Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0009230

Physical Location & Seq

Genomic Coordinates Reverse (-)

2913534 .. 2918134

Gene Structure 4601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g05040.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGCGGCCGAGAACGGAATCTGCACCGGCGGCGACCGATCGGCGCTGATCTTCGTCGGCACCGGATGCTCGAGCGCCGTTCCCAACGCAATGTGCCTCATCCAGCCTTCCGATCCGCCCTGCCACGTGTGCTCCCAGGCGCTCTCCCTTCCCGCCGAGCAAAACCCTAATTACAGGTGCAATACGTCGCTGCTGATCGATTATCGCCGGAGCGACGGCGAGCACAGCTACGTGTTGATCGATGTGGGGAAGACGTTCAGGGAGCAAGTGCTGCGGTGGTTCACTCGCTATAAGATTCCTAGAGTCGATTCTGTTGTTTTGACTCATGAACATGCTGATGCAGTTCTTGGTCTGGATGATATACGTACTGTACAACCATATAGTCCCACAAATGACATTGATCCTACTCCCATCTACCTAACTCAATTCGCAATGGAGAGCATTGCGGTGAAGTTCCCTTACTTGGTTCAGAAAAAACTTAAGGAAGGCCAAGAAGTGAGGCGGGTTACACAACTCGACTGGAGGATAATTGAGGGCCGTTGTGAAACACCTTTTGTTGCATCAGGCCTACAATTTGTTCCTTTGCCAGTGATGCATGGGGAAGATTATGTCAGCTTGGGTTATCTATTTGGTGAACAGTCTCGAATAGCTTATATATCTGATGTGTCACGTTTTCCTCCAAGCACAGAGCATTTGATTTCAAAAGATGGCGGTGGGCAGTTGGATCTTCTTATCTTGGACACATTATACAAGAACGGATCCCATAATACTCACTTTTGCTTCCCACAGGCTCTAGAAGCTGTAAAGAGGATTTGTCCTAAACAGGCCCTGCTAATTGGAATGACTCATGAGTTTGACCACCACAAGGACAATGAATTTCTTGTGGAATGGTCTAAGCGGGAAGGGATACCTGTGCAGCTTGCGCATGATGGTTTGAGAGTCCCTTTAGACCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00440 map00440

Pfam Domains

Protein Families

Lactamase_B_2

Protein Analysis

319

Amino Acids

35.71

Weight (kDa)

5.73

Isoelectric Point (pI)

