(s) 12, 143, 264, 434, 453, 791
HphI GGTGA 3 cut(s) 58, 551, 935
Hpy166II GTNNAC 5 cut(s) 23, 79, 519, 893, 926
Hpy188III TCNNGA 2 cut(s) 1132, 1313
Hpy8I GTNNAC 5 cut(s) 23, 79, 519, 893, 926
Hpy99I CGWCG 3 cut(s) 122, 140, 427
HpyAV CCTTC 5 cut(s) 49, 75, 298, 484, 1117
HpyCH4III ACNGT 2 cut(s) 1153, 1249
HpyCH4IV ACGT 5 cut(s) 183, 314, 422, 509, 905
HpyCH4V TGCA 6 cut(s) 60, 388, 519, 651, 722, 991
HpyF10VI GCNNNNNNNGC 4 cut(s) 264, 293, 330, 709
HpyF3I CTNAG 3 cut(s) 304, 609, 753
HpySE526I ACGT 5 cut(s) 183, 314, 422, 509, 905
Hsp92I GRCGYC 2 cut(s) 258, 422
Hsp92II CATG 2 cut(s) 485, 851
Kzo9I GATC 5 cut(s) 109, 205, 803, 1233, 1309
LmnI GCTCC 5 cut(s) 96, 234, 293, 350, 500
LweI GCATC 4 cut(s) 39, 342, 375, 1023
MabI ACCWGGT 1 cut(s) 928
MaeII ACGT 5 cut(s) 183, 314, 422, 509, 905
MaeIII GTNAC 2 cut(s) 539, 821
MalI GATC 5 cut(s) 111, 207, 805, 1235, 1311
MbiI CCGCTC 1 cut(s) 91
MboI GATC 5 cut(s) 109, 205, 803, 1233, 1309
MboII GAAGA 5 cut(s) 124, 562, 1115, 1136, 1243
MflI RGATCY 2 cut(s) 803, 1309
MhlI GDGCHC 3 cut(s) 505, 521, 962
MluCI AATT 7 cut(s) 297, 349, 566, 575, 951, 1019, 1049
MlyI GAGTC 5 cut(s) 74, 191, 242, 449, 1103
MmeI TCCRAC 2 cut(s) 270, 396
MseI TTAA 5 cut(s) 624, 783, 839, 1137, 1254
MslI CAYNNNNRTG 2 cut(s) 512, 717
MspI CCGG 6 cut(s) 12, 143, 264, 434, 453, 791
MspR9I CCNGG 5 cut(s) 13, 74, 143, 158, 930
MvaI CCWGG 3 cut(s) 74, 158, 930
MvnI CGCG 1 cut(s) 1116
MwoI GCNNNNNNNGC 4 cut(s) 264, 293, 330, 709
NciI CCSGG 2 cut(s) 13, 143
NdeII GATC 5 cut(s) 109, 205, 803, 1233, 1309
NlaIII CATG 2 cut(s) 485, 851
NlaIV GGNNCC 3 cut(s) 25, 162, 1183
NmuCI GTSAC 1 cut(s) 539
NspV TTCGAA 1 cut(s) 354
OliI CACNNNNGTG 1 cut(s) 512
PcsI WCGNNNNNNNCGW 2 cut(s) 105, 180
PflFI GACNNNGTC 1 cut(s) 143
PflMI CCANNNNNTGG 1 cut(s) 34
PinAI ACCGGT 1 cut(s) 790
PkrI GCNGC 2 cut(s) 151, 154
PleI GAGTC 5 cut(s) 74, 191, 242, 448, 1103
PmaCI CACGTG 1 cut(s) 184
PmlI CACGTG 1 cut(s) 184
PpsI GAGTC 5 cut(s) 74, 191, 242, 448, 1103
Ppu21I YACGTR 1 cut(s) 184
PpuMI RGGWCCY 1 cut(s) 160
PshAI GACNNNNGTC 1 cut(s) 611
PshBI ATTAAT 1 cut(s) 1137
Psp124BI GAGCTC 1 cut(s) 505
Psp5II RGGWCCY 1 cut(s) 160
Psp6I CCWGG 3 cut(s) 72, 156, 928
PspCI CACGTG 1 cut(s) 184
PspFI CCCAGC 2 cut(s) 209, 707
PspGI CCWGG 3 cut(s) 72, 156, 928
PspN4I GGNNCC 3 cut(s) 25, 162, 1183
PspPI GGNCC 5 cut(s) 23, 160, 613, 685, 1079
PspPPI RGGWCCY 1 cut(s) 160
PsuI RGATCY 2 cut(s) 803, 1309
PsyI GACNNNGTC 1 cut(s) 143
RsaI GTAC 1 cut(s) 530
RsaNI GTAC 1 cut(s) 529
RseI CAYNNNNRTG 2 cut(s) 512, 717
SacI GAGCTC 1 cut(s) 505
SaqAI TTAA 5 cut(s) 624, 783, 839, 1137, 1254
SatI GCNGC 2 cut(s) 150, 153
Sau3AI GATC 5 cut(s) 109, 205, 803, 1233, 1309
Sau96I GGNCC 5 cut(s) 23, 160, 613, 685, 1079
SchI GAGTC 5 cut(s) 74, 191, 242, 449, 1103
ScrFI CCNGG 5 cut(s) 13, 74, 143, 158, 930
SduI GDGCHC 3 cut(s) 505, 521, 962
SexAI ACCWGGT 1 cut(s) 928
SfaNI GCATC 4 cut(s) 39, 342, 375, 1023
SfuI TTCGAA 1 cut(s) 354
SinI GGWCC 4 cut(s) 23, 160, 613, 685
SmiMI CAYNNNNRTG 2 cut(s) 512, 717
Sse9I AATT 7 cut(s) 297, 349, 566, 575, 951, 1019, 1049
SsiI CCGC 9 cut(s) 89, 105, 150, 153, 217, 380, 563, 604, 810
SspI AATATT 1 cut(s) 883
SstI GAGCTC 1 cut(s) 505
StyD4I CCNGG 5 cut(s) 11, 72, 141, 156, 928
StyI CCWWGG 1 cut(s) 1185
TaaI ACNGT 2 cut(s) 1153, 1249
TaiI ACGT 5 cut(s) 186, 317, 425, 512, 908
TaqI TCGA 5 cut(s) 99, 135, 174, 354, 425
TasI AATT 7 cut(s) 297, 349, 566, 575, 951, 1019, 1049
TatI WGTACW 1 cut(s) 528
TauI GCSGC 2 cut(s) 152, 155
Tru1I TTAA 5 cut(s) 624, 783, 839, 1137, 1254
Tru9I TTAA 5 cut(s) 624, 783, 839, 1137, 1254
TscAI CASTG 3 cut(s) 39, 526, 1171
TseFI GTSAC 1 cut(s) 539
Tsp45I GTSAC 1 cut(s) 539
TspDTI ATGAA 6 cut(s) 57, 460, 568, 756, 773, 1184
TspGWI ACGGA 1 cut(s) 605
TspRI CASTG 3 cut(s) 39, 526, 1171
Tth111I GACNNNGTC 1 cut(s) 143
Van91I CCANNNNNTGG 1 cut(s) 34
VneI GTGCAC 1 cut(s) 517
VpaK11BI GGWCC 4 cut(s) 23, 160, 613, 685
VspI ATTAAT 1 cut(s) 1137
XapI RAATTY 1 cut(s) 575
ZraI GACGTC 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.