42.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Anti-Pycsar_Apyc1	PF23023	74 - 229	1.4e-07	Anti-Pycsar protein Apyc1
Lactamase_B_2	PF12706	78 - 280	4e-23	Beta-lactamase superfamily domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30300 AT1G30300 AT1G30300 AT1G30300
fragaria_vesca	FvH4_3g05040 FvH4_3g05040 FvH4_3g05040
malus_domestica	MD05G1279500.v1.1 MD10G1258200.v1.1
prunus_persica	Prupe.4G085600_v2.0.a1
pyrus_communis	pycom10g21450
rosa_chinensis	RchiOBHm_Chr5g0014931
rosa_laevigata	RLG00000032151
rosa_multiflora	Rmu_sc0013610.1_g000001
rosa_roxburghii	Rroxscaffold_1G00061650
rosa_rugosa	Rorug05G0021500 Rorug05G0021600
rosa_samantha	Rh5AG117200 Rh5BG114200 Rh5CG125700 Rh5DG113600
rosa_wichuraiana	Rw5G010090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	924
AccB1I	GGYRCC	1 cut(s)	59
AciI	CCGC	9 cut(s)	5, 30, 116, 153, 274, 446, 502, 711, 898
AclWI	GGATC	5 cut(s)	107, 395, 732, 753, 766
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	1 cut(s)	875
AcvI	CACGTG	1 cut(s)	127
AfaI	GTAC	2 cut(s)	367, 372
AfiI	CCNNNNNNNGG	2 cut(s)	463, 865
AflII	CTTAAG	1 cut(s)	479
AflIII	ACRYGT	2 cut(s)	126, 231
AgsI	TTSAA	1 cut(s)	702
AjnI	CCWGG	1 cut(s)	135
AluBI	AGCT	5 cut(s)	228, 615, 650, 800, 919
AluI	AGCT	5 cut(s)	228, 615, 650, 800, 919
Alw21I	GWGCWC	2 cut(s)	134, 225
Alw26I	GTCTC	1 cut(s)	645
AlwI	GGATC	5 cut(s)	107, 395, 732, 753, 766
AlwNI	CAGNNNCTG	1 cut(s)	829
Ama87I	CYCGRG	1 cut(s)	70
AoxI	GGCC	5 cut(s)	6, 487, 535, 565, 825
ApeKI	GCWGC	3 cut(s)	190, 271, 916
ApoI	RAATTY	1 cut(s)	875
Asp700I	GAANNNNTTC	1 cut(s)	254
AspLEI	GCGC	4 cut(s)	46, 77, 142, 925
AspS9I	GGNCC	2 cut(s)	535, 826
AsuHPI	GGTGA	2 cut(s)	460, 644
AvaI	CYCGRG	1 cut(s)	70
BamHI	GGATCC	1 cut(s)	758
BanI	GGYRCC	1 cut(s)	59
BarI	GAAGNNNNNNTAC	2 cut(s)	443, 475
BbrPI	CACGTG	1 cut(s)	127
BbsI	GAAGAC	1 cut(s)	257
Bbv12I	GWGCWC	2 cut(s)	134, 225
BbvI	GCAGC	3 cut(s)	177, 258, 928
BccI	CCATC	3 cut(s)	419, 701, 923
BceAI	ACGGC	3 cut(s)	62, 232, 522
BciT130I	CCWGG	1 cut(s)	137
BciVI	GTATCC	1 cut(s)	900
BcoDI	GTCTC	1 cut(s)	645
BfaI	CTAG	2 cut(s)	300, 794
BfoI	RGCGCY	3 cut(s)	47, 78, 143
BfrI	CTTAAG	1 cut(s)	479
BfuI	GTATCC	1 cut(s)	900
BisI	GCNGC	5 cut(s)	6, 31, 191, 272, 917
BlsI	GCNGC	5 cut(s)	7, 32, 192, 273, 918
Bme1390I	CCNGG	1 cut(s)	137
BmeT110I	CYCGRG	1 cut(s)	70
BmgT120I	GGNCC	2 cut(s)	535, 826
BmiI	GGNNCC	2 cut(s)	61, 760
BmrFI	CCNGG	1 cut(s)	137
BmsI	GCATC	4 cut(s)	56, 328, 569, 582
BpiI	GAAGAC	1 cut(s)	257
BpmI	CTGGAG	1 cut(s)	541
Bsa29I	ATCGAT	2 cut(s)	198, 240
BsaAI	YACGTR	3 cut(s)	127, 232, 365
BsaJI	CCNNGG	1 cut(s)	135
BsaWI	WCCGGW	1 cut(s)	62
BsaXI	ACNNNNNCTCC	2 cut(s)	116, 146
Bsc4I	CCNNNNNNNGG	2 cut(s)	463, 865
Bse118I	RCCGGY	1 cut(s)	26
Bse1I	ACTGG	2 cut(s)	524, 587
Bse3DI	GCAATG	3 cut(s)	96, 438, 441
BseBI	CCWGG	1 cut(s)	137
BseCI	ATCGAT	2 cut(s)	198, 240
BseDI	CCNNGG	1 cut(s)	135
BseGI	GGATG	3 cut(s)	71, 99, 361
BseLI	CCNNNNNNNGG	2 cut(s)	463, 865
BseMI	GCAATG	3 cut(s)	96, 438, 441
BseNI	ACTGG	2 cut(s)	524, 587
BseX3I	CGGCCG	1 cut(s)	6
BseXI	GCAGC	3 cut(s)	177, 258, 928
BsgI	GTGCAG	2 cut(s)	7, 935
Bsh1285I	CGRYCG	3 cut(s)	9, 37, 41
BshFI	GGCC	5 cut(s)	8, 489, 537, 567, 827
BshNI	GGYRCC	1 cut(s)	59
BshVI	ATCGAT	2 cut(s)	198, 240
BsiEI	CGRYCG	3 cut(s)	9, 37, 41
BsiHKAI	GWGCWC	2 cut(s)	134, 225
BsiHKCI	CYCGRG	1 cut(s)	70
BsiSI	CCGG	3 cut(s)	27, 63, 208
BslFI	GGGAC	2 cut(s)	369, 926
BslI	CCNNNNNNNGG	2 cut(s)	463, 865
BsmAI	GTCTC	1 cut(s)	645
BsmFI	GGGAC	2 cut(s)	369, 926
BsnI	GGCC	5 cut(s)	8, 489, 537, 567, 827
BsoBI	CYCGRG	1 cut(s)	70
Bsp1286I	GDGCHC	2 cut(s)	134, 225
Bsp1407I	TGTACA	1 cut(s)	370
Bsp143I	GATC	8 cut(s)	38, 48, 112, 195, 237, 400, 724, 758
BspACI	CCGC	9 cut(s)	5, 30, 116, 153, 274, 446, 502, 711, 898
BspANI	GGCC	5 cut(s)	8, 489, 537, 567, 827
BspDI	ATCGAT	2 cut(s)	198, 240
BspHI	TCATGA	2 cut(s)	325, 847
BspLI	GGNNCC	2 cut(s)	61, 760
BspPI	GGATC	5 cut(s)	107, 395, 732, 753, 766
BspT107I	GGYRCC	1 cut(s)	59
BspTI	CTTAAG	1 cut(s)	479
BsrDI	GCAATG	3 cut(s)	96, 438, 441
BsrFI	RCCGGY	1 cut(s)	26
BsrGI	TGTACA	1 cut(s)	370
BsrI	ACTGG	2 cut(s)	524, 587
BssAI	RCCGGY	1 cut(s)	26
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	8 cut(s)	38, 48, 112, 195, 237, 400, 724, 758
Bst2UI	CCWGG	1 cut(s)	137
Bst4CI	ACNGT	2 cut(s)	370, 639
BstAFI	CTTAAG	1 cut(s)	479
BstAPI	GCANNNNNTGC	2 cut(s)	66, 271
BstAUI	TGTACA	1 cut(s)	370
BstBAI	YACGTR	3 cut(s)	127, 232, 365
BstC8I	GCNNGC	2 cut(s)	221, 921
BstDEI	CTNAG	1 cut(s)	894
BstF5I	GGATG	3 cut(s)	71, 99, 361
BstH2I	RGCGCY	3 cut(s)	47, 78, 143
BstHHI	GCGC	4 cut(s)	46, 77, 142, 925
BstKTI	GATC	8 cut(s)	41, 51, 115, 198, 240, 403, 727, 761
BstMAI	GTCTC	1 cut(s)	645
BstMBI	GATC	8 cut(s)	38, 48, 112, 195, 237, 400, 724, 758
BstMCI	CGRYCG	3 cut(s)	9, 37, 41
BstMWI	GCNNNNNNNGC	8 cut(s)	30, 66, 129, 225, 271, 592, 797, 922
BstNI	CCWGG	1 cut(s)	137
BstNSI	RCATGY	1 cut(s)	335
BstSCI	CCNGG	1 cut(s)	135
BstSNI	TACGTA	1 cut(s)	365
BstV1I	GCAGC	3 cut(s)	177, 258, 928
BstV2I	GAAGAC	1 cut(s)	257
BstX2I	RGATCY	2 cut(s)	724, 758
BstYI	RGATCY	2 cut(s)	724, 758
BstZI	CGGCCG	1 cut(s)	6
Bsu15I	ATCGAT	2 cut(s)	198, 240
BsuI	GTATCC	1 cut(s)	900
BsuRI	GGCC	5 cut(s)	8, 489, 537, 567, 827
BsuTUI	ATCGAT	2 cut(s)	198, 240
BtsCI	GGATG	3 cut(s)	71, 99, 361
BtsIMutI	CAGTG	1 cut(s)	594
Cac8I	GCNNGC	2 cut(s)	221, 921
CaiI	CAGNNNCTG	1 cut(s)	829
CciI	TCATGA	2 cut(s)	325, 847
CfoI	GCGC	4 cut(s)	46, 77, 142, 925
Cfr10I	RCCGGY	1 cut(s)	26
Cfr13I	GGNCC	2 cut(s)	535, 826
ClaI	ATCGAT	2 cut(s)	198, 240
Csp6I	GTAC	2 cut(s)	366, 371
CviAII	CATG	5 cut(s)	326, 332, 596, 848, 926
CviQI	GTAC	2 cut(s)	366, 371
DdeI	CTNAG	1 cut(s)	894
DpnI	GATC	8 cut(s)	40, 50, 114, 197, 239, 402, 726, 760
DpnII	GATC	8 cut(s)	38, 48, 112, 195, 237, 400, 724, 758
EaeI	YGGCCR	1 cut(s)	6
EagI	CGGCCG	1 cut(s)	6
EciI	GGCGGA	1 cut(s)	105
EclXI	CGGCCG	1 cut(s)	6
Eco105I	TACGTA	1 cut(s)	365
Eco147I	AGGCCT	1 cut(s)	567
Eco52I	CGGCCG	1 cut(s)	6
Eco72I	CACGTG	1 cut(s)	127
Eco88I	CYCGRG	1 cut(s)	70
EcoO109I	RGGNCCY	1 cut(s)	826
EcoRII	CCWGG	1 cut(s)	135
EcoT22I	ATGCAT	1 cut(s)	597
FaeI	CATG	5 cut(s)	329, 335, 599, 851, 929
FaqI	GGGAC	2 cut(s)	369, 926
FatI	CATG	5 cut(s)	325, 331, 595, 847, 925
FauI	CCCGC	3 cut(s)	160, 495, 891
Fnu4HI	GCNGC	5 cut(s)	6, 31, 191, 272, 917
FokI	GGATG	3 cut(s)	78, 86, 368
Fsp4HI	GCNGC	5 cut(s)	6, 31, 191, 272, 917
FspBI	CTAG	2 cut(s)	300, 794
FspI	TGCGCA	1 cut(s)	924
GlaI	GCGC	4 cut(s)	45, 76, 141, 924
GluI	GCNGC	5 cut(s)	6, 31, 191, 272, 917
GsuI	CTGGAG	1 cut(s)	541
HaeII	RGCGCY	3 cut(s)	47, 78, 143
HaeIII	GGCC	5 cut(s)	8, 489, 537, 567, 827
HapII	CCGG	3 cut(s)	27, 63, 208
HhaI	GCGC	4 cut(s)	46, 77, 142, 925
Hin1II	CATG	5 cut(s)	329, 335, 599, 851, 929
Hin6I	GCGC	4 cut(s)	44, 75, 140, 923
HinP1I	GCGC	4 cut(s)	44, 75, 140, 923
HinfI	GANTC	7 cut(s)	18, 295, 303, 308, 322, 844, 939
HpaII	CCGG	3 cut(s)	27, 63, 208
HphI	GGTGA	2 cut(s)	460, 644
Hpy166II	GTNNAC	2 cut(s)	282, 635
Hpy188I	TCNGA	3 cut(s)	112, 471, 661
Hpy188III	TCNNGA	5 cut(s)	326, 353, 642, 794, 848
Hpy8I	GTNNAC	2 cut(s)	282, 635
Hpy99I	CGWCG	3 cut(s)	59, 190, 218
HpyAV	CCTTC	4 cut(s)	117, 158, 479, 896
HpyCH4III	ACNGT	2 cut(s)	370, 639
HpyCH4IV	ACGT	6 cut(s)	126, 185, 231, 254, 364, 670
HpyCH4V	TGCA	6 cut(s)	24, 180, 341, 560, 595, 916
HpyF10VI	GCNNNNNNNGC	8 cut(s)	30, 66, 129, 225, 271, 592, 797, 922
HpyF3I	CTNAG	1 cut(s)	894
HpySE526I	ACGT	6 cut(s)	126, 185, 231, 254, 364, 670
Hsp92II	CATG	5 cut(s)	329, 335, 599, 851, 929
HspAI	GCGC	4 cut(s)	44, 75, 140, 923
Kzo9I	GATC	8 cut(s)	38, 48, 112, 195, 237, 400, 724, 758
LmnI	GCTCC	3 cut(s)	137, 210, 262
Lsp1109I	GCAGC	3 cut(s)	177, 258, 928
LweI	GCATC	4 cut(s)	56, 328, 569, 582
MaeI	CTAG	2 cut(s)	300, 794
MaeII	ACGT	6 cut(s)	126, 185, 231, 254, 364, 670
MaeIII	GTNAC	2 cut(s)	505, 666
MalI	GATC	8 cut(s)	40, 50, 114, 197, 239, 402, 726, 760
MboI	GATC	8 cut(s)	38, 48, 112, 195, 237, 400, 724, 758
MboII	GAAGA	4 cut(s)	43, 262, 614, 719
MflI	RGATCY	2 cut(s)	724, 758
MhlI	GDGCHC	2 cut(s)	134, 225
MluCI	AATT	6 cut(s)	169, 425, 528, 572, 834, 875
MlyI	GAGTC	4 cut(s)	312, 316, 838, 948
MmeI	TCCRAC	1 cut(s)	702
MnlI	CCTC	6 cut(s)	107, 492, 516, 526, 687, 801
Mph1103I	ATGCAT	1 cut(s)	597
MroXI	GAANNNNTTC	1 cut(s)	254
MseI	TTAA	1 cut(s)	480
MslI	CAYNNNNRTG	3 cut(s)	330, 336, 446
MspCI	CTTAAG	1 cut(s)	479
MspI	CCGG	3 cut(s)	27, 63, 208
MspR9I	CCNGG	1 cut(s)	137
MvaI	CCWGG	1 cut(s)	137
MwoI	GCNNNNNNNGC	8 cut(s)	30, 66, 129, 225, 271, 592, 797, 922
NdeII	GATC	8 cut(s)	38, 48, 112, 195, 237, 400, 724, 758
NlaIII	CATG	5 cut(s)	329, 335, 599, 851, 929
NlaIV	GGNNCC	2 cut(s)	61, 760
NmeAIII	GCCGAG	2 cut(s)	34, 181
NmuCI	GTSAC	1 cut(s)	666
NsbI	TGCGCA	1 cut(s)	924
NsiI	ATGCAT	1 cut(s)	597
NspI	RCATGY	1 cut(s)	335
PaeR7I	CTCGAG	1 cut(s)	70
PagI	TCATGA	2 cut(s)	325, 847
PceI	AGGCCT	1 cut(s)	567
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PdmI	GAANNNNTTC	1 cut(s)	254
PfeI	GAWTC	3 cut(s)	18, 295, 308
PkrI	GCNGC	5 cut(s)	7, 32, 192, 273, 918
Ple19I	CGATCG	1 cut(s)	41
PleI	GAGTC	4 cut(s)	311, 316, 838, 947
PmaCI	CACGTG	1 cut(s)	127
PmlI	CACGTG	1 cut(s)	127
PpsI	GAGTC	4 cut(s)	311, 316, 838, 947
Ppu21I	YACGTR	3 cut(s)	127, 232, 365
Psp6I	CCWGG	1 cut(s)	135
PspCI	CACGTG	1 cut(s)	127
PspGI	CCWGG	1 cut(s)	135
PspN4I	GGNNCC	2 cut(s)	61, 760
PspPI	GGNCC	2 cut(s)	535, 826
PspXI	VCTCGAGB	1 cut(s)	70
PstNI	CAGNNNCTG	1 cut(s)	829
PsuI	RGATCY	2 cut(s)	724, 758
PvuI	CGATCG	1 cut(s)	41
RsaI	GTAC	2 cut(s)	367, 372
RsaNI	GTAC	2 cut(s)	366, 371
RseI	CAYNNNNRTG	3 cut(s)	330, 336, 446
SaqAI	TTAA	1 cut(s)	480
SatI	GCNGC	5 cut(s)	6, 31, 191, 272, 917
Sau3AI	GATC	8 cut(s)	38, 48, 112, 195, 237, 400, 724, 758
Sau96I	GGNCC	2 cut(s)	535, 826
SchI	GAGTC	4 cut(s)	312, 316, 838, 948
ScrFI	CCNGG	1 cut(s)	137
SduI	GDGCHC	2 cut(s)	134, 225
SfaNI	GCATC	4 cut(s)	56, 328, 569, 582
Sfr274I	CTCGAG	1 cut(s)	70
SgrAI	CRCCGGYG	1 cut(s)	26
SlaI	CTCGAG	1 cut(s)	70
SmiMI	CAYNNNNRTG	3 cut(s)	330, 336, 446
SmlI	CTYRAG	2 cut(s)	70, 479
SmoI	CTYRAG	2 cut(s)	70, 479
SnaBI	TACGTA	1 cut(s)	365
Sse9I	AATT	6 cut(s)	169, 425, 528, 572, 834, 875
SseBI	AGGCCT	1 cut(s)	567
SsiI	CCGC	9 cut(s)	5, 30, 116, 153, 274, 446, 502, 711, 898
SspMI	CTAG	2 cut(s)	300, 794
StuI	AGGCCT	1 cut(s)	567
StyD4I	CCNGG	1 cut(s)	135
TaaI	ACNGT	2 cut(s)	370, 639
TaiI	ACGT	6 cut(s)	129, 188, 234, 257, 367, 673
TaqI	TCGA	6 cut(s)	71, 198, 240, 306, 516, 643
TaqII	GACCGA	1 cut(s)	51
TasI	AATT	6 cut(s)	169, 425, 528, 572, 834, 875
TatI	WGTACW	1 cut(s)	370
TauI	GCSGC	2 cut(s)	8, 33
TfiI	GAWTC	3 cut(s)	18, 295, 308
Tru1I	TTAA	1 cut(s)	480
Tru9I	TTAA	1 cut(s)	480
TscAI	CASTG	1 cut(s)	594
TseFI	GTSAC	1 cut(s)	666
TseI	GCWGC	3 cut(s)	190, 271, 916
Tsp45I	GTSAC	1 cut(s)	666
TspDTI	ATGAA	2 cut(s)	342, 888
TspGWI	ACGGA	2 cut(s)	30, 771
TspRI	CASTG	1 cut(s)	594
Vha464I	CTTAAG	1 cut(s)	479
XapI	RAATTY	1 cut(s)	875
XbaI	TCTAGA	1 cut(s)	793
XceI	RCATGY	1 cut(s)	335
XhoI	CTCGAG	1 cut(s)	70
XmnI	GAANNNNTTC	1 cut(s)	254
XspI	CTAG	2 cut(s)	300, 794
Zsp2I	ATGCAT	1 cut(s)	597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.